Skip to main content
Log in

Spirillospora tritici sp. nov., a Novel Actinomycete Isolated from Rhizosphere Soil of Triticum aestivum L.

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

A Gram-positive, aerobic actinomycetes, designated strain SJ 21T, was isolated from the rhizosphere soil of Triticum aestivum L. collected from Langfang, Hebei Province, Central China. Strain SJ 21T with weak antifungal activity also contained genes (involved in antibiotics biosynthesis) of the nonribosomal peptide synthetases (NRPS), ketosynthase (KS) and methyl malonyl transferase domains (PKS-I) as well as KSα and KSβ domains (PKS-II). A polyphasic taxonomic study was carried out to establish the status of strain SJ 21T. The strain formed spherical spore vesicles (7.0–8.9 µm) consisting of coiled and branched chains on aerial mycelia. 16S rRNA gene sequence similarity studies showed that strain SJ 21T belongs to the genus Spirillospora and formed a distinct branch with its closest neighbour Spirillospora albida IFO 12248T (98.7%). The morphological and chemotaxonomic properties of the strain are also consistent with those members of the genus Spirillospora. DNA–DNA hybridization experiments and phenotypic tests were carried out between strain SJ 21T and S. albida, which further clarified their relatedness and demonstrated that SJ 21T could be distinguished genomically from S. albida. Therefore, the strain is considered to represent a novel species of the genus Spirillospora, for which the name Spirillospora tritici sp. nov. is proposed. The type strain is SJ 21T (=CGMCC 4.7420T =JCM 32390T).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  1. Ayuso A, Clark D, González I, Salazar O, Anderson A, Genilloud O (2005) A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and nonribosomal peptide synthetase biosynthetic pathways. Appl Microbiol Biotechnol 67:795–806

    Article  CAS  PubMed  Google Scholar 

  2. Ayuso-Sacido A, Genilloud O (2005) New PCR primers for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution of these biosynthetic gene sequences in major taxonomic groups. Microb Ecol 49:10–24

    Article  CAS  PubMed  Google Scholar 

  3. Berendsen RL, Pieterse CM, Bakker PA (2012) The rhizosphere microbiome and plant health. Trends Plant Sci 17:478–486

    Article  CAS  PubMed  Google Scholar 

  4. Brosius J, Palmer JL, Kennedy JP, Noller HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75:4801–4805

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Bulgarelli D, Schlaeppi K, Spaepen S, ver Loren van Themaat E, Schulze-Lefert P (2013) Structure and functions of the bacterial microbiota of plants. Annu Rev Plant Biol 64:807–838

    Article  CAS  PubMed  Google Scholar 

  6. Collins MD (1985) Isoprenoid quinone analyses in bacterial classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267–287

    Google Scholar 

  7. Couch JN (1963) Some new genera and species of the Actinoplanaceae. J Elisha Mitchell Sci Soc 79:53–70

    Google Scholar 

  8. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12:133–142

    Article  CAS  PubMed  Google Scholar 

  9. Domnas A (1968) Pigments of the Actinoplanaceae. I. Pigment production by Spirillospora 1655. J Elisha Mitchell Sci Soc 84:16–23

    CAS  Google Scholar 

  10. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376

    Article  CAS  PubMed  Google Scholar 

  11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Article  PubMed  Google Scholar 

  12. Gao RX, Liu CX, Zhao JW, Jia FY, Yu C, Yang LY, Wang XJ, Xiang WS (2014) Micromonospora jinlongensis sp. nov., isolated from muddy soil in China and emended description of the genus Micromonospora. Antonie Leeuwenhoek 105:307–315

    Article  CAS  PubMed  Google Scholar 

  13. Goodfellow M, Trujillo ME (2015) Spirillospora. In: Whitman WB (ed) Bergey’s manual of systematics of archaea and bacteria. Wiley, Hoboken, pp 1–7

    Google Scholar 

  14. Gordon RE, Barnett DA, Handerhan JE, Pang C (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24:54–63

    Article  Google Scholar 

  15. Hacène H, Kebir K, Othmane DS, Lefebvre G (1994) HM17, a new polyene antifungal antibiotic produced by a new strain of Spirillospora. J Appl Bacteriol 77:484–489

    Article  PubMed  Google Scholar 

  16. Hayakawa M, Nonomura H (1987) Humic acid-vitamin agar, new medium for the selective isolation of soil actinomycetes. J Ferment Technol 65:501–509

    Article  CAS  Google Scholar 

  17. Huss VA, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4:184–192

    Article  CAS  PubMed  Google Scholar 

  18. Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141–145

    CAS  PubMed  PubMed Central  Google Scholar 

  19. Kelly KL (1964) Inter-society colour council-national bureau of standards colour-name charts illustrated with centroid colors. US Government Printing Office, Washington, DC

    Google Scholar 

  20. Kim KO, Shin KS, Kim MN, Shin KS, Labeda DP, Han JH, Kim SB (2012) Reassessment of the status of Streptomyces setonii and reclassification of Streptomyces fimicarius as a later synonym of Streptomyces setonii and Streptomyces albovinaceus as a later synonym of Streptomyces globisporus based on combined 16S rRNA/gyrB gene sequence analysis. Int J Syst Evol Microbiol 62:2978–2985

    Article  CAS  PubMed  Google Scholar 

  21. Kim SB, Brown R, Oldfield C, Gilbert SC, Iliarionov S, Goodfellow M (2000) Gordonia amicalis sp. nov., a novel dibenzothiophene-desulphurizing actinomycete. Int J Syst Evol Microbiol 50:2031–2036

    Article  CAS  PubMed  Google Scholar 

  22. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120

    Article  CAS  PubMed  Google Scholar 

  23. Kroppenstedt RM, Goodfellow M (2006) The family Thermomonosporaceae: Actinocorallia, Actinomadura, Spirillospora and Thermomonospora. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, vol 3, 3rd edn. Springer, New York, pp 682–724

    Chapter  Google Scholar 

  24. Lechevalier MP, Lechevalier HA (1980) The chemotaxonomy of actinomycetes. In: Dietz A, Thayer DW (eds) Actinobacteria taxonomy special publication, vol 6. Society of Industrial Microbiology, Arlington, pp 227–291

    Google Scholar 

  25. Lipski A, Altendorf K (1995) Actinomadura nitritigenes sp. nov., isolated from experimental biofilters. Int J Syst Bacteriol 45:717–723

    Article  CAS  Google Scholar 

  26. Mandel M, Marmur J (1968) Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12:195–206

    Article  CAS  Google Scholar 

  27. McInnis TM Jr, Domnas A (1970) Pigments of the Actinoplanaceae. 3. A spirillomycin-type pigment from Spirillospora 1309-b. Z Allg Mikrobiol 10:129–136

    Article  CAS  PubMed  Google Scholar 

  28. McKerrow J, Vagg S, McKinney T, Seviour EM, Maszenan AM, Brooks P, Seviour RJ (2000) A simple HPLC method for analysing diaminopimelic acid diastereomers in cell walls of Gram-positive bacteria. Lett Appl Microbiol 30:178–182

    Article  CAS  PubMed  Google Scholar 

  29. Mendes R, Kruijt M, De Bruijn I et al (2011) Deciphering the rhizosphere microbiome for disease-suppressive bacteria. Science 332:1097–1100

    Article  CAS  PubMed  Google Scholar 

  30. Mertz FP, Yao RC (1990) Actinomadura fibrosa sp. nov. isolated from soil. Int J Syst Bacteriol 40:28–33

    Article  CAS  PubMed  Google Scholar 

  31. Minnikin DE, Hutchinson IG, Caldicott AB, Goodfellow M (1980) Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J Chromatogr A 188:221–233

    Article  CAS  Google Scholar 

  32. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal K, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233–241

    Article  CAS  Google Scholar 

  33. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425

    CAS  PubMed  Google Scholar 

  34. Schäfer D (1973) Beitrage zur Klassifzierung und Taxonomic der Actinoplanaceae. PhD dissertation, University of Marburg/Lahn

  35. Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J, Imhoff JF (2010) Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panacea. Appl Environ Microbiol 76:3702–3714

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  36. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340

    Article  Google Scholar 

  37. Smibert RM, Krieg NR (1994) Phenotypic characterisation. In: Gerhardt P, Murray RGE, Wood WA, Krieg NR (eds) Methods for general and molecular bacteriology. American Society for Microbiology, Washington, DC, pp 607–654

    Google Scholar 

  38. Songsumanus A, Kudo T, Ohkuma M, Phongsopitanun W, Tanasupawat S (2016) Actinomadura montaniterrae sp. nov., isolated from mountain soil. Int J Syst Evol Microbiol 66:3310–3316

    Article  CAS  PubMed  Google Scholar 

  39. Stackebrandt E, Rainey FA, Ward-Rainey NL (1997) Proposal for a new hierarchic classification system, Actinobacteria classis nov. Int J Syst Bacteriol 47:479–491

    Article  Google Scholar 

  40. Stackebrandt E, Wunner-Füssl NL, Fowler VJ, Schleifer KH (1981) Deoxyribonucleic acid homologies and ribosomal ribonucleic acid similarities among spore forming members of the order Actinomycetales. Int J Syst Bacteriol 31:420–431

    Article  CAS  Google Scholar 

  41. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.06. Mol Biol Evol 30:2725–2729

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  42. Waksman SA (1961) The Actinomycetes. vol. II. Classification, identification and descriptions of genera and species. Williams and Wilkins, Baltimore

    Google Scholar 

  43. Waksman SA (1967) The Actinomycetes: a summary of current knowledge. Ronald Press, New York

    Google Scholar 

  44. Wayne LG, Brenner DJ, Colwell RR et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464

    Article  Google Scholar 

  45. Wu C, Lu X, Qin M, Wang Y, Ruan J (1989) Analysis of menaquinone compound in microbial cells by HPLC. Microbiology 16:176–178

    CAS  Google Scholar 

  46. Xiang WS, Liu CX, Wang XJ, Du J, Xi LJ, Huang Y (2011) Actinoalloteichus nanshanensis sp. nov., isolated from the rhizosphere of a fig tree (Ficus religiosa). Int J Syst Evol Microbiol 61:1165–1169

    Article  CAS  PubMed  Google Scholar 

  47. Xie QY, Lin HP, Li L, Brown R, Goodfellow M, Deng Z, Hong K (2012) Verrucosispora wenchangensis sp. nov., isolated from mangrove soil. Antonie Leeuwenhoek 102:1–7

    Article  PubMed  Google Scholar 

  48. Yokota A, Tamura T, Hasegawa T, Huang LH (1993) Catenuloplanes japonicas gen. nov., sp. nov., nom. rev., a new genus of the order Actinomycetales. Int J Syst Bacteriol 43:805–812

    Article  Google Scholar 

  49. Zhang Z, Kudo T, Nakajima Y, Wang Y (2001) Clarification of the relationship between the members of the family Thermomonosporaceae on the basis of 16S rDNA, 16S-23S rRNA internal transcribed spacer and 23S rDNA sequences and chemotaxonomic analyses. Int J Syst Evol Microbiol 51:373–383

    Article  CAS  PubMed  Google Scholar 

  50. Zhi XY, Li WJ, Stackebrandt E (2009) An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol 59:589–608

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

This work was supported in part by grants from the National Natural Science Foundation of China (Nos. 31672092 and 31701858). We are grateful to Prof. Aharon Oren for helpful advice on the specific epithet.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Junwei Zhao or Wensheng Xiang.

Ethics declarations

Conflict of interest

The authors declare that they have no conflict of interest.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 3847 KB)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Song, J., Wang, J., Sun, T. et al. Spirillospora tritici sp. nov., a Novel Actinomycete Isolated from Rhizosphere Soil of Triticum aestivum L.. Curr Microbiol 75, 1477–1483 (2018). https://doi.org/10.1007/s00284-018-1548-3

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-018-1548-3

Navigation