Skip to main content

Advertisement

Log in

Differentiation between pilocytic astrocytoma and glioblastoma: a decision tree model using contrast-enhanced magnetic resonance imaging-derived quantitative radiomic features

  • Oncology
  • Published:
European Radiology Aims and scope Submit manuscript

Abstract

Objective

To differentiate brain pilocytic astrocytoma (PA) from glioblastoma (GBM) using contrast-enhanced magnetic resonance imaging (MRI) quantitative radiomic features by a decision tree model.

Methods

Sixty-six patients from two centres (PA, n = 31; GBM, n = 35) were randomly divided into training and validation data sets (about 2:1). Quantitative radiomic features of the tumours were extracted from contrast-enhanced MR images. A subset of features was selected by feature stability and Boruta algorithm. The selected features were used to build a decision tree model. Predictive accuracy, sensitivity and specificity were used to assess model performance. The classification outcome of the model was combined with tumour location, age and gender features, and multivariable logistic regression analysis and permutation test using the entire data set were performed to further evaluate the decision tree model.

Results

A total of 271 radiomic features were successfully extracted for each tumour. Twelve features were selected as input variables to build the decision tree model. Two features S(1, -1) Entropy and S(2, -2) SumAverg were finally included in the model. The model showed an accuracy, sensitivity and specificity of 0.87, 0.90 and 0.83 for the training data set and 0.86, 0.80 and 0.91 for the validation data set. The classification outcome of the model related to the actual tumour types and did not rely on the other three features (p < 0.001).

Conclusions

A decision tree model with two features derived from the contrast-enhanced MR images performed well in differentiating PA from GBM.

Key Points

MRI findings of PA and GBM are sometimes very similar.

Radiomics provides much more quantitative information about tumours.

Radiomic features can help to distinguish PA from GBM.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5

Similar content being viewed by others

Abbreviations

CI:

Confidence interval

CNS:

Central nervous system

CP:

Complexity parameter

GBM:

Glioblastoma

ICC:

Intraclass correlation coefficient

MRI:

Magnetic resonance imaging

PA:

Pilocytic astrocytoma

ROI:

Regions of interest

SD:

Standard deviation

References

  1. Gaudino S, Martucci M, Russo R et al (2017) MR imaging of brain pilocytic astrocytoma: beyond the stereotype of benign astrocytoma. Childs Nerv Syst 33:35–54

    Article  PubMed  Google Scholar 

  2. Thorne AH, Zanca C, Furnari F (2016) Epidermal growth factor receptor targeting and challenges in glioblastoma. Neuro Oncol 18:914–918

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Alifieris C, Trafalis DT (2015) Glioblastoma multiforme: pathogenesis and treatment. Pharmacol Ther 152:63–82

    Article  CAS  PubMed  Google Scholar 

  4. Alford R, Gargan L, Bowers DC, Klesse LJ, Weprin B, Koral K (2016) Postoperative surveillance of pediatric cerebellar pilocytic astrocytoma. J Neurooncol 130:149–154

    Article  PubMed  Google Scholar 

  5. Cykowski MD, Allen RA, Kanaly AC et al (2013) The differential diagnosis of pilocytic astrocytoma with atypical features and malignant glioma: an analysis of 16 cases with emphasis on distinguishing molecular features. J Neurooncol 115:477–486

    Article  CAS  PubMed  Google Scholar 

  6. Gillies RJ, Kinahan PE, Hricak H (2016) Radiomics: images are more than pictures, they are data. Radiology 278:563–577

    Article  PubMed  Google Scholar 

  7. Yip SS, Aerts HJ (2016) Applications and limitations of radiomics. Phys Med Biol 61:R150–R166

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Rau CS, Wu SC, Chien PC et al (2018) Identification of pancreatic injury in patients with elevated amylase or lipase level using a decision tree classifier: a cross-sectional retrospective analysis in a level I trauma center. Int J Environ Res Public Health. https://doi.org/10.3390/ijerph15020277

  9. El Hentour K, Millet I, Pages-Bouic E, Curros-Doyon F, Molinari N, Taourel P (2018) How to differentiate acute pelvic inflammatory disease from acute appendicitis ? A decision tree based on CT findings. Eur Radiol 28:673–682

    Article  PubMed  Google Scholar 

  10. Zimmerman RK, Balasubramani GK, Nowalk MP et al (2016) Classification and regression tree (CART) analysis to predict influenza in primary care patients. BMC Infect Dis 16:503

    Article  PubMed  PubMed Central  Google Scholar 

  11. Strzelecki M, Szczypinski P, Materka A, Klepaczko A (2013) A software tool for automatic classification and segmentation of 2D/3D medical images. Nucl Instrum Methods Phys Res 702:137–140

    Article  CAS  Google Scholar 

  12. Szczypiński PM, Strzelecki M, Materka A, Klepaczko A (2009) MaZda–a software package for image texture analysis. Comput Methods Programs Biomed 94:66–76

    Article  PubMed  Google Scholar 

  13. Szczypiński PM, Strzelecki M, Materka A (2007) MaZda–a software for texture analysis. Proc of ISITC, Republic of Korea, p 245–249

  14. Baessler B, Mannil M, Oebel S, Maintz D, Alkadhi H, Manka R (2018) Subacute and chronic left ventricular myocardial scar: accuracy of texture analysis on nonenhanced cine MR images. Radiology 286:103–112

    Article  PubMed  Google Scholar 

  15. Yuan M, Zhang YD, Pu XH et al (2017) Comparison of a radiomic biomarker with volumetric analysis for decoding tumour phenotypes of lung adenocarcinoma with different disease-specific survival. Eur Radiol 27:4857–4865

  16. Kursa MB, Rudnicki WR (2010) Feature selection with the Boruta package. J Stat Softw 36:1–13

    Article  Google Scholar 

  17. Khalkhali HR, Lotfnezhad Afshar H, Esnaashari O, Jabbari N (2016) Applying data mining techniques to extract hidden patterns about breast cancer survival in an Iranian cohort study. J Res Health Sci 16:31–35

    PubMed  Google Scholar 

  18. Tempany CM, Zou KH, Silverman SG, Brown DL, Kurtz AB, McNeil BJ (2000) Staging of advanced ovarian cancer: comparison of imaging modalities–report from the Radiological Diagnostic Oncology Group. Radiology 215:761–767

    Article  CAS  PubMed  Google Scholar 

  19. Collins VP, Jones DT, Giannini C (2015) Pilocytic astrocytoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:775–788

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  20. Sato K, Rorke LB (1989) Vascular bundles and wickerworks in childhood brain tumors. Pediatr Neurosci 15:105–110

    Article  CAS  PubMed  Google Scholar 

  21. Smirniotopoulos JG, Murphy FM, Rushing EJ, Rees JH, Schroeder JW (2007) Patterns of contrast enhancement in the brain and meninges. Radiographics 27:525–551

    Article  PubMed  Google Scholar 

  22. Aldape K, Zadeh G, Mansouri S, Reifenberger G, von Deimling A (2015) Glioblastoma: pathology, molecular mechanisms and markers. Acta Neuropathol 129:829–848

    Article  CAS  PubMed  Google Scholar 

  23. Crespo I, Vital AL, Gonzalez-Tablas M et al (2015) Molecular and genomic alterations in glioblastoma multiforme. Am J Pathol 185:1820–1833

    Article  CAS  PubMed  Google Scholar 

  24. Wirsching HG, Galanis E, Weller M (2016) Glioblastoma. Handb Clin Neurol 134:381–397

    Article  PubMed  Google Scholar 

  25. Johnson DR, Brown PD, Galanis E, Hammack JE (2012) Pilocytic astrocytoma survival in adults: analysis of the Surveillance, Epidemiology, and End Results Program of the National Cancer Institute. J Neurooncol 108:187–193

    Article  PubMed  Google Scholar 

  26. Cyrine S, Sonia Z, Mounir T et al (2013) Pilocytic astrocytoma: a retrospective study of 32 cases. Clin Neurol Neurosurg 115:1220–1225

  27. Murray RD, Penar PL, Filippi CG, Tarasiewicz I (2011) Radiographically distinct variant of pilocytic astrocytoma: a case series. J Comput Assist Tomogr 35:495–497

    Article  PubMed  Google Scholar 

  28. Zhou M, Scott J, Chaudhury B et al (2018) Radiomics in brain tumor: image assessment, quantitative feature descriptors, and machine-learning approaches. AJNR Am J Neuroradiol 39:208–216

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  29. Narang S, Lehrer M, Yang D, Lee J, Rao A (2016) Radiomics in glioblastoma: current status, challenges and potential opportunities. Transl Cancer Res 5:383–397

  30. Avanzo M, Stancanello J, El Naqa I (2017) Beyond imaging: the promise of radiomics. Phys Med 38:122–139

    Article  PubMed  Google Scholar 

  31. Shofty B, Artzi M, Ben Bashat D et al (2018) MRI radiomics analysis of molecular alterations in low-grade gliomas. Int J Comput Assist Radiol Surg 13:563–571

    Article  PubMed  Google Scholar 

  32. Li ZC, Bai H, Sun Q et al (2018) Multiregional radiomics features from multiparametric MRI for prediction of MGMT methylation status in glioblastoma multiforme: a multicentre study. Eur Radiol. https://doi.org/10.1007/s00330-017-5302-1

  33. Zhang Z, Yang J, Ho A et al (2018) A predictive model for distinguishing radiation necrosis from tumour progression after gamma knife radiosurgery based on radiomic features from MR images. Eur Radiol 28:2255–2263

    Article  PubMed  Google Scholar 

  34. Li Y, Liu X, Qian Z et al (2018) Genotype prediction of ATRX mutation in lower-grade gliomas using an MRI radiomics signature. Eur Radiol 28:2960–2968

    Article  PubMed  Google Scholar 

  35. Zhang X, Tian Q, Wang L et al (2018) Radiomics strategy for molecular subtype stratification of lower-grade glioma: detecting IDH and TP53 Mutations based on multimodal MRI. J Magn Reson Imaging. https://doi.org/10.1002/jmri.25960

  36. Prasanna P, Tiwari P, Madabhushi A (2014) Co-occurrence of local anisotropic gradient orientations (CoLIAGe): distinguishing tumor confounders and molecular subtypes on MRI. Med Image Comput Comput Assist Interv 17:73–80

    PubMed  Google Scholar 

Download references

Funding

This study has received funding by the medicine and health scientific and technological program of Zhejiang province, China (2016KYA104 and 2017KY374)

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Qian Li or Minming Zhang.

Ethics declarations

Guarantor

The scientific guarantor of this publication is Minming Zhang.

Conflict of interest

The authors of this manuscript declare no relationships with any companies whose products or services may be related to the subject matter of the article.

Statistics and biometry

One of the authors has significant statistical expertise.

Informed consent

Written informed consent was not required for this study because this is a retrospective study on the images.

Ethical approval

Institutional review board approval was obtained.

Methodology

• retrospective

• diagnostic or prognostic study

• multicentre study

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Dong, F., Li, Q., Xu, D. et al. Differentiation between pilocytic astrocytoma and glioblastoma: a decision tree model using contrast-enhanced magnetic resonance imaging-derived quantitative radiomic features. Eur Radiol 29, 3968–3975 (2019). https://doi.org/10.1007/s00330-018-5706-6

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00330-018-5706-6

Keywords

Navigation