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An update on microbial carotenoid production: application of recent metabolic engineering tools

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Abstract

Carotenoids are ubiquitous pigments synthesized by plants, fungi, algae, and bacteria. Industrially, carotenoids are used in pharmaceuticals, neutraceuticals, and animal feed additives, as well as colorants in cosmetics and foods. Scientific interest in dietary carotenoids has increased in recent years because of their beneficial effects on human health, such as lowering the risk of cancer and enhancement of immune system function, which are attributed to their antioxidant potential. The availability of carotenoid genes from carotenogenic microbes has made possible the synthesis of carotenoids in non-carotenogenic microbes. The increasing interest in microbial sources of carotenoid is related to consumer preferences for natural additives and the potential cost effectiveness of creating carotenoids via microbial biotechnology. In this review, we will describe the recent progress made in metabolic engineering of non-carotenogenic microorganisms with particular focus on the potential of Escherichia coli for improved carotenoid productivity.

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References

  • Alper H, Jin YS, Moxley JF, Stephanopoulos G (2005a) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab Eng 7:155–164

    Article  CAS  PubMed  Google Scholar 

  • Alper H, Miyaoku K, Stephanopoulos G (2005b) Construction of lycopene-overproducing E. coli strains by combining systematic and combinatorial gene knockout targets. Nat Biotechnol 23:612–616

    Article  CAS  PubMed  Google Scholar 

  • Alper H, Miyaoku K, Stephanopoulos G (2006) Characterization of lycopene-overproducing E. coli strains in high cell density fermentations. Appl Microbiol Biotechnol 72:968–974

    Article  CAS  PubMed  Google Scholar 

  • Armstrong GA (1994) Eubacteria show their true colors: genetics of carotenoid pigment biosynthesis from microbes to plants. J Bacteriol 176:4795–4802

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Armstrong GA (1997) Genetics of eubacterial carotenoid biosynthesis: a colorful tale. Annu Rev Microbiol 51:629–659

    Article  CAS  PubMed  Google Scholar 

  • Barkovich R, Liao JC (2001) Metabolic engineering of isoprenoids. Metab Eng 3:27–39

    Article  CAS  PubMed  Google Scholar 

  • Boucher Y, Doolittle WF (2000) The role of lateral gene transfer in the evolution of isoprenoid biosynthesis pathways. Mol Microbiol 37:703–716

    Article  CAS  PubMed  Google Scholar 

  • Cheng Q (2006) Structural diversity and functional novelty of new carotenoid biosynthesis genes. J Ind Microbiol Biotechnol 33:552–559

    Article  CAS  PubMed  Google Scholar 

  • Cunningham FX Jr, Chamovitz D, Misawa N, Gantt E, Hirschberg J (1993) Cloning and functional expression in Escherichia coli of a cyanobacterial gene for lycopene cyclase, the enzyme that catalyzes the biosynthesis of β-carotene. FEBS Lett 328:130–138

    Article  CAS  PubMed  Google Scholar 

  • Farmer WR, Liao JC (2001) Precursor balancing for metabolic engineering of lycopene production in Escherichia coli. Biotechnol Prog 17:57–61

    Article  CAS  PubMed  Google Scholar 

  • Fraser PD, Miura Y, Misawa N (1997) In vitro characterization of astaxanthin biosynthetic enzymes. J Biol Chem 272:6128–6135

    Article  CAS  PubMed  Google Scholar 

  • Hamano Y, Dairi T, Yamamoto M, Kuzuyama T, Itoh N, Seto H (2002) Growth-phase dependent expression of the mevalonate pathway in a terpenoid antibiotic-producing Streptomyces strain. Biosci Biotechnol Biochem 66:808–819

    Article  CAS  PubMed  Google Scholar 

  • Jacobson GK, Jolly SO, Sedmark JJ, Skatrud TJ, Wasileski JM (2000) Astaxanthin over-producing strains of Phaffia rhodozyma. Method for their cultivation and their use in animal feeds. United States Patent 6,413,736 B1

  • Jin YS, Stephanopoulos G (2007) Multi-dimensional gene target search for improving lycopene biosynthesis in Escherichia coli. Metab Eng 9:337–347

    Article  CAS  PubMed  Google Scholar 

  • Kang MJ, Lee YM, Yoon SH, Kim JH, Ock SW, Jung KH, Shin YC, Keasling JD, Kim SW (2005) Identification of genes affecting lycopene accumulation in Escherichia coli using a shot-gun method. Biotechnol Bioeng 91:636–642

    Article  CAS  PubMed  Google Scholar 

  • Kim SW, Kim JB, Jung WH, Kim JH, Jung JK (2006) Over-production of beta-carotene from metabolically engineered Escherichia coli. Biotechnol Lett 28:897–904

    Article  CAS  PubMed  Google Scholar 

  • Lee PC, Schmidt-Dannert C (2002) Metabolic engineering towards biotechnological production of carotenoids in microorganisms. Appl Microbiol Biotechnol 60:1–11

    Article  CAS  PubMed  Google Scholar 

  • Lee PC, Mijts BN, Schmidt-Dannert C (2004) Investigation of factors influencing production of the monocyclic carotenoid torulene in metabolically engineered Escherichia coli. Appl Microbiol Biotechnol 65:538–546

    CAS  PubMed  Google Scholar 

  • Lee PC, Petri R, Mijts BN, Watts KT, Schmidt-Dannert C (2005) Directed evolution of Escherichia coli farnesyl diphosphate synthase (IspA) reveals novel structural determinants of chain length specificity. Metab Eng 7:18–26

    Article  CAS  PubMed  Google Scholar 

  • Lichtenthaler HK, Rohmer M, Schwender J (1997) Two independent biochemical pathways for isopentenyl diphosphate and isoprenoid biosynthesis in higher plants. Physiologia Plantarum 101:643–652

    Article  CAS  Google Scholar 

  • Martin VJ, Yoshikuni Y, Keasling JD (2001) The in vivo synthesis of plant sesquiterpenes by Escherichia coli. Biotechnol Bioeng 75:497–503

    Article  CAS  PubMed  Google Scholar 

  • Martin VJ, Pitera DJ, Withers ST, Newman JD, Keasling JD (2003) Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nat Biotechnol 21:796–802

    Article  CAS  PubMed  Google Scholar 

  • Maury J, Asadollahi MA, Moller K, Clark A, Nielsen J (2005) Microbial isoprenoid production: an example of green chemistry through metabolic engineering. Adv Biochem Eng Biotechnol 100:19–51

    CAS  PubMed  Google Scholar 

  • Mehta BJ, Obraztsova IN, Cerda-Olmedo E (2003) Mutants and intersexual heterokaryons of Blakeslea trispora for production of beta-carotene and lycopene. Appl Environ Microbiol 69:4043–4048

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Misawa N, Shimada H (1998) Metabolic engineering for the production of carotenoids in non-carotenogenic bacteria and yeasts. J Biotechnol 59:169–181

    Article  CAS  Google Scholar 

  • Misawa N, Nakagawa M, Kobayashi K, Yamano S, Izawa Y, Nakamura K, Harashima K (1990) Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli. J Bacteriol 172:6704–6712

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Nishizaki T, Tsuge K, Itaya M, Doi N, Yanagawa H (2007) Metabolic engineering of carotenoid biosynthesis in Escherichia coli by ordered gene assembly in Bacillus subtilis. Appl Environ Microbiol 73:1355–1361

    Article  CAS  PubMed  Google Scholar 

  • Olaizola M (2000) Commercial production of astaxanthin from Haematococcus pluvialis using 25,000-liter outdoor photobioreactors. J Appl Phycol 12:499–506

    Article  CAS  Google Scholar 

  • Pfleger BF, Pitera DJ, Smolke CD, Keasling JD (2006) Combinatorial engineering of intergenic regions in operons tunes expression of multiple genes. Nat Biotechnol 24:1027–1032

    Article  CAS  PubMed  Google Scholar 

  • Pitera DJ, Paddon CJ, Newman JD, Keasling JD (2007) Balancing a heterologous mevalonate pathway for improved isoprenoid production in Escherichia coli. Metab Eng 9:193–207

    Article  CAS  PubMed  Google Scholar 

  • Raja R, Hemaiswarya S, Rengasamy R (2007) Exploitation of Dunaliella for beta-carotene production. Appl Microbiol Biotechnol 74:517–523

    Article  CAS  PubMed  Google Scholar 

  • Rohdich F, Hecht S, Gartner K, Adam P, Krieger C, Amslinger S, Arigoni D, Bacher A, Eisenreich W (2002) Studies on the nonmevalonate terpene biosynthetic pathway: metabolic role of IspH (LytB) protein. Proc Natl Acad Sci USA 99:1158–1163

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Rohmer M, Knani M, Simonin P, Sutter B, Sahm H (1993) Isoprenoid biosynthesis in bacteria: a novel pathway for the early steps leading to isopentenyl diphosphate. Biochem J 295(Pt 2):517–524

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ruther A, Misawa N, Boger P, Sandmann G (1997) Production of zeaxanthin in Escherichia coli transformed with different carotenogenic plasmids. Appl Microbiol Biotechnol 48:162–167

    Article  CAS  PubMed  Google Scholar 

  • Sandmann G (2001) Carotenoid biosynthesis and biotechnological application. Arch Biochem Biophys 385:4–12

    Article  CAS  PubMed  Google Scholar 

  • Sandmann G (2002) Combinatorial biosynthesis of carotenoids in a heterologous host: a powerful approach for the biosynthesis of novel structures. Chem Biochem 3:629–635

    CAS  Google Scholar 

  • Sandmann G, Albrecht M, Schnurr G, Knorzer O, Boger P (1999) The biotechnological potential and design of novel carotenoids by gene combination in Escherichia coli. Trends Biotechnol 17:233–237

    Article  CAS  PubMed  Google Scholar 

  • Schmidt-Dannert C, Lee PC, Mijts BN (2006) Creating carotenoid diversity in E. coli cells using combinatorial and directed evolution strategies. Phytochem. Rev. 5:67–74

    Article  CAS  Google Scholar 

  • Sedkova N, Tao L, Rouviere PE, Cheng Q (2005) Diversity of carotenoid synthesis gene clusters from environmental Enterobacteriaceae strains. Appl Environ Microbiol 71:8141–8146

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Shiba Y, Paradise EM, Kirby J, Ro DK, Keasling JD (2007) Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids. Metab Eng 9:160–168

    Article  CAS  PubMed  Google Scholar 

  • Smolke CD, Keasling JD (2002) Effect of gene location, mRNA secondary structures, and RNase sites on expression of two genes in an engineered operon. Biotechnol Bioeng 80:762–776

    Article  CAS  PubMed  Google Scholar 

  • Steinbrenner J, Sandmann G (2006) Transformation of the green alga Haematococcus pluvialis with a phytoene desaturase for accelerated astaxanthin biosynthesis. Appl Environ Microbiol 72:7477–7484

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Tao L, Wilczek J, Odom JM, Cheng Q (2006) Engineering a beta-carotene ketolase for astaxanthin production. Metab Eng 8:523–531

    Article  CAS  PubMed  Google Scholar 

  • Tao L, Sedkova N, Yao H, Ye RW, Sharpe PL, Cheng Q (2007) Expression of bacterial hemoglobin genes to improve astaxanthin production in a methanotrophic bacterium Methylomonas sp. Appl Microbiol Biotechnol 74:625–633

    Article  CAS  PubMed  Google Scholar 

  • Umeno D, Tobias AV, Arnold FH (2005) Diversifying carotenoid biosynthetic pathways by directed evolution. Microbiol Mol Biol Rev 69:51–78

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Vadali RV, Fu Y, Bennett GN, San KY (2005) Enhanced lycopene productivity by manipulation of carbon flow to isopentenyl diphosphate in Escherichia coli. Biotechnol Prog 21:1558–1561

    Article  CAS  PubMed  Google Scholar 

  • Verwaal R, Wang J, Meijnen JP, Visser H, Sandmann G, van den Berg JA, van Ooyen AJ (2007) High-level production of beta-carotene in Saccharomyces cerevisiae by successive transformation with carotenogenic genes from Xanthophyllomyces dendrorhous. Appl Environ Microbiol 73:4342–4350

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Wang GY, Keasling JD (2002) Amplification of HMG–CoA reductase production enhances carotenoid accumulation in Neurospora crassa. Metab Eng 4:193–201

    Article  CAS  PubMed  Google Scholar 

  • Withers ST, Keasling JD (2007) Biosynthesis and engineering of isoprenoid small molecules. Appl Microbiol Biotechnol 73:980–990

    Article  CAS  PubMed  Google Scholar 

  • Yamano S, Ishii T, Nakagawa M, Ikenaga H, Misawa N (1994) Metabolic engineering for production of beta-carotene and lycopene in Saccharomyces cerevisiae. Biosci Biotechnol Biochem 58:1112–1114

    Article  CAS  PubMed  Google Scholar 

  • Ye RW, Stead KJ, Yao H, He H (2006) Mutational and functional analysis of the beta-carotene ketolase involved in the production of canthaxanthin and astaxanthin. Appl Environ Microbiol 72:5829–5837

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ye RW, Yao H, Stead K, Wang T, Tao L, Cheng Q, Sharpe PL, Suh W, Nagel E, Arcilla D, Dragotta D, Miller ES (2007) Construction of the astaxanthin biosynthetic pathway in a methanotrophic bacterium Methylomonas sp. strain 16a. J Ind Microbiol Biotechnol 34:289–299

    Article  CAS  PubMed  Google Scholar 

  • Yoon SH, Lee YM, Kim JE, Lee SH, Lee JH, Kim JY, Jung KH, Shin YC, Keasling JD, Kim SW (2006) Enhanced lycopene production in Escherichia coli engineered to synthesize isopentenyl diphosphate and dimethylallyl diphosphate from mevalonate. Biotechnol Bioeng 94:1025–1032

    Article  CAS  PubMed  Google Scholar 

  • Yoon SH, Kim JE, Lee SH, Park HM, Choi MS, Kim JY, Lee SH, Shin YC, Keasling JD, Kim SW (2007a) Engineering the lycopene synthetic pathway in E. coli by comparison of the carotenoid genes of Pantoea agglomerans and Pantoea ananatis. Appl Microbiol Biotechnol 74:131–139

    Article  CAS  PubMed  Google Scholar 

  • Yoon SH, Park HM, Kim JE, Lee SH, Choi MS, Kim JY, Oh DK, Keasling JD, Kim SW (2007b) Increased beta-carotene production in recombinant Escherichia coli harboring an engineered isoprenoid precursor pathway with mevalonate addition. Biotechnol Prog 23:599–605

    Article  CAS  PubMed  Google Scholar 

  • Yuan LZ, Rouviere PE, Larossa RA, Suh W (2006) Chromosomal promoter replacement of the isoprenoid pathway for enhancing carotenoid production in E. coli. Metab Eng 8:79–90

    Article  CAS  PubMed  Google Scholar 

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Acknowledgment

This work was supported by the BioGreen 21 Program (grant no. 20050401034590) from the Korea Rural Development Administration, and the MOST/KOSEF (Environmental Biotechnology National Core Research Center; grant no. R15–2003–012–02001–0) from the Republic of Korea. Amitabha Das, S. H. Yoon, and S. H. Lee are supported by scholarships from the BrainPool Program and the BK21 Program of Korea.

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Correspondence to Seon-Won Kim.

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Amitabha Das and Sang-Hwal Yoon contributed equally to this work.

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Das, A., Yoon, SH., Lee, SH. et al. An update on microbial carotenoid production: application of recent metabolic engineering tools. Appl Microbiol Biotechnol 77, 505–512 (2007). https://doi.org/10.1007/s00253-007-1206-3

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  • DOI: https://doi.org/10.1007/s00253-007-1206-3

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