Skip to main content
Log in

Diversity and evolution in the zoanthid genus Palythoa (Cnidaria: Hexacorallia) based on nuclear ITS-rDNA

  • Report
  • Published:
Coral Reefs Aims and scope Submit manuscript

Abstract

Previous phylogenetic studies based on mitochondrial DNA markers have suggested that the zoanthid genus Palythoa may consist of both Palythoa species (Palythoa tuberculosa) and species formerly assigned to the genus Protopalythoa (Palythoa mutuki, Palythoa heliodiscus). In the present study various Palythoa spp. samples collected primarily from southern Japan with additional samples from the Indo-Pacific and Caribbean Sea were examined. The nuclear internal transcribed spacer of ribosomal DNA (ITS-rDNA) was sequenced and aligned for phylogenetic analyses to further investigate the relationship between P. tuberculosa, P. mutuki, and P. heliodiscus. ITS-rDNA analyses showed species groups forming monophylies with similar topology but with much higher resolution than seen for mitochondrial phylogenetic analyses. The results also confirmed the very close relationship of P. tuberculosa and P. mutuki. Some specimens appeared to be a potentially undescribed Palythoa species (designated Palythoa sp. sakurajimensis). Additionally, ITS-rDNA sequences of P. mutuki and P. tuberculosa showed additive polymorphic site, demonstrating for the first time a potential history of reticulate evolution in Palythoa.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

References

  • Aguilar JF, Feliner GN (2003) Additive polymorphisms and reticulation in an ITS phylogeny of thrifts (Armeria, Plumbaginaceae). Mol Phylogenet Evol 28:430–447

    Article  Google Scholar 

  • Campbell CS, Wojciechowski MF, Baldwin BG, Alice LA, Donoghue MJ (1997) Persistent nuclear ribosomal DNA sequence polymorphism in the Amelanchier agamic complex (Rosaceae). Mol Biol Evol 14:81–90

    Google Scholar 

  • Diekmann OE, Bak RPM, Stam WT, Olsen JL (2001) Molecular genetic evidence for probably reticulate speciation on the coral genus Madracis from a Caribbean fringing reef slope. Mar Biol 139:221–233

    Article  Google Scholar 

  • Fautin DG (2006) Hexacorallians of the World. http://www.geoportal.kgs.ku.edu/hexacoral/anemone2/index.cfm

  • Feliner GN, Larena BG, Aguilar JF (2004) Fine-scale geographical structure, intra-individual polymorphism and recombination in nuclear ribosomal internal transcribed spacers in Armeria (Plumbaginaceae). Ann Bot 93:189–200

    Article  Google Scholar 

  • Fukami H, Budd AF, Levitan DR, Jara J, Kersanach R, Knowlton N (2004) Geographic differences in species boundaries among members of the Montastraea annularis complex based on molecular and morphological markers. Evolution 58:324–327

    Google Scholar 

  • Gascuel O (1997) BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 14:685–695

    Google Scholar 

  • Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704

    Article  Google Scholar 

  • Hasegawa M, Kishino H, Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22:160–174

    Article  Google Scholar 

  • Hatta M, Fukami H, Wang W, Omori M, Shimoike K, Hayashibara T, Ina Y, Sugiyama T (1999) Reproductive and genetic evidence for a reticulate evolutionary history of mass-spawning corals. Mol Biol Evol 16:1607–1613

    Google Scholar 

  • Hunter CL, Morden CW, Smith CM (1997) The utility of ITS sequences assessing relationships among zooxanthellae and corals. Proc 8th Int Coral Reef Symp 2:1559–1602

    Google Scholar 

  • Levitan DR, Fukami H, Jara J, Kline D, McGovern TM, McGhee KE, Swanson CA, Knowlton N (2004) Mechanisms of reproductive isolation among sympatric broadcast-spawning corals of the Montastraea annularis species complex. Evolution 58:308–323

    Google Scholar 

  • Marquez LM, Miller DJ, MacKenzie JB, van Oppen MJH (2003) Pseudogenes contribute to the extreme diversity of nuclear ribosomal DNA in the hard coral Acropora. Mol Biol Evol 20:1077–1086

    Article  Google Scholar 

  • Medina M, Weil E, Szmant AM (1999) Examination of the Montastraea annularis species complex (Cnidaria: Scleractinia) using ITS and COI sequences. Mar Biotechnol 1:89–97

    Article  Google Scholar 

  • Odorico DM, Miller DJ (1997) Variation among the ribosomal Internal Transcribed Spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): Patterns of variation consistent with reticulate evolution. Mol Biol Evol 14:465–473

    Google Scholar 

  • Ono S, Reimer JD, Tsukahara J (2005) Reproduction of Zoanthus sansibaricus in the infra-littoral zone at Taisho Lava Field, Sakurajima, Kagoshima, Japan. Zool Sci 22:247–255

    Article  Google Scholar 

  • Pax F (1910) Studien an westindischen Actinien. In Spengel JW (ed) Ergebnisse einer Zoologischen Forschungreise nach Westindien von Prof. W. Kukenthal und Dr. R. Hartmeyer im Jahre, 1907. Zoologische Jahrbucher Supplement 11, pp 157–330

  • Penland L, Kloulechad J, Idip D, van Woesik R (2004) Coral spawning in the western Pacific Ocean is related to solar insolation: evidence of multiple spawning events in Palau. Coral Reefs 23:133–140

    Article  Google Scholar 

  • Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics (Oxf) 14:817–818

    Article  Google Scholar 

  • Reimer JD, Ono S, Iwama A, Takishita K, Tsukahara J, Maruyama T (2006a) Morphological and molecular revision of Zoanthus (Anthozoa: Hexacorallia) from southwestern Japan with description of two new species. Zool Sci 23:261–275

    Article  Google Scholar 

  • Reimer JD, Ono S, Iwama A, Tsukahara J, Maruyama T (2006b) High levels of morphological variation despite close genetic relatedness between Zoanthus aff. vietnamensis and Zoanthus kuroshio (Anthozoa: Hexacorallia). Zool Sci 23:755–761

    Article  Google Scholar 

  • Reimer JD, Ono S, Takishita K, Tsukahara J, Maruyama T (2006c) Molecular evidence suggesting species in the zoanthid genera Palythoa and Protopalythoa (Anthozoa: Hexacorallia) are congeneric. Zool Sci 23:87–94

    Article  Google Scholar 

  • Reimer JD, Takishita K, Ono S, Tsukahara J, Maruyama T (2007) Molecular evidence suggesting intraspecific hybridization in Zoanthus (Anthozoa: Hexacorallia). Zool Sci 24 (in press)

  • Rodriguez F, Oliver JL, Marin A, Medina JR (1990) The general stochiatic model of nucleotide substitution. J Theor Biol 142:485–501

    Google Scholar 

  • Ronquist F, Huelsenbeck JP (2003) Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxf) 19:1572–1574

    Article  Google Scholar 

  • Ryland JS, Lancaster JE (2003) Revision of methods of separating species of Protopalythoa (Hexacorallia: Zoanthidea) in the tropical West Pacific. Invert Systemat 17:407–428

    Article  Google Scholar 

  • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    Google Scholar 

  • Sang T, Crawford DJ, Stuessy TF (1995) Documentation of reticulate evolution in peonies (Paeonia) using internal transcribed spacer sequences of nuclear ribosomal DNA: implications for biogeography and concerted evolution. Proc Natl Acad Sci USA 92:6813–6817

    Article  Google Scholar 

  • Shearer TL, van Oppen MJH, Romano SL, Worheide G (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol Ecol 11:2475–2487

    Article  Google Scholar 

  • Sinniger F, Montoya-Burgess JI, Chevaldonne P, Pawlowski J (2005) Phylogeny of the order Zoantharia (Anthozoa, Hexacorallia) based on mitochondrial ribosomal genes. Mar Biol 147:1121–1128

    Article  Google Scholar 

  • Swofford DL (1998) PAUP*. V Phylogenetic analysis using parsimony (*and other methods), version 4. Sinauer Associates, Sunderland

  • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10:512–526

    Google Scholar 

  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882

    Article  Google Scholar 

  • van Oppen MJH, Willis BL, Van Vugt HWJA, Miller DJ (2000) Examination of species boundaries in the Acropora cervicornis group (Scleractinia, Cnidaria) using nuclear DNA sequence analyses. Mol Ecol 9:1363–1373

    Article  Google Scholar 

  • van Oppen MJH, Willis BL, Rheede TV, Miller DJ (2002) Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Mol Ecol 11:1363–1376

    Article  Google Scholar 

  • Veron JEN (1995) Corals of the world: the biogeography and evolution of the Scleractinia. University of New South Wales Press, Sydney

    Google Scholar 

  • Whittall J, Liston A, Gisler S, Meinke RJ (2000) Detecting nucleotide additivity from direct sequences is a SNAP: an example from Sidalcea (Malvaceae). Plant Biol 2:1–7

    Article  Google Scholar 

Download references

Acknowledgments

The authors wish to thank the following people for their support and help throughout the course of this study. Dr. Junzo Tsukahara (Kagoshima University) for his continuing support of zoanthid research; John Byron, Ryan Cox, Dr. Yasuo Furushima (JAMSTEC), Shin Hisashi, Yuichi Nagata, Hideo Noda, Denny Probizanski, Mika Reimer, Kei Sasahara, and Yuki Wada for their help in collecting samples in Japan; Dr. Hironobu Fukami (Kyoto University) for his advice on the nature of the ITS-rDNA region; Omer Polak (Interuniversity for Marine Science, Eilat, Israel) for kindly providing samples from Eilat; Frederic Sinniger (University of Geneva) for productive discussions, comments on this article, and samples from Honduras and Madagascar; and Masoru Kawato and Hirokazu Kuwahara for help with sequencing at JAMSTEC. JDR was supported at JAMSTEC by a Japan Society for the Promotion of Science Post-doctoral fellowship (#P04868). Dr. Dhugal Lindsay (JAMSTEC) helped with English editing. Fumihito Iwase (BIK) gave us invaluable advice on scientific nomenclature. Three anonymous reviewers greatly improved the quality of this manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to J. D. Reimer.

Additional information

Communicated by Biology Editor M. van Oppen.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Reimer, J.D., Takishita, K., Ono, S. et al. Diversity and evolution in the zoanthid genus Palythoa (Cnidaria: Hexacorallia) based on nuclear ITS-rDNA. Coral Reefs 26, 399–410 (2007). https://doi.org/10.1007/s00338-007-0210-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00338-007-0210-5

Keywords

Navigation