Abstract
The development of Pichia pastoris as a production platform for recombinant proteins has been a remarkable success story over the last three decades. Stable cheap production processes and the good protein secretion abilities were pacemakers of this development. However, limitations of protein folding, glycosylation or secretion have been identified quite early on. With the availability of genome sequences and the development of systems biology characterization in the last 5 years, remarkable success in strain improvement was achieved. Here, we focus on recent developments of characterization and improvement of P. pastoris production strains regarding protein folding, intracellular trafficking, glycosylation and proteolytic degradation.
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Aalto MK, Ronne H, Keranen S (1993) Yeast syntaxins Sso1p and Sso2p belong to a family of related membrane proteins that function in vesicular transport. Embo J 12:4095–4104
Aebi M (2013) N-linked protein glycosylation in the ER. Biochim Biophys Acta 1833:2430–2437
Ahmad M, Hirz M, Pichler H, Schwab H (2014) Protein expression in Pichia pastoris: recent achievements and perspectives for heterologous protein production. Appl Microbiol Biotechnol 98:5301–5317
Babour A, Beckerich JM, Gaillardin C (2004) Identification of an UDP-Glc: glycoprotein glucosyltransferase in the yeast Yarrowia lipolytica. Yeast 21:11–24
Baumann K, Carnicer M, Dragosits M, Graf AB, Stadlmann J, Jouhten P, Maaheimo H, Gasser B, Albiol J, Mattanovich D, Ferrer P (2010) A multi-level study of recombinant Pichia pastoris in different oxygen conditions. BMC Syst Biol 4:141
Bharucha N, Liu Y, Papanikou E, McMahon C, Esaki M, Jeffrey PD, Hughson FM, Glick BS (2013) Sec16 influences transitional ER sites by regulating rather than organizing COPII. Mol Biol Cell 24:3406–3419
Bowers K, Stevens TH (2005) Protein transport from the late Golgi to the vacuole in the yeast Saccharomyces cerevisiae. Biochim Biophys Acta 1744:438–454
Brodsky JL, Skach WR (2011) Protein folding and quality control in the endoplasmic reticulum: recent lessons from yeast and mammalian cell systems. Curr Opin Cell Biol 23:464–475
Cabral KM, Almeida MS, Valente AP, Almeida FC, Kurtenbach E (2003) Production of the active antifungal Pisum sativum defensin 1 (Psd1) in Pichia pastoris: overcoming the inefficiency of the STE13 protease. Protein Expr Purif 31:115–122
Carnicer M, Pierich AT, Dam JV, Heijnen JJ, Albiol J, Gulik WV, Ferrer P (2012) Quantitative metabolomics analysis of amino acid metabolism in recombinant Pichia pastoris under different oxygen availability conditions. Microb Cell Factories 11:83
Cereghino JL, Cregg JM (2000) Heterologous protein expression in the methylotrophic yeast Pichia pastoris. FEMS Microbiol Rev 24:45–66
Chapman RE, Walter P (1997) Translational attenuation mediated by an mRNA intron. Curr Biol 7:850–859
Choi BK, Warburton S, Lin H, Patel R, Boldogh I, Meehl M, d’Anjou M, Pon L, Stadheim TA, Sethuraman N (2012) Improvement of N-glycan site occupancy of therapeutic glycoproteins produced in Pichia pastoris. Appl Microbiol Biotechnol 95:671–682
Chung BK, Lee DY (2012) Computational codon optimization of synthetic gene for protein expression. BMC Syst Biol 6:134
Conibear E, Stevens TH (1998) Multiple sorting pathways between the late Golgi and the vacuole in yeast. Biochim Biophys Acta 1404:211–230
Cox JS, Walter P (1996) A novel mechanism for regulating activity of a transcription factor that controls the unfolded protein response. Cell 87:391–404
Daly R, Hearn MT (2005) Expression of heterologous proteins in Pichia pastoris: a useful experimental tool in protein engineering and production. J Mol Recognit 18:119–138
Damasceno L, Anderson K, Ritter G, Cregg J, Old L, Batt C (2006) Cooverexpression of chaperones for enhanced secretion of a single-chain antibody fragment in Pichia pastoris. Appl Microbiol Biotechnol 74:381–389
Dean N (1999) Asparagine-linked glycosylation in the yeast Golgi. Biochim Biophys Acta 1426:309–322
Delic M, Mattanovich D, Gasser B (2010) Monitoring intracellular redox conditions in the endoplasmic reticulum of living yeasts. FEMS Microbiol Lett 306:61–66
Delic M, Rebnegger C, Wanka F, Puxbaum V, Haberhauer-Troyer C, Hann S, Köllensperger G, Mattanovich D, Gasser B (2012) Oxidative protein folding and unfolded protein response elicit differing redox regulation in endoplasmic reticulum and cytosol of yeast. Free Radic Biol Med 52:2000–2012
Delic M, Valli M, Graf AB, Pfeffer M, Mattanovich D, Gasser B (2013) The secretory pathway: exploring yeast diversity. FEMS Microbiol Rev 37:872–914
Delic M, Gongrich R, Mattanovich D, Gasser B (2014) Engineering of protein folding and secretion-strategies to overcome bottlenecks for efficient production of recombinant proteins. Antioxid Redox Signal 21:414–437
Dragosits M, Stadlmann J, Albiol J, Baumann K, Maurer M, Gasser B, Sauer M, Altmann F, Ferrer P, Mattanovich D (2009) The effect of temperature on the proteome of recombinant Pichia pastoris. J Proteome Res 8:1380–1392
Dragosits M, Stadlmann J, Graf A, Gasser B, Maurer M, Sauer M, Kreil DP, Altmann F, Mattanovich D (2010) The response to unfolded protein is involved in osmotolerance of Pichia pastoris. BMC Genomics 11:207
Dube S, Fisher JW, Powell JS (1988) Glycosylation at specific sites of erythropoietin is essential for biosynthesis, secretion, and biological function. J Biol Chem 263:17516–17521
Esaki M, Liu Y, Glick BS (2006) The budding yeast Pichia pastoris has a novel Sec23p homolog. FEBS Lett 580:5215–5221
Fernandez FS, Trombetta SE, Hellman U, Parodi AJ (1994) Purification to homogeneity of UDP-glucose: glycoprotein glucosyltransferase from Schizosaccharomyces pombe and apparent absence of the enzyme from Saccharomyces cerevisiae. J Biol Chem 269:30701–30706
Fitzgerald I, Glick BS (2014) Secretion of a foreign protein from budding yeasts is enhanced by cotranslational translocation and by suppression of vacuolar targeting. Microb Cell Factories 13:125
Gagnon-Arsenault I, Tremblay J, Bourbonnais Y (2006) Fungal yapsins and cell wall: a unique family of aspartic peptidases for a distinctive cellular function. FEMS Yeast Res 6:966–978
Gasser B, Maurer M, Gach J, Kunert R, Mattanovich D (2006) Engineering of Pichia pastoris for improved production of antibody fragments. Biotechnol Bioeng 94:353–361
Gasser B, Maurer M, Rautio J, Sauer M, Bhattacharyya A, Saloheimo M, Penttilä M, Mattanovich D (2007a) Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions. BMC Genomics 8:179
Gasser B, Sauer M, Maurer M, Stadlmayr G, Mattanovich D (2007b) Transcriptomics-based identification of novel factors enhancing heterologous protein secretion in yeasts. Appl Environ Microbiol 73:6499–6507
Gasser B, Prielhofer R, Marx H, Maurer M, Nocon J, Steiger M, Puxbaum V, Sauer M, Mattanovich D (2013) Pichia pastoris: protein production host and model organism for biomedical research. Future Microbiol 8:191–208
Gerst JE, Rodgers L, Riggs M, Wigler M (1992) SNC1, a yeast homolog of the synaptic vesicle-associated membrane protein/synaptobrevin gene family: genetic interactions with the RAS and CAP genes. Proc Natl Acad Sci U S A 89:4338–4342
Gong B, Burnina I, Stadheim TA, Li H (2013) Glycosylation characterization of recombinant human erythropoietin produced in glycoengineered Pichia pastoris by mass spectrometry. J Mass Spectrom 48:1308–1317
Gong B, Burnina I, Lynaugh H, Li H (2014) O-linked glycosylation analysis of recombinant human granulocyte colony-stimulating factor produced in glycoengineered Pichia pastoris by liquid chromatography and mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci 945–946:135–140
Govindappa N, Hanumanthappa M, Venkatarangaiah K, Kanojia K, Venkatesan K, Chatterjee A, Kusumanchi M, Dave N, Hazra P, Tiwari S, Sastry K (2013) PMT1 gene plays a major role in O-mannosylation of insulin precursor in Pichia pastoris. Protein Expr Purif 88:164–171
Graf A, Gasser B, Dragosits M, Sauer M, Leparc GG, Tüchler T, Kreil DP, Mattanovich D (2008) Novel insights into the unfolded protein response using Pichia pastoris specific DNA microarrays. BMC Genomics 9:390
Guerfal M, Ryckaert S, Jacobs PP, Ameloot P, Van Craenenbroeck K, Derycke R, Callewaert N (2010) The HAC1 gene from Pichia pastoris: characterization and effect of its overexpression on the production of secreted, surface displayed and membrane proteins. Microb Cell Factories 9:49
Hamilton SR, Gerngross TU (2007) Glycosylation engineering in yeast: the advent of fully humanized yeast. Curr Opin Biotechnol 18:387–392
Hamilton SR, Bobrowicz P, Bobrowicz B, Davidson RC, Li H, Mitchell T, Nett JH, Rausch S, Stadheim TA, Wischnewski H, Wildt S, Gerngross TU (2003) Production of complex human glycoproteins in yeast. Science 301:1244–1246
Hamilton SR, Cook WJ, Gomathinayagam S, Burnina I, Bukowski J, Hopkins D, Schwartz S, Du M, Sharkey NJ, Bobrowicz P, Wildt S, Li H, Stadheim TA, Nett JH (2013) Production of sialylated O-linked glycans in Pichia pastoris. Glycobiology 23:1192–1203
Harsay E, Schekman R (2002) A subset of yeast vacuolar protein sorting mutants is blocked in one branch of the exocytic pathway. J Cell Biol 156:271–285
Hatahet F, Ruddock LW (2009) Protein disulfide isomerase: a critical evaluation of its function in disulfide bond formation. Antioxid Redox Signal 11:2807–2850
Hesketh AR, Castrillo JI, Sawyer T, Archer DB, Oliver SG (2013) Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures. Appl Microbiol Biotechnol 97:9747–9762
Hohenblum H, Gasser B, Maurer M, Borth N, Mattanovich D (2004) Effects of gene dosage, promoters, and substrates on unfolded protein stress of recombinant Pichia pastoris. Biotechnol Bioeng 85:367–375
Hoseki J, Ushioda R, Nagata K (2010) Mechanism and components of endoplasmic reticulum-associated degradation. J Biochem 147:19–25
Idiris A, Tohda H, Bi KW, Isoai A, Kumagai H, Giga-Hama Y (2006) Enhanced productivity of protease-sensitive heterologous proteins by disruption of multiple protease genes in the fission yeast Schizosaccharomyces pombe. Appl Microbiol Biotechnol 73:404–420
Inan M, Aryasomayajula D, Sinha J, Meagher MM (2006) Enhancement of protein secretion in Pichia pastoris by overexpression of protein disulfide isomerase. Biotechnol Bioeng 93:771–778
Jacobs PP, Inan M, Festjens N, Haustraete J, Van Hecke A, Contreras R, Meagher MM, Callewaert N (2010) Fed-batch fermentation of GM-CSF-producing glycoengineered Pichia pastoris under controlled specific growth rate. Microb Cell Factories 9:93
Jensen D, Schekman R (2011) COPII-mediated vesicle formation at a glance. J Cell Sci 124:1–4
Jorda J, de Jesus SS, Peltier S, Ferrer P, Albiol J (2014) Metabolic flux analysis of recombinant Pichia pastoris growing on different glycerol/methanol mixtures by iterative fitting of NMR-derived (13)C-labelling data from proteinogenic amino acids. N Biotechnol 31:120–132
Kauffman KJ, Pridgen EM, Doyle FJ 3rd, Dhurjati PS, Robinson AS (2002) Decreased protein expression and intermittent recoveries in BiP levels result from cellular stress during heterologous protein expression in Saccharomyces cerevisiae. Biotechnol Prog 18:942–950
Khatri NK, Gocke D, Trentmann O, Neubauer P, Hoffmann F (2011) Single-chain antibody fragment production in Pichia pastoris: benefits of prolonged pre-induction glycerol feeding. Biotechnol J 6:452–462
Kjeldsen T, Pettersson AF, Hach M (1999) Secretory expression and characterization of insulin in Pichia pastoris. Biotechnol Appl Biochem 29(Pt 1):79–86
Kohno K (2010) Stress-sensing mechanisms in the unfolded protein response: similarities and differences between yeast and mammals. J Biochem 147:27–33
Krysan DJ, Ting EL, Abeijon C, Kroos L, Fuller RS (2005) Yapsins are a family of aspartyl proteases required for cell wall integrity in Saccharomyces cerevisiae. Eukaryot Cell 4:1364–1374
Larsen S, Weaver J, de Sa Campos K, Bulahan R, Nguyen J, Grove H, Huang A, Low L, Tran N, Gomez S, Yau J, Ilustrisimo T, Kawilarang J, Lau J, Tranphung M, Chen I, Tran C, Fox M, Lin-Cereghino J, Lin-Cereghino GP (2013) Mutant strains of Pichia pastoris with enhanced secretion of recombinant proteins. Biotechnol Lett 35:1925–1935
Lesage G, Shapiro J, Specht CA, Sdicu AM, Ménard P, Hussein S, Tong AH, Boone C, Bussey H (2005) An interactional network of genes involved in chitin synthesis in Saccharomyces cerevisiae. BMC Genet 6:8
Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y (2012) Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing. BMC Genomics 13:738
Lin XQ, Liang SL, Han SY, Zheng SP, Ye YR, Lin Y (2013) Quantitative iTRAQ LC-MS/MS proteomics reveals the cellular response to heterologous protein overexpression and the regulation of HAC1 in Pichia pastoris. J Proteomics 91:58–72
Lin-Cereghino GP, Stark CM, Kim D, Chang J, Shaheen N, Poerwanto H, Agari K, Moua P, Low LK, Tran N, Huang AD, Nattestad M, Oshiro KT, Chang JW, Chavan A, Tsai JW, Lin-Cereghino J (2013) The effect of alpha-mating factor secretion signal mutations on recombinant protein expression in Pichia pastoris. Gene 519:311–317
Liu X, Wu D, Wu J, Chen J (2013) Optimization of the production of Aspergillus niger α-glucosidase expressed in Pichia pastoris. World J Microbiol Biotechnol 29:533–540
Loos A, Steinkellner H (2012) IgG-Fc glycoengineering in non-mammalian expression hosts. Arch Biochem Biophys 526:167–173
Losev E, Reinke CA, Jellen J, Strongin DE, Bevis BJ, Glick BS (2006) Golgi maturation visualized in living yeast. Nature 441:1002–1006
Love KR, Politano TJ, Panagiotou V, Jiang B, Stadheim TA, Love JC (2012) Systematic single-cell analysis of Pichia pastoris reveals secretory capacity limits productivity. PLoS One 7:e37915
Maccani A, Landes N, Stadlmayr G, Maresch D, Leitner C, Maurer M, Gasser B, Ernst W, Kunert R, Mattanovich D (2014) Pichia pastoris secretes recombinant proteins less efficiently than Chinese hamster ovary cells but allows higher space-time yields for less complex proteins. Biotechnol J 9:526–537
Malhotra JD, Kaufman RJ (2007) The endoplasmic reticulum and the unfolded protein response. Semin Cell Dev Biol 18:716–731
Margittai E, Sitia R (2011) Oxidative protein folding in the secretory pathway and redox signaling across compartments and cells. Traffic 12:1–8
Marx H, Sauer M, Resina D, Vai M, Porro D, Valero F, Ferrer P, Mattanovich D (2006) Cloning, disruption and protein secretory phenotype of the GAS1 homologue of Pichia pastoris. FEMS Microbiol Lett 264:40–47
Marx H, Mecklenbrauker A, Gasser B, Sauer M, Mattanovich D (2009) Directed gene copy number amplification in Pichia pastoris by vector integration into the ribosomal DNA locus. FEMS Yeast Res 9:1260–1270
Massahi A, Calik P (2015) In-silico determination of Pichia pastoris signal peptides for extracellular recombinant protein production. J Theor Biol 364:179–188
Meehl MA, Stadheim TA (2014) Biopharmaceutical discovery and production in yeast. Curr Opin Biotechnol 30:120–127
Meuris L, Santens F, Elson G, Festjens N, Boone M, Dos Santos A, Devos S, Rousseau F, Plets E, Houthuys E, Malinge P, Magistrelli G, Cons L, Chatel L, Devreese B, Callewaert N (2014) GlycoDelete engineering of mammalian cells simplifies N-glycosylation of recombinant proteins. Nat Biotechnol 32:485–489
Mogelsvang S, Gomez-Ospina N, Soderholm J, Glick BS, Staehelin LA (2003) Tomographic evidence for continuous turnover of Golgi cisternae in Pichia pastoris. Mol Biol Cell 14:2277–2291
Montegna EA, Bhave M, Liu Y, Bhattacharyya D, Glick BS (2012) Sec12 binds to Sec16 at transitional ER sites. PLoS One 7:e31156
Mori K, Kawahara T, Yoshida H, Yanagi H, Yura T (1996) Signalling from endoplasmic reticulum to nucleus: transcription factor with a basic-leucine zipper motif is required for the unfolded protein-response pathway. Genes Cells 1:803–817
Nett JH, Cook WJ, Chen MT, Davidson RC, Bobrowicz P, Kett W, Brevnova E, Potgieter TI, Mellon MT, Prinz B, Choi BK, Zha D, Burnina I, Bukowski JT, Du M, Wildt S, Hamilton SR (2013) Characterization of the Pichia pastoris protein-O-mannosyltransferase gene family. PLoS One 8:e68325
Papanikou E, Glick BS (2014) Golgi compartmentation and identity. Curr Opin Cell Biol 29:74–81
Parekh R, Forrester K, Wittrup D (1995) Multicopy overexpression of bovine pancreatic trypsin inhibitor saturates the protein folding and secretory capacity of Saccharomyces cerevisiae. Protein Expr Purif 6:537–545
Pelham HR, Hardwick KG, Lewis MJ (1988) Sorting of soluble ER proteins in yeast. Embo J 7:1757–1762
Pfeffer M, Maurer M, Kollensperger G, Hann S, Graf AB, Mattanovich D (2011) Modeling and measuring intracellular fluxes of secreted recombinant protein in Pichia pastoris with a novel 34S labeling procedure. Microb Cell Factories 10:47
Pfeffer M, Maurer M, Stadlmann J, Grass J, Delic M, Altmann F, Mattanovich D (2012) Intracellular interactome of secreted antibody Fab fragment in Pichia pastoris reveals its routes of secretion and degradation. Appl Microbiol Biotechnol 93:2503–2512
Protopopov V, Govindan B, Novick P, Gerst JE (1993) Homologs of the synaptobrevin/VAMP family of synaptic vesicle proteins function on the late secretory pathway in S. cerevisiae. Cell 74:855–861
Rakestraw JA, Sazinsky SL, Piatesi A, Antipov E, Wittrup KD (2009) Directed evolution of a secretory leader for the improved expression of heterologous proteins and full-length antibodies in Saccharomyces cerevisiae. Biotechnol Bioeng 103:1192–1201
Resina D, Bollok M, Khatri NK, Valero F, Neubauer P, Ferrer P (2007) Transcriptional response of P. pastoris in fed-batch cultivations to Rhizopus oryzae lipase production reveals UPR induction. Microb Cell Factories 6:21
Rossanese OW, Soderholm J, Bevis BJ, Sears IB, O’Connor J, Williamson EK, Glick BS (1999) Golgi structure correlates with transitional endoplasmic reticulum organization in Pichia pastoris and Saccharomyces cerevisiae. J Cell Biol 145:69–81
Ruohonen L, Toikkanen J, Tieaho V, Outola M, Soderlund H, Keranen S (1997) Enhancement of protein secretion in Saccharomyces cerevisiae by overproduction of Sso protein, a late-acting component of the secretory machinery. Yeast 13:337–351
Sagt CM, Muller WH, van der Heide L, Boonstra J, Verkleij AJ, Verrips CT (2002) Impaired cutinase secretion in Saccharomyces cerevisiae induces irregular endoplasmic reticulum (ER) membrane proliferation, oxidative stress, and ER-associated degradation. Appl Environ Microbiol 68:2155–2160
Schuck S, Gallagher CM, Walter P (2014) ER-phagy mediates selective degradation of endoplasmic reticulum independently of the core autophagy machinery. J Cell Sci 127:4078–4088
Sidrauski C, Walter P (1997) The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response. Cell 90:1031–1039
Sidrauski C, Cox JS, Walter P (1996) tRNA ligase is required for regulated mRNA splicing in the unfolded protein response. Cell 87:405–413
Silva CI, Teles H, Moers AP, Eggink G, de Wolf FA, Werten MW (2011) Secreted production of collagen-inspired gel-forming polymers with high thermal stability in Pichia pastoris. Biotechnol Bioeng 108:2517–2525
Stadlmayr G, Benakovitsch K, Gasser B, Mattanovich D, Sauer M (2010) Genome-scale analysis of library sorting (GALibSo): isolation of secretion enhancing factors for recombinant protein production in Pichia pastoris. Biotechnol Bioeng 105:543–555
TerBush DR, Maurice T, Roth D, Novick P (1996) The Exocyst is a multiprotein complex required for exocytosis in Saccharomyces cerevisiae. Embo J 15:6483–6494
Toikkanen JH, Sundqvist L, Keranen S (2004) Kluyveromyces lactis SSO1 and SEB1 genes are functional in Saccharomyces cerevisiae and enhance production of secreted proteins when overexpressed. Yeast 21:1045–1055
Travers KJ, Patil CK, Wodicka L, Lockhart DJ, Weissman JS, Walter P (2000) Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation. Cell 101:249–258
Vad R, Nafstad E, Dahl L, Gabrielsen O (2005) Engineering of a Pichia pastoris expression system for secretion of high amounts of intact human parathyroid hormone. J Biotechnol 116:251–260
Vai M, Orlandi I, Cavadini P, Alberghina L, Popolo L (1996) Candida albicans homologue of GGP1/GAS1 gene is functional in Saccharomyces cerevisiae and contains the determinants for glycosylphosphatidylinositol attachment. Yeast 12:361–368
Vai M, Brambilla L, Orlandi I, Rota N, Ranzi BM, Alberghina L, Porro D (2000) Improved secretion of native human insulin-like growth factor 1 from gas1 mutant Saccharomyces cerevisiae cells. Appl Environ Microbiol 66:5477–5479
Vanz AL, Lunsdorf H, Adnan A, Nimtz M, Gurramkonda C, Khanna N, Rinas U (2012) Physiological response of Pichia pastoris GS115 to methanol-induced high level production of the Hepatitis B surface antigen: catabolic adaptation, stress responses, and autophagic processes. Microb Cell Factories 11:103
Vanz AL, Nimtz M, Rinas U (2014) Decrease of UPR- and ERAD-related proteins in Pichia pastoris during methanol-induced secretory insulin precursor production in controlled fed-batch cultures. Microb Cell Factories 13:23
Vembar SS, Brodsky JL (2008) One step at a time: endoplasmic reticulum-associated degradation. Nat Rev Mol Cell Biol 9:944–957
Vervecken W, Kaigorodov V, Callewaert N, Geysens S, De Vusser K, Contreras R (2004) In vivo synthesis of mammalian-like, hybrid-type N-glycans in Pichia pastoris. Appl Environ Microbiol 70:2639–2646
Vogl T, Glieder A (2013) Regulation of Pichia pastoris promoters and its consequences for protein production. N Biotechnol 30:385–404
Vogl T, Thallinger GG, Zellnig G, Drew D, Cregg JM, Glieder A, Freigassner M (2014) Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression. N Biotechnol 31:538–552
Whyteside G, Alcocer MJ, Kumita JR, Dobson CM, Lazarou M, Pleass RJ, Archer DB (2011a) Native-state stability determines the extent of degradation relative to secretion of protein variants from Pichia pastoris. PLoS One 6:e22692
Whyteside G, Nor RM, Alcocer MJ, Archer DB (2011b) Activation of the unfolded protein response in Pichia pastoris requires splicing of a HAC1 mRNA intron and retention of the C-terminal tail of Hac1p. FEBS Lett 585:1037–1041
Worby CA, Dixon JE (2014) Unpacking the unfolded protein response. Cell 158:1221–1224
Wu M, Shen Q, Yang Y, Zhang S, Qu W, Chen J, Sun H, Chen S (2013) Disruption of YPS1 and PEP4 genes reduces proteolytic degradation of secreted HSA/PTH in Pichia pastoris GS115. J Ind Microbiol Biotechnol 40:589–599
Yang S, Kuang Y, Li H, Liu Y, Hui X, Li P, Jiang Z, Zhou Y, Wang Y, Xu A, Li S, Liu P, Wu D (2013) Enhanced production of recombinant secretory proteins in Pichia pastoris by optimizing Kex2 P1’ site. PLoS One 8:e75347
Ye J, Ly J, Watts K, Hsu A, Walker A, McLaughlin K, Berdichevsky M, Prinz B, Sean Kersey D, d’Anjou M, Pollard D, Potgieter T (2011) Optimization of a glycoengineered Pichia pastoris cultivation process for commercial antibody production. Biotechnol Prog 27:1744–1750
Zanetti G, Prinz S, Daum S, Meister A, Schekman R, Bacia K, Briggs JA (2013) The structure of the COPII transport-vesicle coat assembled on membranes. Elife 2:e00951
Zhang W, Zhao HL, Xue C, Xiong XH, Yao XQ, Li XY, Chen HP, Liu ZM (2006) Enhanced secretion of heterologous proteins in Pichia pastoris following overexpression of Saccharomyces cerevisiae chaperone proteins. Biotechnol Prog 22:1090–1095
Zhong Y, Yang L, Guo Y, Fang F, Wang D, Li R, Jiang M, Kang W, Ma J, Sun J, Xiao W (2014) High-temperature cultivation of recombinant Pichia pastoris increases endoplasmic reticulum stress and decreases production of human interleukin-10. Microb Cell Factories 13:163
Acknowledgments
Research on Pichia pastoris in our laboratory is supported by the Austrian Science Fund (FWF), the Austrian Research Promotion Agency and by the Federal Ministry of Science, Research and Economy (BMWFW), the Federal Ministry of Traffic, Innovation and Technology (bmvit), the Styrian Business Promotion Agency SFG, the Standortagentur Tirol and ZIT—Technology Agency of the City of Vienna through the COMET-Funding Program managed by the Austrian Research Promotion Agency FFG. Further support by Polymun Scientific GmbH, Biomin Research Center, Boehringer-Ingelheim RCV, Lonza AG, Biocrates Life Sciences AG, VTU Technology GmbH and Sandoz GmbH is acknowledged. We thank the BOKU-VIBT Imaging Center for access to Leica fluorescence microscope devices.
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Puxbaum, V., Mattanovich, D. & Gasser, B. Quo vadis? The challenges of recombinant protein folding and secretion in Pichia pastoris . Appl Microbiol Biotechnol 99, 2925–2938 (2015). https://doi.org/10.1007/s00253-015-6470-z
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DOI: https://doi.org/10.1007/s00253-015-6470-z