Abstract
Entire mitochondrial control region data were generated for 187 individuals from Vietnam. These samples have been previously typed for 16 autosomal short-tandem repeats (STRs) [1].
References
Shimada I, Brinkman B, Tuyen NQ, Hohoff C (2002) Allele frequency data for 16 loci in the Vietnamese population. Int J Legal Med 116:246–248
Brandstätter A, Peterson C, Irwin J, Mpoke S, Koech D, Parson W, Parsons T (2004) Mitochondrial DNA control region sequences from Nairobi (Kenya): inferring phylogenetic and population genetic parameters for the establishment of a forensic database. Int J Legal Med 118:294–306
Anderson S, Bankier A, Barrell B et al (1981) Sequence and organization of the human mitochondrial genome. Nature 290:457–465
Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147
Wilson M, Allard M, Monson K, Miller K, Budowle B (2002) Recommendations for consistent treatment of length variants in the human mitochondrial control region. Forensic Sci Int 129:35–42
Wilson M, Allard M, Monson K, Miller K, Budowle B (2002) Further discussion of the consistent treatment of length variants in the human mitochondrial DNA control region. Forensic Sci Comm 4(4):1–10
Bandelt HJ, Parson W (2007) Consistent treatment of length variants in the human mtDNA control region: a reappraisal. Int J Legal Med (in press). DOI 10.1007/s00414-006-0151-5
Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, Scozzari R, Cruciani F, Zeviani M, Briem E, Carelli V, Moral P, Dugoujon J, Roostalu U, Loogvali E, Kivisild T, Bandelt H, Richards M, Villems R, Santachiara-Benerecetti A, Semino O, Torroni A (2004) The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool. Am J Hum Genet 75:910–918
Achilli A, Rengo C, Battaglia V, Pala M, Olivieri A, Fornarino S, Magri C, Scozzari R, Babudri N, Santachiara-Banerecetti AS, Bandelt HJ, Semino O, Torroni A (2005) Saami and Berbers—an unexpected mitochondrial DNA link. Am J Hum Genet 76:883–886
Allard MW, Miller K, Wilson M, Monson K, Budowle B (2002) Characterization of the Caucasian haplogroups present in the SWGDAM forensic mtDNA dataset for 1771 human control region sequences. J Forensic Sci 47:1215–1223
Andrews RM, Kubacka I, Chinnery PF, Lightowlers RN, Turnbull DM, Howell N (1999) Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA. Nat Genet 23:147
Bandelt HJ, Alves-Silva J, Guimaraes PE, Santos MS, Brehm A, Pereira L, Coppa A, Larruga JM, Rengo C, Scozzari R, Torroni A, Prata MJ, Amorim A, Prado VF, Pena SD (2001) Phylogeography of the human mitochondrial haplogroup L3e: a snapshot of African prehistory and Atlantic slave trade. Ann Hum Genet 65:549–563
Brehm A, Pereira L, Bandelt HJ, Prata MJ, Amorim A (2002) Mitochondrial portrait of the Cabo Verde archipelago: the Senegambian outpost of Atlantic slave trade. Ann Hum Genet 66:49–60
Finnila S, Lehtonen MS, Majamaa K (2001) Phylogenetic network for European DNA. Am J Hum Genet 68:1315–1320
Kivisild T, Tolk H, Parik J, Wang Y, Papiha S, Bandelt HJ, Villems R (2002) The emerging limbs and twigs of the East Asian mtDNA tree. Mol Bio Evol 19(10):1737–1751
Lee HY, Yoo JE, Park MJ, Chung U, Shin KJ (2006) Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control. Int J Legal Med 120:5–14
Macaulay V, Richards M, Hickey E, Vega E, Cruciani F, Guida V, Scozzari R, Bonne-Tamir B, Sykes B, Torroni A (1999) The emerging tree of west Eurasian mtDNAs: a synthesis of control-region sequences and RFLPs. Am J Hum Genet 64:232–249
Mishmar D, Ruiz-Pesini E, Golik P, Macaulay V, Clark AG, Hosseini S, Brandon M, Easley K, Chen E, Brown MD, Sukernik RI, Olckers A, Wallace DC (2003) Natural selection shaped regional mtDNA variation in humans. Proc Natl Acad Sci USA 100:171–176
Palanichamy MG, Sun C, Agrawal S, Bandelt H-J, Kong Q-P, Khan F, Wang C-Y, Chaudhuri TK, Palla V, Zhang Y-P (2004) Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: Implications for the peopling of South Asia. Am J Hum Genet 75:966–978
Quintana-Murci L, Semino O, Bandelt HJ, Passarino G, McElreavey K, Santachiara-Benerecetti AS (1999) Genetic evidence of an early exit of Homo sapiens sapiens from Africa through eastern Africa. Nat Genet 23:437–441
Quintana-Murci L, Chaix R, Wells S, Behar D, Sayar H, Scozzari R, Rengo C, Al-Zahery N, Semino O, Santachiara-Benerecetti AS, Coppa A, Ayub Z, Mohyuddin A, Tyler-Smith C, Mehdi SQ, Torroni A, McElreavey K (2004) Where West meets East: the complex mtDNA landscape of the southwest and central Asian corridor. Am J Hum Genet 74:827–845
Reidla M, Kivisild T, Metspalu E, Kaldma K, Tambets K, Tolk HV, Parik J, Loogvali EL, Derenko M, Malyarchuk B, Bermisheva M, Zhadanov S, Pennarun E, Gubina M, Golubenko M, Damba L, Fedorova S, Gusar V, Grechanina E, Mikerezi I, Moisan JP, Chaventre A, Khusnutdinova E, Osipova L, Stepanov V, Voevoda M, Achilli A, Rengo C, Rickards O, De Stefano GF, Papiha S, Beckman L, Janicijevic B, Rudan P, Anagnou N, Michalodimitrakis E, Koziel S, Usanga E, Geberhiwot T, Herrnstadt C, Howell N, Torroni A, Villems R (2003) Origin and diffusion of mtDNA haplogroup X. Am J Hum Genet 73:1178–1190
Richards M, Macaulay V, Hickey E, Vega E, Sykes B, Guida V, Rengo C, Sellitto D, Cruciani F, Kivisild T, Villems R, Thomas M, Rychkov S, Rychkov O, Rychkov Y, Golge M, Dimitrov D, Hill E, Bradley D, Romano V, Cali F, Vona G, Demaine A, Papiha S, Triantaphyllidis C, Stefanescu G, Hatina J, Belledi M, Di Rienzo A, Novelletto A, Oppenheim A, Norby S, Al-Zaheri N, Santachiara-Benerecetti S, Scozari R, Torroni A, Bandelt HJ (2000) Tracing European founder lineages in the Near Eastern mtDNA pool. Am J Hum Genet 67:1251–7126 Nov
Rogers AR, Harpending HC (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552–569
Salas A, Richards M, De la FT, Lareu MV, Sobrino B, Sanchez-Diz P, Macaulay V, Carracedo A (2002) The making of the African mtDNA landscape. Am J Hum Genet 71:1082–1111
Schurr T, Wallace D (2002) Mitochondrial DNA diversity in Southeast Asian populations. Hum Biol 74:431–452
Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan J-P, Chaventré A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Gölge M, Mikerezi I, Usanga E, Villems R (2004) Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia. Mol Biol Evol 21:2012–2021
Torroni A, Rengo C, Guida V, Cruciani F, Sellitto D, Coppa A, Calderon FL, Simionati B, Valle G, Richards M, Macaulay V, Scozzari R (2001) Do the four clades of the mtDNA haplogroup L2 evolve at different rates. Am J Hum Genet 69:1348–1356
Watson E, Forster P, Richards M, Bandelt HJ (1997) Mitochondrial footprints of human expansions in Africa. Am J Hum Genet 61:691–704
Wilson FH, Hariri A, Farhi A, Zhao H, Petersen KF, Toka HR, Nelson-Williams C, Raja KM, Kashgarian M, Shulman GI, Scheinman SJ, Lifton RP (2004) A cluster of metabolic defects caused by mutation in a mitochondrial tRNA. Science 306:1190–1194
Acknowledgements
We thank Heather Williams, Kimberly Watson, Rebecca Just, Anita Brandstätter, and Walther Parson for assistance with data analysis, database confirmation, and haplogroup assignment. The opinions and assertions contained herein are solely those of the authors and are not to be construed as official or as views of the US Department of Defense or the US Department of the Army.
Author information
Authors and Affiliations
Corresponding author
Electronic supplementary material
Below is the link to the electronic supplementary material.
Table S1
mtDNA haplotypes and haplogroup associations in a population of Vietnamese individuals. Listed haplotypes include insertions at 16193, 309, and 573. Haplotypes with point heteroplasmies are listed separate from the single molecule haplotypes with which they are consistent (DOC 204 KB).
Rights and permissions
About this article
Cite this article
Irwin, J.A., Saunier, J.L., Strouss, K.M. et al. Mitochondrial control region sequences from a Vietnamese population sample. Int J Legal Med 122, 257–259 (2008). https://doi.org/10.1007/s00414-007-0205-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00414-007-0205-3