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Phenazine-1-carboxylic acid production in a chromosomally non-scar triple-deleted mutant Pseudomonas aeruginosa using statistical experimental designs to optimize yield

  • Applied genetics and molecular biotechnology
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Abstract

We constructed a non-scar triple-deleted mutant Pseudomonas aeruginosa to improve phenazine-1-carboxylic acid (PCA) yield and then optimized the culture conditions for PCA production. Using a non-scar deletion strategy, the 5′-untranslated region of the phz1 gene cluster and two genes, phzM and phzS, were knocked out of the P. aeruginosa strain M18 genome. The potential ability for high-yield PCA production in this triple-deleted mutant M18MSU1 was successfully realized by using statistical experimental designs. A 25–1 fractional factorial design was used to show that the three culture components of soybean meal, corn steep liquor and ethanol had the most significant effect on PCA production. Using a central composite design, the concentration of the three components was optimized. The maximum PCA production was predicted to be 4,725.1 mg/L. With the optimal medium containing soybean meal 74.25 g/L, corn steep liquor 13.01 g/L and ethanol 21.84 ml/L, a PCA production of 4,771.2 mg/L was obtained in the validation experiments, which was nearly twofold of that before optimization and tenfold of that in the wild-type strain. This non-scar triple-deleted mutant M18MSU1 may be a suitable strain for industrial production of this biologically synthesized fungicide due to its high PCA production, presumed safety, thermal adaptability and cost-effectiveness.

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References

  • Anja B, Kirsty AM, Heather RM, Sandra C, Ilaria M, Simon LD, Stephen L (2009) The GacS/GacA signal transduction system of Pseudomonas aeruginosa acts exclusively through its control over the transcription of the RsmY and RsmZ regulatory small RNAs. Mol Microbiol 73:434–445

    Article  Google Scholar 

  • Chin-A-Woeng TFC, Bloemberg GV, van der Bij AJ, van der Drift KMGF, Schripsema J, Kroon B, Scheffer RJ, Keel C, Bakker PAHM, de Tichy HV, Bruijn FJ, Thomas-Oates JE, Lugtenberg BJJ (1998) Biocontrol by phenazine-1-carboxamide-producing Pseudomonas chlororaphis PCL1391 of tomato root rot caused by Fusarium oxysporum f. sp. radicis-lycopersici. Mol Plant-Microbe Interact 11:1069–1077

    Article  CAS  Google Scholar 

  • Chin-A-Woeng TFC, Thomas-Oates JE, Lugtenberg BJJ, Bloemberg GV (2001) Introduction of the phzH gene of Pseudomonas chlororaphis PCL1391 extends the range of biocontrol ability of phenazine-1-carboxylic acid-producing Pseudomonas spp. strains. Mol Plant-Microbe Interact 14:1006–1015

    Article  PubMed  CAS  Google Scholar 

  • Delaney SM, Mavrodi DV, Bonsall RF, Thomashow LS (2001) phzO, a gene for biosynthesis of 2-hydrolyated phenazine compounds in Pseudomonas aureofaciens 30-84. J Bacteriol 183:318–327

    Article  PubMed  CAS  Google Scholar 

  • Essar DW, Eberly L, Hadero A, Crawford IP (1990) Identification and characterization of genes for a second anthranilate synthase in Pseudomonas aeruginosa: interchangeability of the two anthranilate synthases and evolutionary implications. J Bacteriol 172:884–900

    PubMed  CAS  Google Scholar 

  • Gao H, Liu M, Liu J, Dai H, Zhou X, Liu X, Zhuo Y, Zhang W, Zhang L (2009) Medium optimization for the production of avermectin B1a by Streptomyces avermitilis 14-12A using response surface methodology. Bioresour Technol 100:4012–4016

    Article  PubMed  CAS  Google Scholar 

  • Ge YH, Huang XQ, Wang SL, Zhang XH, Xu YQ (2004) Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18. FEMS Microbiol Lett 237:41–47

    Article  PubMed  CAS  Google Scholar 

  • Gibson J, Sood A, Hogan DA (2009) Pseudomonas aeruginosaCandida albicans interactions: localization and fungal toxicity of a phenazine derivative. Appl Environ Microbiol 75:504–513

    Article  PubMed  CAS  Google Scholar 

  • Gripenland J, Netterling S, Loh E, Tiensuu T, Toledo-Arana A, Johansson J (2010) RNAs: regulators of bacterial virulence. Nat Rev Microbiol 8:857–866

    Article  PubMed  CAS  Google Scholar 

  • Guo WQ, Ren NQ, Wang XJ, Xiang WS, Ding J, You Y, Liu BF (2009) Optimization of culture conditions for hydrogen production by Ethanoligenens harbinense B49 using response surface methodology. Bioresour Technol 100:1192–1196

    Article  PubMed  CAS  Google Scholar 

  • Heckman KL, Pease LR (2007) Gene splicing and mutagenesis by PCR-driven overlap extension. Nat Protoc 2:924–932

    Article  PubMed  CAS  Google Scholar 

  • Hoffmann A, Thimm T, Droge M, Moore ERB, Munch JC, Tebbe CC (1998) Intergeneric transfer of conjugative and mobilizable plasmids harbored by Escherichia coli in the gut of the soil microarthropod Folsomia candida (Collembola). Appl Environ Microbiol 64:2652–2659

    PubMed  CAS  Google Scholar 

  • Hu HB, Xu YQ, Chen F, Zhang XH, Hur BK (2005) Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine 1-carboxylic acid and pyoluteorin. J Microbiol Biotechnol 15:86–90

    CAS  Google Scholar 

  • Huang JF, Xu YQ, Zhang HY, Li YQ, Huang XQ, Ren B, Zhang XH (2009) Temperature-dependent expression of phzM and its regulatory genes lasI and ptsP in rhizosphere isolate Pseudomonas sp. strain M18. Appl Environ Microbiol 75:6568–6580

    Article  PubMed  CAS  Google Scholar 

  • Karine L, Mario S, Frédéric HTA, Dieter H (2008) Gac/Rsm signal transduction pathway of r-proteobacteria:from RNA recognition to regulation of social behaviour. Mol Microbiol 67:241–253

    Google Scholar 

  • Kennedy M, Krouse D (1999) Strategies for improving fermentation medium performance: a review. J Ind Microbiol Biotechnol 23:456–475

    Article  CAS  Google Scholar 

  • Lee JY, Moon SS, Hwang BK (2003) Isolation and in vitro and in vivo activity against Phytophthora capsici and Colletotrichum orbiculare of phenazine-1-carboxylic acid from Pseudomonas aeruginosa strain GC-B26. Pest Manag Sci 59:872–882

    Article  PubMed  CAS  Google Scholar 

  • Li YQ, Jiang HX, Xu YQ, Zhang XH (2008) Optimization of nutrient components for enhanced phenazine-1-carboxylic acid production by gacA-inactivated Pseudomonas sp. M18G using response surface method. Appl Microbiol Biotechnol 77:1207–1217

    Article  PubMed  CAS  Google Scholar 

  • Li YQ, Jiang HX, Du XL, Huang XQ, Zhang XH, Xu YQ (2010) Enhancement of phenazine-1-carboxylic acid production using batch and fed-batch culture of gacA inactivated Pseudomonas sp. M18G. Bioresour Technol 101:3649–3656

    Article  PubMed  CAS  Google Scholar 

  • Li YQ, Du XL, Lu ZJ, Wu DQ, Zhao YL, Ren B, Huang JF, Huang XQ, Xu YQ (2011) Regulatory feedback loop of two phz gene clusters through 5'-untranslated regions in Pseudomonas sp. M18. PLoS One 6:e19413

    Article  PubMed  CAS  Google Scholar 

  • Mario S, Karine L, Olivier D, Florian CO, Ilian J, Dieter H, Frédéric HTA (2007) Molecular basis of messenger RNA recognition by the specific bacterial repressing clamp RsmA/CsrA.Nat Struc. Mol Biol 14:807–813

    Google Scholar 

  • Mavrodi DV, Ksenzenko VN, Bonsall RF, Cook RJ, Boronin AM, Thomashow LS (1998) A seven-gene locus for synthesis is of phenazine-1-carboxylic acid by Pseudomonas fluorescens 2-79. J Bacteriol 180:2541–2548

    PubMed  CAS  Google Scholar 

  • Mavrodi DV, Bonsall RF, Delaney SM, Soule MJ, Phillips G, Thomashow LS (2001) Functional analysis of genes for biosynthesis of pyocyanin and phenazine-1-carboxamide from Pseudomonas aeruginosa PAO1. J Bacteriol 183:6454–6465

    Article  PubMed  CAS  Google Scholar 

  • Mavrodi DV, Bleimling N, Thomashow LS, Blankenfeldt W (2004) The purification, crystallization and preliminary structural characterization of PhzF, a key enzyme in the phenazine-biosynthesis pathway from Pseudomonas fluorescens 2-79. Acta Crystallogr D Biol Crystallogr 60:184–186

    Article  PubMed  Google Scholar 

  • Parsons JF, Song FH, Parsons L, Calabrese K, Eisenstein E, Ladner JE (2004) Structure and function of the phenazine biosynthesis protein PhzF from Pseudomonas fluorescens 2-79. Biochem 43:12427–12435

    Article  CAS  Google Scholar 

  • Schafer A, Tauch A, Jager W, Kalinowski J, Thierbach G, Puhler A (1994) Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145:69–73

    Article  PubMed  CAS  Google Scholar 

  • Schisler DA, Slininger PJ (1997) Microbial selection strategies that enhance the likelihood of developing commercial biological control products. J Ind Microbio Biotechnol 19:172–179

    Article  CAS  Google Scholar 

  • Shtark O, Shaposhnikov AI, Kravchenko LV (2003) The production of antifungal metabolites by Pseudomonas chlororaphis grown on different nutrient sources. Mikrobiologiia 72:645–650

    PubMed  Google Scholar 

  • Su JJ, Zhou Q, Zhang HY, Li YQ, Huang XQ, Xu YQ (2010) Medium optimization for phenazine-1-carboxylic acid production by a gacA qscR double mutant of Pseudomonas sp. M18 using response surface methodology. Bioresour Technol 101:4089–4095

    Article  PubMed  CAS  Google Scholar 

  • Tang XJ, He GQ, Chen QH, Zhang XY, Ali MA (2004) Medium optimization for the production of thermal stable beta-glucanase by Bacillus subtilis ZJF-1A5 using response surface methodology. Bioresour Technol 93:175–181

    Article  PubMed  CAS  Google Scholar 

  • Thomashow LS, Weller DM (1988) Role of a phenazine antibiotic from Pseudomonas fluorescens in biological control of Gaeumannomyces graminis var. tritici. J Bacteriol 170:3499–3508

    PubMed  CAS  Google Scholar 

  • Thomashow LS, Weller DM, Bonsall RF, Pierson LS (1990) Production of the antibiotic phenazine-1-carboxylic Acid by fluorescent Pseudomonas species in the rhizosphere of wheat. Appl Environ Microbiol 56:908–912

    PubMed  CAS  Google Scholar 

  • Wang Y, Huang XQ, Hu HB, Zhang XH, Xu YQ (2008) QscR acts as an intermediate in gacA-dependent regulation of PCA biosynthesis in Pseudomonas sp. M-18. Curr Microbiol 56:339–345

    Article  PubMed  CAS  Google Scholar 

  • Weller DM (1984) Distribution of a take-all suppressive strain of Pseudomonas fluorescens on seminal roots of winter wheat. Appl Environ Microbiol 48:897–899

    PubMed  CAS  Google Scholar 

  • Weller DM (2007) Pseudomonas biocontrol agents of soilborne pathogens: looking back over 30 years. Phytopathology 97:250–256

    Article  PubMed  Google Scholar 

  • Wu DQ, Ye J, Ou HY, Wei X, Huang XQ, He YW, Xu YQ (2011) Genomic analysis and temperature-dependent transcriptome profiles of the rhizosphere originating strain Pseudomonas aeruginosa M18. BMC Genomics 12:438

    Article  PubMed  CAS  Google Scholar 

  • Yuan LL, Li YQ, Wang Y, Zhang XH, Xu YQ (2008) Optimization of critical medium components using response surface methodology for phenazine-1-carboxylic acid production by Pseudomonas sp. M-18Q. J Biosci Bioeng 105:232–237

    Article  PubMed  CAS  Google Scholar 

  • Zhou Q, Su JJ, Jiang HX, Huang XQ, Xu YQ (2010) Optimization of phenazine-1-carboxylic acid production by a gacA/qscR-inactivated Pseudomonas sp. M18GQ harboring pME6032Phz using response surface methodology. Appl Microbiol Biotechnol 86:1761–1773

    Article  PubMed  CAS  Google Scholar 

Download references

Acknowledgments

This study was supported by the National Key Basic Research Program (973 Program, No. 2009CB118906) and the Shanghai Science and Technology Program (No. 08391911900). We are very grateful to Dr. Ya-Wen He for his technical assistance, the referees and editor for their helpful and valuable suggestions and revisions.

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Correspondence to Yuquan Xu.

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Du, X., Li, Y., Zhou, W. et al. Phenazine-1-carboxylic acid production in a chromosomally non-scar triple-deleted mutant Pseudomonas aeruginosa using statistical experimental designs to optimize yield. Appl Microbiol Biotechnol 97, 7767–7778 (2013). https://doi.org/10.1007/s00253-013-4921-y

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