Skip to main content
Log in

Transcript Accumulation from the rpoS Gene Encoding a Stationary-Phase Sigma Factor in Pseudomonas chlororaphis Strain O6 Is Regulated by the Polyphosphate Kinase Gene

  • Published:
Current Microbiology Aims and scope Submit manuscript

Abstract

Polyphosphate levels are modulated by the actions of polyphosphate kinase, encoded by ppk, and exopolyphosphatase, encoded by ppx. The genes ppk and ppx are adjacent to each other in the genome of the root colonizer, Pseudomonas chlororaphis O6. A ppk-deficient mutant was more sensitive to oxidative stress than the wild-type and the ppx mutant. Transcripts from ppx increased as cultures matured from mid- to late-logarithmic and stationary phases, whereas abundance was greater for ppk in the late-logarithmic phase than in the stationary phase. Transcript accumulation from the rpoS gene, encoding the stationary-phase sigma factor RpoS, was decreased in the mid- and late-logarithmic and stationary phases in the ppk mutant. Thus, ppk regulates rpoS transcript accumulation in P. chlororaphis O6. However, mutations in either the ppk or ppx genes had no effect on induction of systemic resistance in plants colonized by P. chlororaphis O6.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.
Fig. 2.
Fig. 3.

Similar content being viewed by others

Literature Cited

  1. Akiyama M, Crooke E, Kornberg A (1993) An exopolyphosphatase of Escherichia coli. J Biol Chem 268:633–639

    PubMed  CAS  Google Scholar 

  2. Ault-Riché D, Fraley CD, Tzeng C-M, Kornberg A (1998) Novel assay reveals multiple pathways regulating stress-induced accumulations of inorganic polyphosphate in Escherichia coli. J Bacteriol 180:1841–1847

    PubMed  Google Scholar 

  3. Bertani I, Sevo M, Kojic M, Venturi V (2003) Role of GacA, LasI, RhlI, Ppk, PsrA, Vfr, and ClpXP in the regulation of the stationary-phase sigma factor rpoS/RpoS in Pseudomonas. Arch Microbiol 180:264–271

    Article  PubMed  CAS  Google Scholar 

  4. Elhai J, Wolk CP (1988) A versatile class of positive-selection vectors based on the nonviability of palindrome-containing plasmids that allows cloning into long polylinkers. Gene 68:119–138

    Article  PubMed  CAS  Google Scholar 

  5. Hirsch M, Elliott T (2002) Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli. J Bacteriol 184:5077–5087

    Article  PubMed  CAS  Google Scholar 

  6. Kang BR, Cho BH, Anderson AJ, Kim YC (2004) The global regulator GacS of a biocontrol bacterium Pseudomonas chlororaphis O6 regulates transcription from the rpoS gene encoding a stationary-phase sigma factor and affects survival in oxidative stress. Gene 325:137–143

    Article  PubMed  CAS  Google Scholar 

  7. Kim K-S, Rao NN, Fraley CD, Kornberg A (2002) Inorganic polyphosphate is essential for long-term survival and virulence factors in Shigella and Salmonella spp. Proc Natl Acad Sci USA 99:7675–7680

    Article  PubMed  CAS  Google Scholar 

  8. Kim MS, Kim YC, Cho BH (2004) Gene expression analysis in cucumber leaves primed by root colonization with Pseudomonas chlororaphis O6 on challenge-inoculation with Corynespora cassiicola. Plant Biol 6:105–108

    Article  PubMed  CAS  Google Scholar 

  9. Kim YC, Kim CS, Cho BH, Anderson AJ (2004) Major Fe-superoxide dismutase (FeSOD) activity in Pseudomonas putida is essential for survival under conditions of oxidative stress during microbial challenge and nutrient limitation. J Microbiol Biotechnol 14:859–862

    CAS  Google Scholar 

  10. Kornberg A, Rao NN, Ault-Riche D (1999) Inorganic polyphosphate: A molecule of many functions. Annu Rev Biochem 68:89–125

    Article  PubMed  CAS  Google Scholar 

  11. Miller CD, Kim YC, Anderson AJ (1997) A method to derive a promoter fusion and activate the gene for the stationary-phase inducible catalase (catC) from Pseudomonas putida. J Bacteriol 179:5241–5245

    PubMed  CAS  Google Scholar 

  12. Nam HS, Anderson AJ, Yang KY, Kim YC (2006) The dctA gene of Pseudomonas chlororaphis is under RpoN control and is required for effective root colonization and induction of systemic resistance. FEMS Microbiol Lett 256:98–104

    Article  PubMed  CAS  Google Scholar 

  13. Rashid MH, Rumbaugh K, Passador L, Davies DG, Hamood AN, Iglewski BH, et al. (2000) Polyphosphate kinase is essential for biofilm development, quorum sensing, and virulence of Pseudomonas aeruginosa. Proc Natl Acad Sci USA 97:9636–9641

    Article  PubMed  CAS  Google Scholar 

  14. Sambrook J, Frithsch EF, Maniatis T (1989) Molecular cloning: A laboratory manual, 2nd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press

    Google Scholar 

  15. Sarniguet A, Kraus J, Henkels MD, Muehlchen AM, Loper JE (1995) The sigma factor σs affects antibiotic production and biologic control activity of Pseudomonas fluorescens Pf-5. Proc Natl Acad Sci USA 94:12255–12259

    Article  Google Scholar 

  16. Shiba T, Tsutsumi K, Yano H, Ihara Y, Kameda A, Tanaka K, et al. (1997) Inorganic polyphosphate and the induction of rpoS expression. Proc Natl Acad Sci USA 94:11210–11215

    Article  PubMed  CAS  Google Scholar 

  17. Spencer M, Ryu CM, Yang KY, Kim YC, Kloepper JW, Anderson AJ (2003) Induced defenses in tobacco by Pseudomonas chlororaphis O6 involves the ethylene pathway. Physiol Mol Plant Pathol 67:27–34

    Article  Google Scholar 

  18. Timmusk S, Grantcharova N, Wagner EG (2005) Paenibacillus polymyxa invades plant roots and forms biofilms. Appl Environ Microbiol 71:7293–7300

    Article  Google Scholar 

  19. Timmusk S, Wagner EG (1999) The plant-growth-promoting rhizobacterium Paenibacillus polymyxa induces changes in Arabidopsis thaliana gene expression: A possible connection between biotic and abiotic stress responses. Mol Plant Microbe Interact 12:951–959

    PubMed  CAS  Google Scholar 

  20. Venturi V (2003) Control of rpoS transcription in Escherichia coli and Pseudomonas: Why so different? Mol Microbiol 49:1–9

    Article  PubMed  CAS  Google Scholar 

  21. Walker TS, Bais HP, Deziel E, Schweizer HP, Rahme LG, Decrease R, Vivanco JM (2004) Pseudomonas aeruginosa-plant root interactions. Pathogenicity, biofilm formation, and root exudation. Plant Physiol 134:320–331

    Article  PubMed  CAS  Google Scholar 

  22. Whistler CA, Corbell NA, Sarniguet A, Ream W, Loper JE (1998) The two-component regulators GacS and GacA influence accumulation of the stationary-phase sigma σs and the stress response in Pseudomonas fluorescens Pf-5. J Bacteriol 180:6635–6641

    PubMed  CAS  Google Scholar 

  23. Zdor R, Anderson AJ (1992) Influence of root colonizing pseudomonads on defense mechanisms of bean. Plant Soil 140:99–107

    Article  Google Scholar 

  24. Zhang H, Ishige K, Kornberg A (2002) A polyphosphate kinase (PPK2) widely conserved in bacteria. Proc Natl Acad Sci USA 99:16678–16683

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This work was supported by a grant (Code No. 20050401034716) from the BioGreen 21 program, Rural Development Administration, Republic of Korea, and by a grant from the Technology Development Program for Agriculture and Forestry, Ministry of Agriculture and Forestry, Republic of Korea. This work was also supported by a grant from the Utah Agricultural Experiment Station to A. J. A.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Y. C. Kim.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Kim, H., Yang, K.Y., Cho, B.H. et al. Transcript Accumulation from the rpoS Gene Encoding a Stationary-Phase Sigma Factor in Pseudomonas chlororaphis Strain O6 Is Regulated by the Polyphosphate Kinase Gene. Curr Microbiol 54, 219–223 (2007). https://doi.org/10.1007/s00284-006-0361-6

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00284-006-0361-6

Keywords

Navigation