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A Line 1 insertion in the Factor IX gene segregates with mild hemophilia B in dogs

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Abstract

We undertook the biochemical and molecular characterization of hemophilia in a large pedigree of German wirehaired pointers. Males affected with hemophilia B had approximately 5% normal Factor IX coagulant activity and a proportional reduction of Factor IX protein concentration, indicative of a mild hemophilia B phenotype. Using Southern blot analyses and PCR amplification of genomic DNA, we discovered a large, 1.5-kb insertion in intron 5 of the Factor IX gene of an affected male. The insert consists of a 5′ truncated canine Line-1 followed by an approximately 200-bp 3′ poly (A) tract, flanked by a 15-bp direct repeat. The insert can be traced through at least five generations and segregates with the hemophilia B phenotype in this breed. This is the first description of a Factor IX mutation associated with mild hemophilia B in a non-human species and provides evidence for a recent Line-1 insertion event in the canine genome.

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References

  1. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang et al. (1997) ArticleTitleGapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 3389–3402 Occurrence Handle9254694

    PubMed  Google Scholar 

  2. S Bentolila JM Bach JL Kessler I Bordelais C Cruaud et al. (1999) ArticleTitleAnalysis of major repetitive DNA sequences in the dog (Canis familiaris) genome. Mamm Genome 10 699–705 Occurrence Handle1:CAS:528:DyaK1MXkt1Olurk%3D Occurrence Handle10384043

    CAS  PubMed  Google Scholar 

  3. MB Brooks (1999) ArticleTitleA review of canine inherited bleeding disorders: biochemical and molecular strategies for disease characterization and carrier detection. J Hered 90 112–118 Occurrence Handle10.1093/jhered/90.1.112 Occurrence Handle1:CAS:528:DyaK1MXhtFylsLY%3D Occurrence Handle9987916

    Article  CAS  PubMed  Google Scholar 

  4. MB Brooks W Gu K Ray (1997) ArticleTitleComplete deletion of factor IX gene and inhibition of factor IX activity in a labrador retriever with hemophilia B. J Am Vet Med Assoc 211 1418–1421 Occurrence Handle1:CAS:528:DyaK2sXnvFagsbg%3D Occurrence Handle9394892

    CAS  PubMed  Google Scholar 

  5. GG Brownlee (1987) ArticleTitleThe molecular pathology of haemophilia B. Fourth Wellcome Trust lecture. Biochem Soc Trans 15 1–8 Occurrence Handle1:CAS:528:DyaL2sXhtFOgt7w%3D Occurrence Handle3556729

    CAS  PubMed  Google Scholar 

  6. FH Burton DD Loeb CF Voliva SL Martin MH Edgell et al. (1986) ArticleTitleConservation throughout mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one. J Mol Biol 187 291–304 Occurrence Handle1:CAS:528:DyaL28XhtVentbc%3D Occurrence Handle3009828

    CAS  PubMed  Google Scholar 

  7. B Burwinkel MW Kilimann (1998) ArticleTitleUnequal homologous recombination between LINE-1 elements as a mutational mechanism in human genetic disease. J Mol Biol 277 513–517 Occurrence Handle10.1006/jmbi.1998.1641 Occurrence Handle1:CAS:528:DyaK1cXjtFKgsLs%3D Occurrence Handle9533876

    Article  CAS  PubMed  Google Scholar 

  8. WJ Dodds (1982) ArticleTitleDetection of genetic defects by screening programs. Am Kennel Gaz 99 56–60

    Google Scholar 

  9. T Eickbush (1999) ArticleTitleExon shuffling in retrospect. Science 283 1465–1467 Occurrence Handle10.1126/science.283.5407.1465 Occurrence Handle1:CAS:528:DC%2BD3cXivFCjs78%3D Occurrence Handle10206876

    Article  CAS  PubMed  Google Scholar 

  10. JP Evans KM Brinkhous GD Brayer HM Reisner KA High (1989) ArticleTitleCanine hemophilia B resulting from a point mutation with unusual consequences. Proc Natl Acad Sci USA 86 10095–10099 Occurrence Handle1:CAS:528:DyaK3cXkvFyktQ%3D%3D Occurrence Handle2481310

    CAS  PubMed  Google Scholar 

  11. JM Fogh IT Fogh (1988) ArticleTitleInherited coagulation disorders. Vet Clin N Am 18 231–243 Occurrence Handle1:STN:280:BieC1M7jtVM%3D

    CAS  Google Scholar 

  12. B Furie B Furie (1990) ArticleTitleMolecular basis of hemophilia. Semin Hematol 27 270–285 Occurrence Handle1:CAS:528:DyaK3MXktVGqtLo%3D Occurrence Handle2115693

    CAS  PubMed  Google Scholar 

  13. F Gianelli T Anagnostopoulos PM Green (1999) ArticleTitleMutation rates in humans. II. Sporadic mutation-specific rates and rate of detrimental human mutations inferred from hemophilia B. Am J Hum Genet 65 1580–1587 Occurrence Handle10.1086/302652 Occurrence Handle10577911

    Article  PubMed  Google Scholar 

  14. F Giannelli PM Green SS Sommer M Poon M Ludwig et al. (1998) ArticleTitleHaemophilia B: database of point mutations and short additions and deletions—eighth ed. Nucleic Acids Res 26 265–268 Occurrence Handle10.1093/nar/26.1.265 Occurrence Handle1:CAS:528:DyaK1cXovVeitg%3D%3D Occurrence Handle9399849

    Article  CAS  PubMed  Google Scholar 

  15. W Gu M Brooks J Catalfamo J Ray K Ray (1999) ArticleTitleTwo distinct mutations cause severe hemophilia B in two unrelated canine pedigrees. Thromb Haemostasis 82 1270–1275 Occurrence Handle1:CAS:528:DyaK1MXmsFansL4%3D

    CAS  Google Scholar 

  16. WK Gu K Ray (1997) ArticleTitleA polymorphic (TTTA)n tandem repeat in an intron of the canine factor IX gene. Anim Genet 23 370–383

    Google Scholar 

  17. J Jurka P Klonowski (1996) ArticleTitleIntegration of retroposable elements in mammals: selection of target sites. J Mol Evol 43 685–689 Occurrence Handle1:CAS:528:DyaK2sXislOruw%3D%3D Occurrence Handle8995066

    CAS  PubMed  Google Scholar 

  18. N Katzir E Arman D Cohen D Givol G Rechavi (1987) ArticleTitleCommon origin of transmissible venereal tumors (TVT) in dogs. Oncogene 1 445–448 Occurrence Handle1:CAS:528:DyaL1cXovVOrtQ%3D%3D Occurrence Handle3330787

    CAS  PubMed  Google Scholar 

  19. E Kawaski (1990) Sample preparation from blood, cells, and other fluids. MA Kawaski DH Innis JJ Gelfand TJ Sninsky (Eds) PCR Protocols: A Guide to Methods and Applications. Academic Press, Harcourt Brace Jovanovich San Diego 146–152

    Google Scholar 

  20. HH Kazazian Jr (2000) ArticleTitleGenetics. L1 retrotransposons shape the mammalian genome. Science 289 1152–1153 Occurrence Handle10.1126/science.289.5482.1152 Occurrence Handle1:CAS:528:DC%2BD3cXmt1Wjurk%3D Occurrence Handle10970230

    Article  CAS  PubMed  Google Scholar 

  21. HH Kazazian Jr C Wong H Youssoufian AF Scott DG Phillips et al. (1988) ArticleTitleHaemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332 164–166 Occurrence Handle1:CAS:528:DyaL1cXhvVWhu7s%3D Occurrence Handle2831458

    CAS  PubMed  Google Scholar 

  22. KE Knobe RCR Ljung (1999) ArticleTitleHaemophilia B carrier detection by factor IX:C analysis; no impact of the type of mutation or severity of disorder. Haemophilia 5 238–242 Occurrence Handle10.1046/j.1365-2516.1999.00331.x Occurrence Handle1:STN:280:DyaK1MzpvVyrsQ%3D%3D Occurrence Handle10469176

    Article  CAS  PubMed  Google Scholar 

  23. O Knobloch B Zoll K Zerres HH Brackmann K Olek et al. (1993) ArticleTitleRecurrent mutations in the factor IX gene: founder effect or repeat de novo events. Investigation of the German haemophilia B population and review of de novo mutations. Hum Genet 92 40–48 Occurrence Handle1:CAS:528:DyaK2cXhtlWiu7k%3D Occurrence Handle8365725

    CAS  PubMed  Google Scholar 

  24. R Ljung P Petrini L Tengborn E Sjorin (2001) ArticleTitleHaemophilia B mutations in Sweden: a population-based study of mutational heterogeneity. Br J Haematol 113 81–86 Occurrence Handle10.1046/j.1365-2141.2001.02759.x Occurrence Handle1:CAS:528:DC%2BD3MXkt1Sjs70%3D Occurrence Handle11328285

    Article  CAS  PubMed  Google Scholar 

  25. AE Mauser J Whitlark KM Whitney CD Lothrop Jr (1996) ArticleTitleA deletion mutation causes hemophilia B in Lhasa Apso dogs. Blood 88 3451–3455 Occurrence Handle1:CAS:528:DyaK28XmsFKrsbg%3D Occurrence Handle8896410

    CAS  PubMed  Google Scholar 

  26. C Mulhardt M Fischer P Gass D Simon-Chazottes JL Guenet et al. (1994) ArticleTitleThe spastic mouse: aberrant splicing of glycine receptor beta subunit mRNA caused by intronic insertion of L1 element. Neuron 13 1003–1015 Occurrence Handle1:STN:280:ByqD3szhvFw%3D Occurrence Handle7946325

    CAS  PubMed  Google Scholar 

  27. EM Ostertag HH Kazazian Jr (2001) ArticleTitleTwin priming: a proposed mechanism for the creation of inversions in L1 retrotransposition. Genome Res 11 2059–2065 Occurrence Handle10.1101/gr.205701 Occurrence Handle1:CAS:528:DC%2BD3MXovFOgtL4%3D Occurrence Handle11731496

    Article  CAS  PubMed  Google Scholar 

  28. I Ovchinnikov AB Troxel GD Swergold (2001) ArticleTitleGenomic characterization of recent human LINE-1 insertions: evidence supporting random insertion. Genome Res 11 2050–2058 Occurrence Handle10.1101/gr.194701 Occurrence Handle1:CAS:528:DC%2BD3MXovFOgt7c%3D Occurrence Handle11731495

    Article  CAS  PubMed  Google Scholar 

  29. J Sambrook EF Fritsch T Maniatis (1989) Analysis and cloning of eukaryotic genomic DNA. Molecular Cloning, A Laboratory Manual Cold Spring Harbor Laboratory Press Cold Spring Harbor, New York 9.17–9.19

    Google Scholar 

  30. Y Sugahara J Catalfamo M Brooks E Hitomi S Bajaj et al. (1996) ArticleTitleIsolation and characterization of canine factor IX: plasma concentration and implications for gene therapy studies. Thromb Haemostasis 75 450–455 Occurrence Handle1:CAS:528:DyaK28XhvV2nsr4%3D

    CAS  Google Scholar 

  31. M Tartary D Vidaud Y Piao JM Costa BR Bahnak et al. (1993) ArticleTitleDetection of a molecular defect in 40 of 44 patients with haemophilia B by PCR and denaturing gradient gel electrophoresis. Br J Haematol 84 662–669 Occurrence Handle1:CAS:528:DyaK2cXitV2mu70%3D Occurrence Handle8217825

    CAS  PubMed  Google Scholar 

  32. AR Thompson (1991) Molecular biology of the hemophilias. BS Thompson (Eds) Progress in Hemostasis and Thrombosis. W.B. Saunders Philadelphia 175–214

    Google Scholar 

  33. P Woods-Samuels C Wong SL Mathias AF Scott HH Kazazian Jr et al. (1989) ArticleTitleCharacterization of a nondeleterious L1 insertion in an intron of the human factor VIII gene and further evidence of open reading frames in functional L1 elements. Genomics 4 290–296 Occurrence Handle1:CAS:528:DyaL1MXktVWrtLc%3D Occurrence Handle2497061

    CAS  PubMed  Google Scholar 

  34. I Yajima S Sato T Kimura K Yasumoto S Shibahara et al. (1999) ArticleTitleAn L1 element intronic insertion in the black-eyed white (Mitfmi-bw) gene: the loss of a single Mitf isoform responsible for the pigmentary defect and inner ear deafness. Hum Mol Genet 8 1431–1441 Occurrence Handle10.1093/hmg/8.8.1431 Occurrence Handle1:CAS:528:DyaK1MXltFagtL0%3D Occurrence Handle10400990

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

Supported in part by the Verein Deutsche Drahthaar-Group North America and The Morris Animal Foundation. The authors thank Jacqueline Fremont and Lisa Spagnoletti for technical support and the referral veterinarians and owners of German wirehaired pointers who participated in the study.

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Correspondence to Marjory B. Brooks.

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Brooks, M.B., Gu, W., Barnas, J.L. et al. A Line 1 insertion in the Factor IX gene segregates with mild hemophilia B in dogs . Mamm Genome 14, 788–795 (2003). https://doi.org/10.1007/s00335-003-2290-z

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  • DOI: https://doi.org/10.1007/s00335-003-2290-z

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