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Molecular diagnostic alterations in squamous cell carcinoma of the head and neck and potential diagnostic applications

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Abstract

Head and neck squamous cell carcinoma (HNSCC) is a common malignancy that continues to be difficult to treat and cure. In many organ systems and tumor types, there have been significant advances in the understanding of the molecular basis for tumorigenesis, disease progression and genetic implications for therapeutics. Although tumorigenesis pathways and the molecular etiologies of HNSCC have been extensively studied, there are still very few diagnostic clinical applications used in practice today. This review discusses current clinically applicable molecular markers, including viral detection of Epstein–Barr virus and human papillomavirus, and molecular targets that are used in diagnosis and management of HNSCC. The common oncogenes EGFR, RAS, CCND1, BRAF, and PIK3CA and tumor suppressor genes p53, CDKN2A and NOTCH are discussed for their associations with HNSCC. Discussion of markers with potential future applications is also included, with a focus on molecular alterations associated with targeted therapy resistance.

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References

  1. Thompson MP, Kurzrock R (2004) Epstein-Barr virus and cancer. Clin Cancer Res 10(3):803–821

    CAS  PubMed  Google Scholar 

  2. Chan AT (2010) Nasopharyngeal carcinoma. Ann Oncol 21(Suppl 7):vii308–vii312

    Google Scholar 

  3. Tao Q, Chan AT (2007) Nasopharyngeal carcinoma: molecular pathogenesis and therapeutic developments. Expert Rev Mol Med 9(12):1–24

    PubMed  Google Scholar 

  4. Cao SM, Simons MJ, Qian CN (2011) The prevalence and prevention of nasopharyngeal carcinoma in China. Chin J Cancer 30(2):114–119

    CAS  PubMed  Google Scholar 

  5. Chan KC, Lo YM (2002) Circulating EBV DNA as a tumor marker for nasopharyngeal carcinoma. Semin Cancer Biol 12(6):489–496

    CAS  PubMed  Google Scholar 

  6. Lo YM (2001) Prognostic implication of pretreatment plasma/serum concentration of Epstein-Barr virus DNA in nasopharyngeal carcinoma. Biomed Pharmacother 55(7):362–365

    CAS  PubMed  Google Scholar 

  7. Wei WI, Sham JS (2005) Nasopharyngeal carcinoma. Lancet 365(9476):2041–2054

    PubMed  Google Scholar 

  8. Brennan B (2006) Nasopharyngeal carcinoma. Orphanet J Rare Dis 1:23

    PubMed  PubMed Central  Google Scholar 

  9. Resta L, Ricco R, Santangelo A (1983) Morphologic and classificatory considerations about 140 cases of carcinoma of the nasopharynx. Tumori 69(4):313–321

    CAS  PubMed  Google Scholar 

  10. Döhnert G (1971) Lymphoepithelioma Schmincke–Regaud. Virchows Arch A Pathol Pathol Anat 352(3):279–284

    PubMed  Google Scholar 

  11. Singhi AD, Stelow EB, Mills SE, Westra WH (2010) Lymphoepithelial-like carcinoma of the oropharynx: a morphologic variant of HPV-related head and neck carcinoma. Am J Surg Pathol 34(6):800–805

    PubMed  Google Scholar 

  12. Carpenter DH, El-Mofty SK, Lewis JS Jr (2011) Undifferentiated carcinoma of the oropharynx: a human papillomavirus-associated tumor with a favorable prognosis. Mod Pathol 24(10):1306–1312

    CAS  PubMed  Google Scholar 

  13. Maxwell JH, Kumar B, Feng FY, McHugh JB, Cordell KG, Eisbruch A et al. (2010) HPV-positive/p16-positive/EBV-negative nasopharyngeal carcinoma in white North Americans. Head Neck 32(5):562–567

    PubMed  PubMed Central  Google Scholar 

  14. Li X, Fasano R, Wang E, Yao KT, Marincola FM (2009) HLA associations with nasopharyngeal carcinoma. Curr Mol Med 9(6):751–765

    CAS  PubMed  PubMed Central  Google Scholar 

  15. Yoshizaki T, Ito M, Murono S, Wakisaka N, Kondo S, Endo K (2012) Current understanding and management of nasopharyngeal carcinoma. Auris Nasus Larynx 39(2):137–144

    PubMed  Google Scholar 

  16. Iwakiri D, Takada K (2010) Role of EBERs in the pathogenesis of EBV infection. Adv Cancer Res 107:119–136

    CAS  PubMed  Google Scholar 

  17. Gulley ML, Tang W (2008) Laboratory assays for Epstein-Barr virus-related disease. J Mol Diagn 10(4):279–292

    PubMed  PubMed Central  Google Scholar 

  18. Dahlstrom KR, Adler-Storthz K, Etzel CJ, Liu Z, Dillon L, El-Naggar AK et al. (2003) Human papillomavirus type 16 infection and squamous cell carcinoma of the head and neck in never-smokers: a matched pair analysis. Clin Cancer Res 9(7):2620–2626

    PubMed  Google Scholar 

  19. El-Mofty SK, Lu DW (2003) Prevalence of human papillomavirus type 16 DNA in squamous cell carcinoma of the palatine tonsil, and not the oral cavity, in young patients: a distinct clinicopathologic and molecular disease entity. Am J Surg Pathol 27(11):1463–1470

    PubMed  Google Scholar 

  20. Marur S, D’Souza G, Westra WH, Forastiere AA (2010) HPV-associated head and neck cancer: a virus-related cancer epidemic. Lancet Oncol 11(8):781–789

    PubMed  Google Scholar 

  21. Snow AN, Laudadio J (2010) Human papillomavirus detection in head and neck squamous cell carcinomas. Adv Anat Pathol 17(6):394–403

    CAS  PubMed  Google Scholar 

  22. Gillison ML, D’Souza G, Westra W, Sugar E, Xiao W, Begum S et al. (2008) Distinct risk factor profiles for human papillomavirus type 16-positive and human papillomavirus type 16-negative head and neck cancers. J Natl Cancer Inst 100(6):407–420

    PubMed  Google Scholar 

  23. Westra TA, Rozenbaum MH, Rogoza RM, Nijman HW, Daemen T, Postma MJ et al. (2011) Until which age should women be vaccinated against HPV infection? Recommendation based on cost-effectiveness analyses. J Infect Dis 204(3):377–384

    PubMed  Google Scholar 

  24. Fakhry C, Westra WH, Li S, Cmelak A, Ridge JA, Pinto H et al. (2008) Improved survival of patients with human papillomavirus-positive head and neck squamous cell carcinoma in a prospective clinical trial. J Natl Cancer Inst 100(4):261–269

    CAS  PubMed  Google Scholar 

  25. D’Souza G, Kreimer AR, Viscidi R, Pawlita M, Fakhry C, Koch WM et al. (2007) Case-control study of human papillomavirus and oropharyngeal cancer. N Engl J Med 356(19):1944–1956

    PubMed  Google Scholar 

  26. Ukpo OC, Pritchett CV, Lewis JE, Weaver AL, Smith DI, Moore EJ (2009) Human papillomavirus-associated oropharyngeal squamous cell carcinomas: primary tumor burden and survival in surgical patients. Ann Otol Rhinol Laryngol 118(5):368–373

    PubMed  Google Scholar 

  27. Thavaraj S, Stokes A, Guerra E, Bible J, Halligan E, Long A et al. (2011) Evaluation of human papillomavirus testing for squamous cell carcinoma of the tonsil in clinical practice. J Clin Pathol 64(4):308–312

    PubMed  Google Scholar 

  28. Sugiyama M, Bhawal UK, Kawamura M, Ishioka Y, Shigeishi H, Higashikawa K et al. (2007) Human papillomavirus-16 in oral squamous cell carcinoma: clinical correlates and 5-year survival. Br J Oral Maxillofac Surg 45(2):116–122

    PubMed  Google Scholar 

  29. Goldenberg D, Begum S, Westra WH, Khan Z, Sciubba J, Pai SI et al. (2008) Cystic lymph node metastasis in patients with head and neck cancer: an HPV-associated phenomenon. Head Neck 30(7):898–903

    PubMed  Google Scholar 

  30. Loyo M, Johnson JT, Westra WH, Chiosea SI, Gourin CG (2011) Management of the “violated neck” in the era of chemoradiation. Laryngoscope 121(11):2349–2358

    PubMed  Google Scholar 

  31. Harwick RD (1991) Cervical metastases from an occult primary site. Semin Surg Oncol 7(1):2–8

    CAS  PubMed  Google Scholar 

  32. Westra WH (2012) The morphologic profile of HPV-related head and neck squamous carcinoma: implications for diagnosis, prognosis, and clinical management. Head Neck Pathol 6(Suppl 1):S48–S54

    PubMed  Google Scholar 

  33. Mendelsohn AH, Lai CK, Shintaku IP, Elashoff DA, Dubinett SM, Abemayor E et al. (2010) Histopathologic findings of HPV and p16 positive HNSCC. Laryngoscope 120(9):1788–1794

    PubMed  Google Scholar 

  34. Begum S, Westra WH (2008) Basaloid squamous cell carcinoma of the head and neck is a mixed variant that can be further resolved by HPV status. Am J Surg Pathol 32(7):1044–1050

    PubMed  Google Scholar 

  35. Friedrich RE, Sperber C, Jakel T, Roser K, Loning T (2010) Basaloid lesions of oral squamous epithelial cells and their association with HPV infection and P16 expression. Anticancer Res 30(5):1605–1612

    CAS  PubMed  Google Scholar 

  36. Thariat J, Badoual C, Faure C, Butori C, Marcy PY, Righini CA (2010) Basaloid squamous cell carcinoma of the head and neck: role of HPV and implication in treatment and prognosis. J Clin Pathol 63(10):857–866

    CAS  PubMed  Google Scholar 

  37. Weiss D, Koopmann M, Rudack C (2010) Prevalence and impact on clinicopathological characteristics of human papillomavirus-16 DNA in cervical lymph node metastases of head and neck squamous cell carcinoma. Head Neck 33(6):856–862

    PubMed  Google Scholar 

  38. de Roda Husman AM, Snijders PJ, Stel HV, van den Brule AJ, Meijer CJ, Walboomers JM (1995) Processing of long-stored archival cervical smears for human papillomavirus detection by the polymerase chain reaction. Br J Cancer 72(2):412–417

  39. Chan PK, Chan DP, To KF, Yu MY, Cheung JL, Cheng AF (2001) Evaluation of extraction methods from paraffin wax embedded tissues for PCR amplification of human and viral DNA. J Clin Pathol 54(5):401–403

    CAS  PubMed  Google Scholar 

  40. Westra WH (2012) Detection of human papillomavirus in clinical samples. Otolaryngol Clin North Am 45(4):765–777

    PubMed  Google Scholar 

  41. Singhi AD, Westra WH (2010) Comparison of human papillomavirus in situ hybridization and p16 immunohistochemistry in the detection of human papillomavirus-associated head and neck cancer based on a prospective clinical experience. Cancer 116(9):2166–2173

    PubMed  Google Scholar 

  42. Gao G, Chernock RD, Gay HA, Thorstad WL, Zhang TR, Wang H et al. (2012) A novel RT-PCR method for quantification of human papillomavirus transcripts in archived tissues and its application in oropharyngeal cancer prognosis. Int J Cancer 132(4):882–890

    Google Scholar 

  43. Jordan RC, Lingen MW, Perez-Ordonez B, He X, Pickard R, Koluder M et al. (2012) Validation of methods for oropharyngeal cancer HPV status determination in US cooperative group trials. Am J Surg Pathol 36(7):945–954

    PubMed  Google Scholar 

  44. Gao G, Chernock RD, Gay HA, Thorstad WL, Zhang TR, Wang H et al. (2013) A novel RT-PCR method for quantification of human papillomavirus transcripts in archived tissues and its application in oropharyngeal cancer prognosis. Int J Cancer 132(4):882–890

    CAS  PubMed  Google Scholar 

  45. Schache AG, Liloglou T, Risk JM, Filia A, Jones TM, Sheard J et al. (2011) Evaluation of human papilloma virus diagnostic testing in oropharyngeal squamous cell carcinoma: sensitivity, specificity, and prognostic discrimination. Clin Cancer Res 17(19):6262–6271

    CAS  PubMed  PubMed Central  Google Scholar 

  46. Bishop JA, Maleki Z, Valsamakis A, Ogawa T, Chang X, Pai SI et al. (2012) Application of the hybrid capture 2 assay to squamous cell carcinomas of the head and neck: a convenient liquid-phase approach for the reliable determination of human papillomavirus status. Cancer Cytopathol 120(1):18–25

    CAS  PubMed  PubMed Central  Google Scholar 

  47. Begum S, Gillison ML, Ansari-Lari MA, Shah K, Westra WH (2003) Detection of human papillomavirus in cervical lymph nodes: a highly effective strategy for localizing site of tumor origin. Clin Cancer Res 9(17):6469–6475

    CAS  PubMed  Google Scholar 

  48. Begum S, Gillison ML, Nicol TL, Westra WH (2007) Detection of human papillomavirus-16 in fine-needle aspirates to determine tumor origin in patients with metastatic squamous cell carcinoma of the head and neck. Clin Cancer Res 13(4):1186–1191

    CAS  PubMed  Google Scholar 

  49. Ukpo OC, Flanagan JJ, Ma XJ, Luo Y, Thorstad WL, Lewis JS Jr (2011) High-risk human papillomavirus E6/E7 mRNA detection by a novel in situ hybridization assay strongly correlates with p16 expression and patient outcomes in oropharyngeal squamous cell carcinoma. Am J Surg Pathol 35(9):1343–1350

    PubMed  Google Scholar 

  50. Bishop JA, Ma XJ, Wang H, Luo Y, Illei PB, Begum S et al. (2012) Detection of transcriptionally active high-risk HPV in patients with head and neck squamous cell carcinoma as visualized by a novel E6/E7 mRNA in situ hybridization method. Am J Surg Pathol 36(12):1874–1882

    Google Scholar 

  51. El-Naggar AK, Westra WH (2012) p16 expression as a surrogate marker for HPV-related oropharyngeal carcinoma: a guide for interpretative relevance and consistency. Head Neck 34(4):459–461

    PubMed  Google Scholar 

  52. Lau HY, Brar S, Klimowicz AC, Petrillo SK, Hao D, Brockton NT et al. (2010) Prognostic significance of p16 in locally advanced squamous cell carcinoma of the head and neck treated with concurrent cisplatin and radiotherapy. Head Neck 33(2):251–256

    Google Scholar 

  53. Fischer CA, Kampmann M, Zlobec I, Green E, Tornillo L, Lugli A et al. (2010) p16 expression in oropharyngeal cancer: its impact on staging and prognosis compared with the conventional clinical staging parameters. Ann Oncol 21(10):1961–1966

    CAS  PubMed  Google Scholar 

  54. Deschoolmeester V, Van Marck V, Baay M, Weyn C, Vermeulen P, Van Marck E et al. (2010) Detection of HPV and the role of p16INK4A overexpression as a surrogate marker for the presence of functional HPV oncoprotein E7 in colorectal cancer. BMC Cancer 10:117

    PubMed  PubMed Central  Google Scholar 

  55. Chernock RD, Wang X, Gao G, Lewis JS Jr, Zhang Q, Thorstad WL et al. (2012) Detection and significance of human papillomavirus, CDKN2A(p16) and CDKN1A(p21) expression in squamous cell carcinoma of the larynx. Mod Pathol 26(2):223–231

    Google Scholar 

  56. Lewis JS Jr, Chernock RD, Ma XJ, Flanagan JJ, Luo Y, Gao G et al. (2012) Partial p16 staining in oropharyngeal squamous cell carcinoma: extent and pattern correlate with human papillomavirus RNA status. Mod Pathol 25(9):1212–1220

    CAS  PubMed  Google Scholar 

  57. Ma C, Lewis J Jr (2012) Small biopsy specimens reliably indicate p16 expression status of oropharyngeal squamous cell carcinoma. Head Neck Pathol 6(2):208–215

    PubMed  PubMed Central  Google Scholar 

  58. Lewis JS Jr, Thorstad WL, Chernock RD, Haughey BH, Yip JH, Zhang Q et al. (2010) p16 positive oropharyngeal squamous cell carcinoma: an entity with a favorable prognosis regardless of tumor HPV status. Am J Surg Pathol 34(8):1088–1096

    PubMed  Google Scholar 

  59. Sahu N, Grandis JR (2011) New advances in molecular approaches to head and neck squamous cell carcinoma. Anticancer Drugs 22(7):656–664

    CAS  PubMed  PubMed Central  Google Scholar 

  60. Smilek P, Neuwirthova J, Jarkovsky J, Dusek L, Rottenberg J, Kostrica R et al. (2012) Epidermal growth factor receptor (EGFR) expression and mutations in the EGFR signaling pathway in correlation with anti-EGFR therapy in head and neck squamous cell carcinomas. Neoplasma 59(5):508–515

    CAS  PubMed  Google Scholar 

  61. Chau NG, Perez-Ordonez B, Zhang K, Pham NA, Ho J, Zhang T et al. (2011) The association between EGFR variant III, HPV, p16, c-MET, EGFR gene copy number and response to EGFR inhibitors in patients with recurrent or metastatic squamous cell carcinoma of the head and neck. Head Neck Oncol 3:11

    CAS  PubMed  PubMed Central  Google Scholar 

  62. Ciardiello F, Tortora G (2003) Epidermal growth factor receptor (EGFR) as a target in cancer therapy: understanding the role of receptor expression and other molecular determinants that could influence the response to anti-EGFR drugs. Eur J Cancer 39(10):1348–1354

    CAS  PubMed  Google Scholar 

  63. Atkins D, Reiffen KA, Tegtmeier CL, Winther H, Bonato MS, Storkel S (2004) Immunohistochemical detection of EGFR in paraffin-embedded tumor tissues: variation in staining intensity due to choice of fixative and storage time of tissue sections. J Histochem Cytochem 52(7):893–901

    CAS  PubMed  Google Scholar 

  64. Herbst R, Shin D (2002) Monoclonal antibodies to target epidermal growth factor receptor-positive tumors: a new paradigm for cancer therapy. Cancer 94(5):1593–1611

    CAS  PubMed  Google Scholar 

  65. Kim ES, Khuri FR, Herbst RS (2001) Epidermal growth factor receptor biology (IMC-C225). Curr Opin Oncol 13(6):506–513

    CAS  PubMed  Google Scholar 

  66. Cripps C, Winquist E, Devries MC, Stys-Norman D, Gilbert R (2010) Epidermal growth factor receptor targeted therapy in stages III and IV head and neck cancer. Curr Oncol 17(3):37–48

    CAS  PubMed  PubMed Central  Google Scholar 

  67. Kobayashi S, Boggon TJ, Dayaram T, Janne PA, Kocher O, Meyerson M et al. (2005) EGFR mutation and resistance of non-small-cell lung cancer to gefitinib. N Engl J Med 352(8):786–792

    CAS  PubMed  Google Scholar 

  68. Kosaka T, Yatabe Y, Endoh H, Kuwano H, Takahashi T, Mitsudomi T (2004) Mutations of the epidermal growth factor receptor gene in lung cancer: biological and clinical implications. Cancer Res 64(24):8919–8923

    CAS  PubMed  Google Scholar 

  69. Hama T, Yuza Y, Suda T, Saito Y, Norizoe C, Kato T et al. (2012) Functional mutation analysis of EGFR family genes and corresponding lymph node metastases in head and neck squamous cell carcinoma. Clin Exp Metastasis 29(1):19–25

    CAS  PubMed  Google Scholar 

  70. Szabo B, Nelhubel GA, Karpati A, Kenessey I, Jori B, Szekely C et al. (2011) Clinical significance of genetic alterations and expression of epidermal growth factor receptor (EGFR) in head and neck squamous cell carcinomas. Oral Oncol 47(6):487–496

    CAS  PubMed  Google Scholar 

  71. Morris LG, Taylor BS, Bivona TG, Gong Y, Eng S, Brennan CW et al. (2011) Genomic dissection of the epidermal growth factor receptor (EGFR)/PI3K pathway reveals frequent deletion of the EGFR phosphatase PTPRS in head and neck cancers. Proc Natl Acad Sci USA 108(47):19024–19029

    CAS  PubMed  Google Scholar 

  72. Lee JW, Soung YH, Kim SY, Nam HK, Park WS, Nam SW et al. (2005) Somatic mutations of EGFR gene in squamous cell carcinoma of the head and neck. Clin Cancer Res 11(8):2879–2882

    CAS  PubMed  Google Scholar 

  73. Sheikh Ali MA, Gunduz M, Nagatsuka H, Gunduz E, Cengiz B, Fukushima K et al. (2008) Expression and mutation analysis of epidermal growth factor receptor in head and neck squamous cell carcinoma. Cancer Sci 99(8):1589–1594

    Google Scholar 

  74. López F, Llorente JL, Oviedo CM, Vivanco B, Alvarez Marcos CÁ, García-Inclán C et al. (2011) Gene amplification and protein overexpression of EGFR and ERBB2 in sinonasal squamous cell carcinoma. Cancer 118(7):1818–1826

    Google Scholar 

  75. Licitra L, Mesia R, Rivera F, Remenar E, Hitt R, Erfan J et al. (2011) Evaluation of EGFR gene copy number as a predictive biomarker for the efficacy of cetuximab in combination with chemotherapy in the first-line treatment of recurrent and/or metastatic squamous cell carcinoma of the head and neck: EXTREME study. Ann Oncol 22(5):1078–1087

    CAS  PubMed  Google Scholar 

  76. Rodrigo JP, Ramos S, Lazo PS, Alvarez I, Suárez C (1996) Amplification of ERBB oncogenes in squamous cell carcinomas of the head and neck. Eur J Cancer 32A(11):2004–2010

    CAS  PubMed  Google Scholar 

  77. Modjtahedi H, Khelwatty SA, Kirk RS, Seddon AM, Essapen S, Del Vecchio CA et al. (2012) Immunohistochemical discrimination of wild-type EGFR from EGFRvIII in fixed tumour specimens using anti-EGFR mAbs ICR9 and ICR10. Br J Cancer 106(5):883–888

    CAS  PubMed  PubMed Central  Google Scholar 

  78. Langer CJ (2012) Exploring biomarkers in head and neck cancer. Cancer 118(16):3882–3892

    CAS  PubMed  Google Scholar 

  79. Sheu JJ, Hua CH, Wan L, Lin YJ, Lai MT, Tseng HC et al. (2009) Functional genomic analysis identified epidermal growth factor receptor activation as the most common genetic event in oral squamous cell carcinoma. Cancer Res 69(6):2568–2576

    CAS  PubMed  Google Scholar 

  80. Tsui IF, Poh CF, Garnis C, Rosin MP, Zhang L, Lam WL (2009) Multiple pathways in the FGF signaling network are frequently deregulated by gene amplification in oral dysplasias. Int J Cancer 125(9):2219–2228

    CAS  PubMed  PubMed Central  Google Scholar 

  81. Feng Z, Guo W, Zhang C, Xu Q, Zhang P, Sun J et al. (2011) CCND1 as a predictive biomarker of neoadjuvant chemotherapy in patients with locally advanced head and neck squamous cell carcinoma. PLoS ONE 6(10):e26399

    CAS  PubMed  PubMed Central  Google Scholar 

  82. Kaminagakura E, Werneck da Cunha I, Soares FA, Nishimoto IN, Kowalski LP (2011) CCND1 amplification and protein overexpression in oral squamous cell carcinoma of young patients. Head Neck 33(10):1413–1419

    Google Scholar 

  83. Nadal A, Jares P, Pinyol M, Conde L, Romeu C, Fernandez PL et al. (2007) Association of CDK4 and CCND1 mRNA overexpression in laryngeal squamous cell carcinomas occurs without CDK4 amplification. Virchows Arch 450(2):161–167

    CAS  PubMed  Google Scholar 

  84. Ragin CC, Taioli E, Weissfeld JL, White JS, Rossie KM, Modugno F et al. (2006) 11q13 amplification status and human papillomavirus in relation to p16 expression defines two distinct etiologies of head and neck tumours. Br J Cancer 95(10):1432–1438

    CAS  PubMed  PubMed Central  Google Scholar 

  85. Rodrigo JP, García LA, Ramos S, Lazo PS, Suárez C (2000) EMS1 gene amplification correlates with poor prognosis in squamous cell carcinomas of the head and neck. Clin Cancer Res 6(8):3177–3182

    CAS  PubMed  Google Scholar 

  86. Rodrigo JP, Garcia-Carracedo D, Garcia LA, Menendez S, Allonca E, Gonzalez MV et al. (2009) Distinctive clinicopathological associations of amplification of the cortactin gene at 11q13 in head and neck squamous cell carcinomas. J Pathol 217(4):516–523

    CAS  PubMed  Google Scholar 

  87. Murray S, Karavasilis V, Bobos M, Razis E, Papadopoulos S, Christodoulou C et al. (2012) Molecular predictors of response to tyrosine kinase inhibitors in patients with non-small-cell lung cancer. J Exp Clin Cancer Res 31(1):77

    CAS  PubMed  Google Scholar 

  88. Siddiqui AD, Piperdi B (2010) KRAS mutation in colon cancer: a marker of resistance to EGFR-I therapy. Ann Surg Oncol 17(4):1168–1176

    PubMed  PubMed Central  Google Scholar 

  89. Stransky N, Egloff AM, Tward AD, Kostic AD, Cibulskis K, Sivachenko A et al. (2011) The mutational landscape of head and neck squamous cell carcinoma. Science 333(6046):1157–1160

    CAS  PubMed  PubMed Central  Google Scholar 

  90. Agrawal N, Frederick MJ, Pickering CR, Bettegowda C, Chang K, Li RJ et al. (2011) Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1. Science 333(6046):1154–1157

    CAS  PubMed  PubMed Central  Google Scholar 

  91. Suda T, Hama T, Kondo S, Yuza Y, Yosikawa M, Urashima M et al. (2012) Copy number amplification of the PIK3CA gene is associated with poor prognosis in non-lymph node metastatic head and neck squamous cell carcinoma. BMC Cancer 12(1):416

    CAS  PubMed  PubMed Central  Google Scholar 

  92. Seo JS, Ju YS, Lee WC, Shin JY, Lee JK, Bleazard T et al. (2012) The transcriptional landscape and mutational profile of lung adenocarcinoma. Genome Res 22(11):2109–2119

    CAS  PubMed  Google Scholar 

  93. Weber A, Langhanki L, Sommerer F, Markwarth A, Wittekind C, Tannapfel A (2003) Mutations of the BRAF gene in squamous cell carcinoma of the head and neck. Oncogene 22(30):4757–4759

    CAS  PubMed  Google Scholar 

  94. Pedrero JM, Carracedo DG, Pinto CM, Zapatero AH, Rodrigo JP, Nieto CS et al. (2005) Frequent genetic and biochemical alterations of the PI 3-K/AKT/PTEN pathway in head and neck squamous cell carcinoma. Int J Cancer 114(2):242–248

    CAS  PubMed  Google Scholar 

  95. Loyo M, Li RJ, Bettegowda C, Pickering CR, Frederick MJ, Myers JN et al. (2013) Lessons learned from next-generation sequencing in head and neck cancer. Head Neck 35(3):454–463

    Google Scholar 

  96. Cohen Y, Goldenberg-Cohen N, Shalmon B, Shani T, Oren S, Amariglio N et al. (2011) Mutational analysis of PTEN/PIK3CA/AKT pathway in oral squamous cell carcinoma. Oral Oncol 47(10):946–950

    CAS  PubMed  Google Scholar 

  97. Murugan AK, Hong NT, Fukui Y, Munirajan AK, Tsuchida N (2008) Oncogenic mutations of the PIK3CA gene in head and neck squamous cell carcinomas. Int J Oncol 32(1):101–111

    CAS  PubMed  Google Scholar 

  98. Pal I, Mandal M (2012) PI3K and Akt as molecular targets for cancer therapy: current clinical outcomes. Acta Pharmacol Sin 33(12):1441–1458

    Google Scholar 

  99. Janku F, Tsimberidou AM, Garrido-Laguna I, Wang X, Luthra R, Hong DS et al. (2011) PIK3CA mutations in patients with advanced cancers treated with PI3K/AKT/mTOR axis inhibitors. Mol Cancer Ther 10(3):558–565

    CAS  PubMed  PubMed Central  Google Scholar 

  100. Bouali S, Chretien AS, Ramacci C, Rouyer M, Becuwe P, Merlin JL (2009) PTEN expression controls cellular response to cetuximab by mediating PI3K/AKT and RAS/RAF/MAPK downstream signaling in KRAS wild-type, hormone refractory prostate cancer cells. Oncol Rep 21(3):731–735

    CAS  PubMed  Google Scholar 

  101. Suda K, Mizuuchi H, Maehara Y, Mitsudomi T (2012) Acquired resistance mechanisms to tyrosine kinase inhibitors in lung cancer with activating epidermal growth factor receptor mutation-diversity, ductility, and destiny. Cancer Metastasis Rev 31(3–4):807–814

    Google Scholar 

  102. Allory Y, Culine S, de la Taille A (2011) Kidney cancer pathology in the new context of targeted therapy. Pathobiology 78(2):90–98

    PubMed  PubMed Central  Google Scholar 

  103. Linehan WM, Bratslavsky G, Pinto PA, Schmidt LS, Neckers L, Bottaro DP et al. (2010) Molecular diagnosis and therapy of kidney cancer. Ann Rev Med 61:329–343

    CAS  PubMed  PubMed Central  Google Scholar 

  104. Canadas I, Rojo F, Arumi-Uria M, Rovira A, Albanell J, Arriola E (2010) C-MET as a new therapeutic target for the development of novel anticancer drugs. Clin Transl Oncol 12(4):253–260

    CAS  PubMed  Google Scholar 

  105. Belalcazar A, Azana D, Perez CA, Raez LE, Santos ES (2012) Targeting the Met pathway in lung cancer. Expert Rev Anticancer Ther 12(4):519–528

    CAS  PubMed  Google Scholar 

  106. Cheng L, Alexander RE, Maclennan GT, Cummings OW, Montironi R, Lopez-Beltran A et al. (2012) Molecular pathology of lung cancer: key to personalized medicine. Mod Pathol 25(3):347–369

    CAS  PubMed  Google Scholar 

  107. Seiwert TY, Jagadeeswaran R, Faoro L, Janamanchi V, Nallasura V, El Dinali M et al. (2009) The MET receptor tyrosine kinase is a potential novel therapeutic target for head and neck squamous cell carcinoma. Cancer Res 69(7):3021–3031

    CAS  PubMed  PubMed Central  Google Scholar 

  108. Di Renzo MF, Olivero M, Martone T, Maffe A, Maggiora P, Stefani AD et al. (2000) Somatic mutations of the MET oncogene are selected during metastatic spread of human HNSC carcinomas. Oncogene 19(12):1547–1555

    PubMed  Google Scholar 

  109. Muller D, Millon R, Eber M, Methlin G, Abecassis J (1995) Alteration of the C-met oncogene locus in human head and neck-carcinoma. Oncol Rep 2(5):847–850

    CAS  PubMed  Google Scholar 

  110. Ghadjar P, Blank-Liss W, Simcock M, Hegyi I, Beer KT, Moch H et al. (2009) MET Y1253D-activating point mutation and development of distant metastasis in advanced head and neck cancers. Clin Exp Metastasis 26(7):809–815

    CAS  PubMed  Google Scholar 

  111. Knowles LM, Stabile LP, Egloff AM, Rothstein ME, Thomas SM, Gubish CT et al. (2009) HGF and c-Met participate in paracrine tumorigenic pathways in head and neck squamous cell cancer. Clin Cancer Res 15(11):3740–3750

    CAS  PubMed  PubMed Central  Google Scholar 

  112. Lim YC, Han JH, Kang HJ, Kim YS, Lee BH, Choi EC et al. (2012) Overexpression of c-Met promotes invasion and metastasis of small oral tongue carcinoma. Oral Oncol 48(11):1114–1119

    CAS  PubMed  Google Scholar 

  113. Lo Muzio L, Farina A, Rubini C, Coccia E, Capogreco M, Colella G et al. (2006) Effect of c-Met expression on survival in head and neck squamous cell carcinoma. Tumour Biol 27(3):115–121

    Google Scholar 

  114. Seiwert T, Sarantopoulos J, Kallender H, McCallum S, Keer HN, Blumenschein G Jr (2012) Phase II trial of single-agent foretinib (GSK1363089) in patients with recurrent or metastatic squamous cell carcinoma of the head and neck. Invest New Drugs [Epub ahead of print]

  115. Bauman JE, Michel LS, Chung CH (2012) New promising molecular targets in head and neck squamous cell carcinoma. Curr Opin Oncol 24(3):235–242

    CAS  PubMed  Google Scholar 

  116. Mehra R, Serebriiskii IG, Dunbrack RL Jr, Robinson MK, Burtness B, Golemis EA (2011) Protein-intrinsic and signaling network-based sources of resistance to EGFR- and ErbB family-targeted therapies in head and neck cancer. Drug Resist Updat 14(6):260–279

    CAS  PubMed  PubMed Central  Google Scholar 

  117. Knudson AG Jr (1971) Mutation and cancer: statistical study of retinoblastoma. Proc Natl Acad Sci USA 68(4):820–823

    PubMed  Google Scholar 

  118. Knudson AG Jr (1976) Genetics and the etiology of childhood cancer. Pediatr Res 10(5):513–517

    PubMed  Google Scholar 

  119. Nadal A, Cardesa A (2003) Molecular biology of laryngeal squamous cell carcinoma. Virchows Arch 442(1):1–7

    CAS  PubMed  Google Scholar 

  120. Mitra S, Banerjee S, Misra C, Singh RK, Roy A, Sengupta A et al. (2007) Interplay between human papilloma virus infection and p53 gene alterations in head and neck squamous cell carcinoma of an Indian patient population. J Clin Pathol 60(9):1040–1047

    CAS  PubMed  Google Scholar 

  121. Gold KA, Kim ES (2009) Role of molecular markers and gene profiling in head and neck cancers. Curr Opin Oncol 21(3):206–211

    CAS  PubMed  Google Scholar 

  122. Shah NG, Trivedi TI, Tankshali RA, Goswami JV, Jetly DH, Shukla SN et al. (2009) Prognostic significance of molecular markers in oral squamous cell carcinoma: a multivariate analysis. Head Neck 31(12):1544–1556

    PubMed  Google Scholar 

  123. Acin S, Li Z, Mejia O, Roop DR, El-Naggar AK, Caulin C (2011) Gain-of-function mutant p53 but not p53 deletion promotes head and neck cancer progression in response to oncogenic K-ras. J Pathol 225(4):479–489

    CAS  PubMed  Google Scholar 

  124. Tabor MP, Brakenhoff RH, van Houten VM, Kummer JA, Snel MH, Snijders PJ et al. (2001) Persistence of genetically altered fields in head and neck cancer patients: biological and clinical implications. Clin Cancer Res 7(6):1523–1532

    CAS  PubMed  Google Scholar 

  125. Leemans CR, Braakhuis BJ, Brakenhoff RH (2011) The molecular biology of head and neck cancer. Nat Rev Cancer 11(1):9–22

    CAS  PubMed  Google Scholar 

  126. Graveland AP, Golusinski PJ, Buijze M, Douma R, Sons N, Kuik DJ et al. (2006) Loss of heterozygosity at 9p and p53 immunopositivity in surgical margins predict local relapse in head and neck squamous cell carcinoma. Int J Cancer 128(8):1852–1859

    Google Scholar 

  127. Braakhuis BJ, Snijders PJ, Keune WJ, Meijer CJ, Ruijter-Schippers HJ, Leemans CR et al. (2004) Genetic patterns in head and neck cancers that contain or lack transcriptionally active human papillomavirus. J Natl Cancer Inst 96(13):998–1006

    CAS  PubMed  Google Scholar 

  128. Bolt J, Vo QN, Kim WJ, McWhorter AJ, Thomson J, Hagensee ME et al. (2005) The ATM/p53 pathway is commonly targeted for inactivation in squamous cell carcinoma of the head and neck (SCCHN) by multiple molecular mechanisms. Oral Oncol 41(10):1013–1020

    CAS  PubMed  Google Scholar 

  129. Nathan CO, Amirghahri N, Rice C, Abreo FW, Shi R, Stucker FJ (2002) Molecular analysis of surgical margins in head and neck squamous cell carcinoma patients. Laryngoscope 112(12):2129–2140

    CAS  PubMed  Google Scholar 

  130. Lindenbergh-van der Plas M, Brakenhoff RH, Kuik DJ, Buijze M, Bloemena E, Snijders PJ et al. (2011) Prognostic significance of truncating TP53 mutations in head and neck squamous cell carcinoma. Clin Cancer Res 17(11):3733–3741

  131. Smith BD, Haffty BG (1999) Molecular markers as prognostic factors for local recurrence and radioresistance in head and neck squamous cell carcinoma. Radiat Oncol Investig 7(3):125–144

    CAS  PubMed  Google Scholar 

  132. Perrone F, Suardi S, Pastore E, Casieri P, Orsenigo M, Caramuta S et al. (2006) Molecular and cytogenetic subgroups of oropharyngeal squamous cell carcinoma. Clin Cancer Res 12(22):6643–6651

    CAS  PubMed  Google Scholar 

  133. Skinner HD, Sandulache VC, Ow TJ, Meyn RE, Yordy JS, Beadle BM et al. (2012) TP53 disruptive mutations lead to head and neck cancer treatment failure through inhibition of radiation-induced senescence. Clin Cancer Res 18(1):290–300

    CAS  PubMed  PubMed Central  Google Scholar 

  134. Geurts TW, van Velthuysen ML, Broekman F, van Huysduynen TH, van den Brekel MW, van Zandwijk N et al. (2009) Differential diagnosis of pulmonary carcinoma following head and neck cancer by genetic analysis. Clin Cancer Res 15(3):980–985

    CAS  PubMed  Google Scholar 

  135. Tang M, Pires Y, Schultz M, Duarte I, Gallegos M, Wistuba II (2003) Microsatellite analysis of synchronous and metachronous tumors: a tool for double primary tumor and metastasis assessment. Diagn Mol Pathol 12(3):151–159

    PubMed  Google Scholar 

  136. van Houten VM, Leemans CR, Kummer JA, Dijkstra J, Kuik DJ, van den Brekel MW et al. (2004) Molecular diagnosis of surgical margins and local recurrence in head and neck cancer patients: a prospective study. Clin Cancer Res 10(11):3614–3620

    PubMed  Google Scholar 

  137. Tabor MP, Brakenhoff RH, Ruijter-Schippers HJ, Kummer JA, Leemans CR, Braakhuis BJ (2004) Genetically altered fields as origin of locally recurrent head and neck cancer: a retrospective study. Clin Cancer Res 10(11):3607–3613

    CAS  PubMed  Google Scholar 

  138. van Houten VM, Tabor MP, van den Brekel MW, Kummer JA, Denkers F, Dijkstra J et al. (2002) Mutated p53 as a molecular marker for the diagnosis of head and neck cancer. J Pathol 198(4):476–486

    PubMed  Google Scholar 

  139. Egloff AM, Grandis JR (2012) Molecular pathways: context-dependent approaches to notch targeting as cancer therapy. Clin Cancer Res 18(19):5188–5195

    CAS  PubMed  PubMed Central  Google Scholar 

  140. Mahfouz ME, Rodrigo JP, Takes RP, Elsheikh MN, Rinaldo A, Brakenhoff RH et al. (2010) Current potential and limitations of molecular diagnostic methods in head and neck cancer. Eur Arch Otorhinolaryngol 267(6):851–860

    PubMed  Google Scholar 

  141. Ziober AF, D’Alessandro L, Ziober BL (2010) Is gene expression profiling of head and neck cancers ready for the clinic? Biomark Med 4(4):571–580

    CAS  PubMed  Google Scholar 

  142. Lallemant B, Evrard A, Chambon G, Sabra O, Kacha S, Lallemant JG et al. (2010) Gene expression profiling in head and neck squamous cell carcinoma: clinical perspectives. Head Neck 32(12):1712–1719

    PubMed  Google Scholar 

  143. Mendez E, Lohavanichbutr P, Fan W, Houck JR, Rue TC, Doody DR et al. (2011) Can a metastatic gene expression profile outperform tumor size as a predictor of occult lymph node metastasis in oral cancer patients? Clin Cancer Res 17(8):2466–2473

    CAS  PubMed  PubMed Central  Google Scholar 

  144. Stokes A, Joutsa J, Ala-Aho R, Pitchers M, Pennington CJ, Martin C et al. (2010) Expression profiles and clinical correlations of degradome components in the tumor microenvironment of head and neck squamous cell carcinoma. Clin Cancer Res 16(7):2022–2035

    CAS  PubMed  Google Scholar 

  145. Chen C, Méndez E, Houck J, Fan W, Lohavanichbutr P, Doody D et al. (2008) Gene expression profiling identifies genes predictive of oral squamous cell carcinoma. Cancer Epidemiol Biomarkers Prev 17(8):2152–2162

    CAS  PubMed  PubMed Central  Google Scholar 

  146. Braakhuis BJ, Senft A, de Bree R, de Vries J, Ylstra B, Cloos J et al. (2006) Expression profiling and prediction of distant metastases in head and neck squamous cell carcinoma. J Clin Pathol 59(12):1254–1260

    CAS  PubMed  Google Scholar 

  147. van Hooff SR, Leusink FK, Roepman P, Baatenburg de Jong RJ, Speel EJ, van den Brekel MW et al. (2012) Validation of a gene expression signature for assessment of lymph node metastasis in oral squamous cell carcinoma. J Clin Oncol 30(33):4104–4110

    Google Scholar 

  148. Roepman P, Wessels LF, Kettelarij N, Kemmeren P, Miles AJ, Lijnzaad P et al. (2005) An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas. Nat Genet 37(2):182–186

    CAS  PubMed  Google Scholar 

  149. Leusink FK, van Es RJ, de Bree R, Baatenburg DE, Jong RJ, Holstege FC et al. (2012) Novel diagnostic modalities for the clinically node negative neck in head and neck cancer: expression profiling and sentinel lymph node biopsy. Lancet Oncol 13(12):e554–e561

    Google Scholar 

  150. Braakhuis B, Graveland A, Dijk F, Ylstra B, van Wieringen W, Leemans C et al. (2012) Expression signature in peripheral blood cells for molecular diagnosis of head and neck squamous cell carcinoma. Oral Dis [Epub ahead of print]

  151. Graveland AP, Braakhuis BJ, Eerenstein SE, de Bree R, Bloemena E, de Maaker M et al. (2012) Molecular diagnosis of minimal residual disease in head and neck cancer patients. Cell Oncol 35(5):367–375

    CAS  Google Scholar 

  152. Ferris RL, Stefanika P, Xi L, Gooding W, Seethala RR, Godfrey TE (2012) Rapid molecular detection of metastatic head and neck squamous cell carcinoma as an intraoperative adjunct to sentinel lymph node biopsy. Laryngoscope 122(5):1020–1030

    CAS  PubMed  PubMed Central  Google Scholar 

  153. Gao G, Gay HA, Chernock RD, Zhang TR, Luo J, Thorstad WL et al. (2012) A microRNA expression signature for the prognosis of oropharyngeal squamous cell carcinoma. Cancer 119(1):72–80

    Google Scholar 

  154. Wald AI, Hoskins EE, Wells SI, Ferris RL, Khan SA (2011) Alteration of microRNA profiles in squamous cell carcinoma of the head and neck cell lines by human papillomavirus. Head Neck 33(4):504–512

    PubMed  PubMed Central  Google Scholar 

  155. Christensen BC, Moyer BJ, Avissar M, Ouellet LG, Plaza SL, McClean MD et al. (2009) A let-7 microRNA-binding site polymorphism in the KRAS 3′ UTR is associated with reduced survival in oral cancers. Carcinogenesis 30(6):1003–1007

    CAS  PubMed  Google Scholar 

  156. Nohata N, Sone Y, Hanazawa T, Fuse M, Kikkawa N, Yoshino H et al. (2011) miR-1 as a tumor suppressive microRNA targeting TAGLN2 in head and neck squamous cell carcinoma. Oncotarget 2(1–2):29–42

    PubMed  Google Scholar 

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Correspondence to Alfio Ferlito.

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This paper was written by members of the International Head and Neck Scientific Group (www.IHNSG.com).

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Hunt, J.L., Barnes, L., Lewis, J.S. et al. Molecular diagnostic alterations in squamous cell carcinoma of the head and neck and potential diagnostic applications. Eur Arch Otorhinolaryngol 271, 211–223 (2014). https://doi.org/10.1007/s00405-013-2400-9

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