Skip to main content
Log in

Assessment of Schwanniomyces occidentalis as a host for protein production using the wide-range Xplor®2 expression platform

  • Applied genetics and molecular biotechnology
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

The wide-range transformation/expression platform, Xplor®2, was employed for the assessment of Schwanniomyces occidentalis as a potential producer of the recombinant proteins human IFNα2a (IFNα2a) and S. occidentalis fructofuranosidase (SFfase), and its efficiency was compared to that of Arxula adeninivorans. ADE2 and URA3 genes from both yeast species were isolated, characterized and used as selection markers in combination with the IFNα2a and SFfase expression modules, which used the strong constitutive A. adeninivorans-derived TEF1 promoter. Yeast rDNA integrative expression cassettes and yeast integrative expression cassettes equipped with a selection marker and expression modules were transformed into auxotrophic S. occidentalis and A. adeninivorans strains and a quantitative comparison of the expression efficiency was made. Whilst IFNα2a was mainly accumulated extracellularly (>95 %) in A. adeninivorans, extracellular SFfase (>90 %) was detected in both yeast species. The DNA composition of the selection marker modules and expression modules, especially their open reading frame codon usage, affects auxotrophy recovery as well as protein expression. Auxotrophy recovery was only achieved with selection marker modules of the homologous gene donor yeast. The concentration of recombinant IFNα2a was fivefold higher in A. adeninivorans (1 mg L−1), whereas S. occidentalis accumulated 1.5- to 2-fold more SFfase (0.5 Units ml−1). These results demonstrate the extension of the use of the wide-range expression platform Xplor®2 to another yeast species of biotechnological interest.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  • Abarca D, Fernández-Lobato M, Claros MG, Jiménez A (1989) Isolation and expression in Saccharomyces cerevisiae of a gene encoding an α-amylase from Schwanniomyces castellii. FEBS Lett 255:455–459

    Article  CAS  Google Scholar 

  • Álvaro-Benito M, de Abreu M, Fernández-Arrojo L, Plou FJ, Jiménez-Barbero J, Ballesteros A, Polaina J, Fernández-Lobato M (2007) Characterization of a β-fructofuranosidase from Schwanniomyces occidentalis with transfructosylating activity yielding the prebiotic 6-kestose. J Biotechnol 132:75–81

    Article  Google Scholar 

  • Álvaro-Benito M, Polo A, González B, Fernández-Lobato M, Sanz-Aparicio J (2010a) Structural and kinetic analysis of Schwanniomyces occidentalis invertase reveals a new oligomerization pattern and the role of its supplementary domain in substrate binding. J Biol Chem 285:13930–13941

    Article  Google Scholar 

  • Álvaro-Benito M, de Abreu M, Portillo F, Sanz-Aparicio J, Fernández-Lobato M (2010b) New insights into the fructosyltransferase activity of Schwanniomyces occidentalis β-fructofuranosidase, emerging from nonconventional codon usage and directed mutation. Appl Environ Microbiol 76:7491–7499

    Article  Google Scholar 

  • Álvaro-Benito M, Sanz-Polo MA, González-Pérez D, González B, Plou FJ, Fernández-Lobato M, Sanz-Aparicio J (2012) Structural and kinetic insights reveal that the amino acid pair GLN228/ASN254 modulates the transfructosylating specificity of Schwanniomyces occidentalis β-fructofuranosidase, an enzyme that produces prebiotics. J Biol Chem 287:19674–19686

    Article  Google Scholar 

  • Barnett JA, Payne RW, Yarrow D (2000) Yeasts: characteristics and identification, 3rd edn. Cambridge University Press, Cambridge

    Google Scholar 

  • Böer E, Steinborn G, Matros A, Mock HP, Gellissen G, Kunze G (2007) Production of interleukin-6 in Arxula adeninivorans, Hansenula polymorpha and Saccharomyces cerevisiae by applying the wide-range yeast vector (CoMed™) system to simultaneously comparative assessment. FEMS Yeast Res 7:1181–1187

    Article  Google Scholar 

  • Böer E, Bode R, Mock HP, Piontek M, Kunze G (2009a) Atan1p—an extracellular tannase from the dimorphic yeast Arxula adeninivorans: molecular cloning of the ATAN1 gene and characterization of the recombinant enzyme. Yeast 26:323–337

    Article  Google Scholar 

  • Böer E, Piontek M, Kunze G (2009b) Xplor®2—a new transformation/expression system for recombinant protein production in the yeast Arxula adeninivorans. Appl Microbiol Biotechnol 84:583–594

    Article  Google Scholar 

  • Böer E, Breuer FS, Weniger M, Denter S, Piontek M, Kunze G (2011) Large-scale production of tannase using the yeast Arxula adeninivorans. Appl Microbiol Biotechnol 92:105–114

    Article  Google Scholar 

  • Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72:248–254

    Article  CAS  Google Scholar 

  • Cappriotti A (1957) New blastomycetes isolated from soils of Spain. I. Schwanniomyces castelii nov. spec. Arch Microbiol 26:434–438

    Google Scholar 

  • Celik E, Calik P (2012) Production of recombinant proteins by yeast cells. Biotechnol Adv 30:1108–1118

    Article  CAS  Google Scholar 

  • Dmitriev V, Crowley D, Rogachevsky VV, Negri CM, Rusakova TG, Kolesnikova SA, Akhmetov LI (2011) Microorganisms form exocellular structures, trophosomes, to facilitate biodegradation of oil in aqueous media. FEMS Microbiol Lett 315:134–140

    Article  CAS  Google Scholar 

  • Dohmen RJ, Strasser AM, Höner CB, Hollenberg CP (1991) An efficient transformation procedure enabling long-term storage of competent cells of various yeast genera. Yeast 7:691–692

    Article  CAS  Google Scholar 

  • Gellissen G (2005) Production of recombinant proteins—novel microbial and eukaryotic expression systems. Wiley-VCH, Weinheim

    Google Scholar 

  • Gellissen G, Kunze G, Gaillardin C, Cregg JM, Beradi E, Veenhuis M, van der Klei I (2005) New yeast expression platforms based on methylotrophic Hansenula polymorpha and Pichia pastoris and on dimorphic Arxula adeninivorans and Yarrowia lipolytica—a comparison. FEMS Yeast Res 5:1079–1096

    Article  CAS  Google Scholar 

  • Giersberg M, Degelmann A, Bode R, Piontek M, Kunze G (2012) Production of a thermostable alcohol dehydrogenase from Rhodococcus ruber in three different yeast species using the Xplor®2 transformation/expression platform. J Ind Microbiol Biotechnol 39:1385–1396

    Article  CAS  Google Scholar 

  • Gourdon P, Janatova I, Meilhoc E, Klein RD, Costaglioli P, Masson JM (1995) Sequence analysis of the ADE2 gene coding for phosporibosylaminoimidazole carboxylase in Schwanniomyces occidentalis. Yeast 11:1289–1293

    Article  CAS  Google Scholar 

  • Janatova I, Costaglioli P, Wesche J, Masson JM, Meilhoc E (2003) Development of a reporter system for the yeast Schwanniomyces occidentalis: influence of DNA composition and codon usage. Yeast 20:687–701

    Article  CAS  Google Scholar 

  • Johannsen E, van der Walt JP (1980) Hybridization studies within the genus Schwanniomyces Klöcker. Can J Microbiol 26:1199–1203

    Article  CAS  Google Scholar 

  • Kaiser C, Uhlig S, Gerlach T, Körner M, Simon K, Kunath K, Floschütz K, Baronian K, Kunze G (2010) Evaluation and validation of a novel Arxula adeninivorans estrogen screen (nAES) assay and its application in analysis of wastewater, seawater, brackish and urine. Sci Total Environ 408:6017–6026

    Article  CAS  Google Scholar 

  • Klabunde J, Kunze G, Gellissen G, Hollenberg CP (2003) Integration of heterologous genes in several yeast species using vectors containing a Hansenula polymorpha-derived rDNA-targeting element. FEMS Yeast Res 4:185–193

    Article  CAS  Google Scholar 

  • Klein RD, Favreau MA (1988) Transformation of Schwanniomyces occidentalis with an ADE2 gene cloned from S. occidentalis. J Bacteriol 170:5572–5578

    CAS  Google Scholar 

  • Klein RD, Roof LL (1988) Cloning of the orotidine 5′-phospatase decarboxilase (ODC) gene of Schwanniomyces occidentalis by complementation of the ura3 mutation in S. cerevisiae. Curr Genet 13:29–35

    Article  CAS  Google Scholar 

  • Kunze G, Kunze I (1994) Characterization of Arxula adeninivorans strains from different habitats. Antonie van Leeuwenhoek 65:607–614

    Article  Google Scholar 

  • Kunze I, Nilsson C, Adler K, Manteuffel R, Horstmann C, Bröker M, Kunze G (1998) Correct targeting of a vacuolar tobacco chitinase in Saccharomyces cerevisiae—post-translational modifications are dependent on the host strain. Biochim Biophys Acta 1395:329–344

    Article  CAS  Google Scholar 

  • Linde D, Macias I, Fernández-Arrojo L, Plou FJ, Jiménez A, Fernandez-Lobato M (2009) Molecular and biochemical characterization of a ß-fructofuranosidase from Xantophyllomyces dendrorhous. Appl Environ Microbiol 75:1065–1073

    Article  CAS  Google Scholar 

  • Puigbo P, Bravo IG, Garcia-Valle S (2008) E-CAI: a novel server to estimate an expected value for Codon Adaptation Index (eCAI). BMC Bioinforma 9:65

    Article  Google Scholar 

  • Robinson JS, Klionsky DJ, Banta LM, Emr SD (1988) Protein sorting in Saccharomyces cerevisiae: isolation of mutants defective in the delivery and processing of multiple vacuolar hydrolases. Mol Cell Biol 8:4936–4948

    CAS  Google Scholar 

  • Rose MD, Winston F, Hieter P (1990) Methods in yeast genetics. A laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor

    Google Scholar 

  • Rösel H, Kunze G (1998) Integrative transformation of the dimorphic yeast Arxula adeninivorans LS3 based on hygromycin B resistance. Curr Genet 33:157–163

    Article  Google Scholar 

  • Samsonova IA, Kunze G, Bode R, Böttcher F (1996) A set of genetic markers for the chromosomes of the imperfect yeast Arxula adeninivorans. Yeast 12:1209–1217

    Article  CAS  Google Scholar 

  • Sharp PM, Li WH (1987) The Codon Adaptation Index—a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res 15:1281–1295

    Article  CAS  Google Scholar 

  • Steinborn G, Wartmann T, Gellissen G, Kunze G (2007a) Construction of an Arxula adeninivorans host–vector system based on trp1 complementation. J Biotechnol 127:392–401

    Article  CAS  Google Scholar 

  • Steinborn G, Gellissen G, Kunze G (2007b) A novel vector element providing multicopy vector integration in Arxula adeninivorans. FEMS Yeast Res 7:1197–1205

    Article  CAS  Google Scholar 

  • Tanaka A, Ohnishi N, Fukui S (1967) Studies on the formation of vitamins and their function in hydrocarbon fermentation. Production of vitamin B6 by Candida albicans in hydrocarbon medium. J Ferment Technol 45:617–623

    CAS  Google Scholar 

  • Terentiev Y, Pico AH, Böer E, Wartmann T, Klabunde J, Breuer U, Babel W, Suckow M, Gellissen G, Kunze G (2004) A wide-range integrative yeast expression vector system based on Arxula adeninivorans-derived elements. J Ind Microbiol Biotechnol 31:223–228

    Article  CAS  Google Scholar 

  • Wang TT, Lee BH (1997) Transformation system for Schwanniomyces occidentalis. Biotechnol Tech 11:307–309

    Article  Google Scholar 

  • Wang TT, Lee CF, Lee BH (1999) The molecular biology of Schwanniomyces occidentalis Klocker. Crit Rev Biotechnol 19:113–143

    Article  CAS  Google Scholar 

  • Wartmann T, Stephan UW, Bube I, Boër E, Melzer M, Manteuffel R, Stoltenburg R, Guengerich L, Gellissen G, Kunze G (2002) Post-translational modifications of the AFET3 gene product—a component of the iron transport system in budding cells and mycelia of the yeast Arxula adeninivorans. Yeast 19:849–862

    Article  CAS  Google Scholar 

  • Wartmann T, Stoltenburg R, Böer E, Sieber H, Bartelsen O, Gellissen G, Kunze G (2003a) The ALEU2 gene—a new component for an Arxula adeninivorans-based expression platform. FEMS Yeast Res 3:223–232

    Article  CAS  Google Scholar 

  • Wartmann T, Boër E, Pico AH, Sieber H, Bartelsen O, Gellissen G, Kunze G (2003b) High-level production and secretion of recombinant proteins by the dimorphic yeast Arxula adeninivorans. FEMS Yeast Res 2:363–369

    Google Scholar 

Download references

Acknowledgments

MAB was founded by a Comunidad de Madrid Fellowship and granted by the Universidad Autónoma de Madrid. We would like to thank I. Schmeling and A. Martín for excellent technical assistance. Part of this study is based upon work funded National project BIO2010-20508-C04-04 and by an institutional grant from the Fundación Ramón Areces to the Centro de Biología Molecular Severo Ochoa.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gotthard Kunze.

Electronic supplementary material

Below is the link to the electronic supplementary material.

ESM 1

(DOCX 21 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Álvaro-Benito, M., Fernández-Lobato, M., Baronian, K. et al. Assessment of Schwanniomyces occidentalis as a host for protein production using the wide-range Xplor®2 expression platform. Appl Microbiol Biotechnol 97, 4443–4456 (2013). https://doi.org/10.1007/s00253-012-4527-9

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-012-4527-9

Keywords

Navigation