Abstract
A cDNA clone (designated CaIRL) encoding an isoflavone reductase-like protein from coffee (Coffea arabica) was retrieved during a search for genes showing organ/tissue-specific expression among the expressed sequence tags (EST) of the Brazilian coffee EST database. The CaIRL cDNA contains a single open reading frame of 946 nucleotides (nt) encoding 314 amino acids (predicted molecular weight of 34 kDa). Several features identified the predicted CaIRL protein as a new member of the PIP family of NADPH-dependent reductases. Expression studies demonstrated that CaIRL is expressed exclusively in coffee leaves and its transcript level is markedly increased in response to fungal infection and mechanical injury. Analysis of transgenic tobacco plants harboring a CaIRL 5′-flanking region (862 nt) fused to uidA reporter gene (GUS) confirmed the responsiveness of the putative promoter to abiotic stress in wounded leaves. In turn, a 5′ deletion to −404 completely abolished promoter activation by abiotic stimulus in transgenic plants. The lack of GUS expression in non-wounded leaf tissues in transgenic tobacco was in contrast to the basal level of CaIRL expression observed in non-stressed healthy coffee leaves.
Similar content being viewed by others
References
Akashi T, Koshimizu S, Aoki T, Ayabe S (2006) Identification of cDNAs encoding pterocarpan reductase involved in isoflavan phytoalexin biosynthesis in Lotus japonicus by EST mining. FEBS Lett 580:5666–5670
Dixon RA (2001) Natural products and plant disease resistance. Nature 411:843–847
Dong J, Chen C, Chen Z (2003) Expression profiles of the ArabidopsisWRKY gene superfamily during plant defense response. Plant Mol Biol 51:21–37
Eulgem T, Rushton PJ, Schmelzer E, Hahlbrock K, Somssich IE (1999) Early nuclear events in plant defence signalling: rapid gene activation by WRKY transcription factors. EMBO J 18:4689–4699
Ganesh D, Petitot AS, Silva MC, Alary R, Lecouls AC, Fernandez D (2006) Monitoring of the early molecular resistance responses of coffee (Coffea arabica L.) to the rust fungus (Hemileia vastatrix) using real-time quantitative RT–PCR. Plant Sci 170:1045–1051
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biol 52:696–704
Hibi N, Higashiguchi S, Hashimoto T, Yamada Y (1994) Gene expression in tobacco low-nicotine mutants. Plant Cell 6:723–735
Higo K, Ugawa Y, Iwamoto M, Korenaga T (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res 27:297–300
Horsch RB, Fry JE, Hoffmann NL, Eichholtz D, Rogers SG, Fraley RT (1985) A simple and general method for transferring genes into plants. Science 227:1229–1231
Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R (2007) Dendroscope—an interactive viewer for large phylogenetic trees. BMC Bioinformatics 8:460
Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901–3907
Kajikawa M, Hirai N, Hashimoto T (2009) A PIP-family protein is required for biosynthesis of tobacco alkaloids. Plant Mol Biol 69:287–298
Kim ST, Cho KS, Kim SG, Kang SY, Kang KY (2003a) A rice isoflavone reductase-like gene, OsIRL, is induced by rice blast fungal elicitor. Mol Cells 16:224–231
Kim ST, Cho KS, Yu S, Kim SG, Hong JC, Han CD, Bae DW, Nam MH, Kang KY (2003b) Proteomic analysis of differentially expressed proteins induced by rice blast fungus and elicitor in suspension-cultured rice cells. Proteomics 3:2368–2378
Lers A, Burd S, Lomaniec E, Droby S, Chalutz E (1998) The expression of a grapefruit gene encoding an isoflavone reductase-like protein is induced in response to UV irradiation. Plant Mol Biol 36:847–856
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P, Rombauts S (2002) PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325–327
Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−∆∆Ct method. Methods 25:402–408
Louie GV, Baiga TJ, Bowman ME, Koeduka T, Taylor JH, Spassova SM, Pichersky E, Noel JP (2007) Structure and reaction mechanism of basil eugenol synthase. PLoS ONE 2:e993
Luo HL, Song FM, Goodman RM, Zheng Z (2005) Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses. Plant Biol 7:459–468
Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL, Dietrich RA (2000) The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nat Genet 26:403–410
Oommen A, Dixon RA, Paiva NL (1994) The elicitor-inducible alfalfa isoflavone reductase promoter confers different patterns of developmental expression in homologous and heterologous transgenic plants. Plant Cell 6:1789–1803
Palm CJ, Costa MA, An G, Ryan CA (1990) Wound-inducible nuclear protein binds DNA fragments that regulate a proteinase inhibitor II gene from potato. Proc Natl Acad Sci USA 87:603–607
Park HC, Kim ML, Kang YH, Jeon JM, Yoo JH, Kim MC, Park CY, Jeong JC, Moon BC, Lee JH, Yoon HW, Lee SH, Chung WS, Lim CO, Lee SY, Hong JC, Cho MJ (2004) Pathogen- and NaCl-induced expression of the SCaM-4 promoter is mediated in part by a GT-1 box that interacts with a GT-1-like transcription factor. Plant Physiol 135:2150–2161
Petrucco S, Bolchi A, Foroni C, Percudani R, Rossi GL, Ottonello S (1996) A maize gene encoding an NADPH binding enzyme highly homologous to isoflavone reductases is activated in response to sulfur starvation. Plant Cell 8:69–80
Ramakers C, Ruijter JM, Deprez RH, Moorman AF (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 339:62–66
Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574
Salekdeh GH, Siopongco J, Wade LJ, Ghareyazie B, Bennett J (2002) Proteomic analysis of rice leaves during drought stress and recovery. Proteomics 2:1131–1145
Schwartz AS, Pachter L (2007) Multiple alignment by sequence annealing. Bioinformatics 23:e24–e29
Shoji T, Winz R, Iwase T, Nakajima K, Yamada Y, Hashimoto T (2002) Expression patterns of two tobacco isoflavone reductase-like genes and their possible roles in secondary metabolism in tobacco. Plant Mol Biol 50:427–440
van Eldik GJ, Ruiter RK, Colla PH, van Herpen MM, Schrauwen JA, Wullems GJ (1997) Expression of an isoflavone reductase-like gene by pollen tube growth in pistils of Solanum tuberosum. Plant Mol Biol 33:923–929
Vieira LGE et al (2006) Brazilian coffee genome project: an EST-based genomic resource. Brazilian J Plant Physiol 18:95–108
Villain P, Mache R, Zhou DX (1996) The mechanism of GT element-mediated cell type-specific transcriptional control. J Biol Chem 271:32593–32598
Acknowledgments
This work was supported by a grant from “Consórcio Brasileiro de Pesquisa e Desenvolvimento do Café (CBP&D-Café)”. We would like to thank Antônio S. K. Braz for his help with the phylogenetic analyses. M.B. and F.E.S. were recipients of fellowships from CAPES, Brazil.
Author information
Authors and Affiliations
Corresponding author
Additional information
Communicated by L. Jouanin.
M. Brandalise and F. E. Severino contributed equally to this work.
The nucleotide sequences data reported in this paper have been assigned with accession numbers FJ972200 and FJ972201.
Rights and permissions
About this article
Cite this article
Brandalise, M., Severino, F.E., Maluf, M.P. et al. The promoter of a gene encoding an isoflavone reductase-like protein in coffee (Coffea arabica) drives a stress-responsive expression in leaves. Plant Cell Rep 28, 1699–1708 (2009). https://doi.org/10.1007/s00299-009-0769-0
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00299-009-0769-0