Skip to main content
Log in

Mutational biosynthesis—a tool for the generation of structural diversity in the biosynthesis of antibiotics

  • Mini-Review
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Natural products represent an important source of drugs in a number of therapeutic fields, e.g. antiinfectives and cancer therapy. Natural products are considered as biologically validated lead structures, and evolution of compounds with novel or enhanced biological properties is expected from the generation of structural diversity in natural product libraries. However, natural products are often structurally complex, thus precluding reasonable synthetic access for further structure-activity relationship studies. As a consequence, natural product research involves semisynthetic or biotechnological approaches. Among the latter are mutasynthesis (also known as mutational biosynthesis) and precursor-directed biosynthesis, which are based on the cellular uptake and incorporation into complex antibiotics of relatively simple biosynthetic building blocks. This appealing idea, which has been applied almost exclusively to bacteria and fungi as producing organisms, elegantly circumvents labourious total chemical synthesis approaches and exploits the biosynthetic machinery of the microorganism. The recent revitalization of mutasynthesis is based on advancements in both chemical syntheses and molecular biology, which have provided a broader available substrate range combined with the generation of directed biosynthesis mutants. As an important tool in supporting combinatorial biosynthesis, mutasynthesis will further impact the future development of novel secondary metabolite structures.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1a–d
Fig. 2
Fig. 3a,b
Fig. 4a,b
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11

Similar content being viewed by others

References

  • Ankenbauer RG, Staley AL, Rinehart KL, Cox CD (1991) Mutasynthesis of siderophore analogues by Pseudomonas aeruginosa. Proc Natl Acad Sci USA 88:1878–1882

    Google Scholar 

  • Birch AJ (1963) The biosynthesis of antibiotics. Pure Appl Chem 7:527–537

    Google Scholar 

  • Bormann C, Kalmanczhelyi A, Süssmuth R, Jung G (1999) Production of nikkomycins B x and B z by mutasynthesis with genetically engineered Streptomyces tendae Tü901. J Antibiot 52:102–108

    Google Scholar 

  • Cane DE, Kudo F, Kinoshita K, Khosla C (2002) Precursor-directed biosynthesis: biochemical basis of the remarkable selectivity of the erythromycin polyketide synthase towards unsaturated triketides. Chem Biol 9:131–142

    Article  Google Scholar 

  • Cropp TA, Wilson DJ, Reynolds KA (2000) Identification of a cyclohexylcarbonyl CoA biosynthetic gene cluster and application in the production of doramectin. Nat Biotechnol 18:980–983

    Article  Google Scholar 

  • Daum SJ, Lemke JR (1979) Mutational biosynthesis of new antibiotics. Annu Rev Microbiol 33:241–265

    Article  Google Scholar 

  • Delzer J, Fiedler, HP, Müller H, Zähner H, Rathmann R, Ernst K, König WA (1984) New nikkomycins by mutasynthesis and directed fermentation. J Antibiot 37:80–82

    Google Scholar 

  • Dutton CJ, Gibson SP, Goudie AC, Holdom KS, Pacey MS, Ruddock JC (1991) Novel avermectins produced by mutational biosynthesis. J Antibiot 44:357–365

    Google Scholar 

  • Frykman S, Leaf T, Carreras C, Licari P (2001) Precursor-directedproduction of erythromycin analogs by Saccharopolyspora erythraea.Biotechnol Bioeng 76:303–310

    Article  Google Scholar 

  • Galm U, Dessoy MA, Schmidt J, Wessjohann LA, Heide L (2004a) In vitro and in vivo production of new aminocoumarins by a combined biochemical, genetic and synthetic approach. Chem Biol 11:173–183

    Google Scholar 

  • Galm U, Heller S, Shapiro S, Page M, Li S, Heide L (2004b) Antimicrobial and DNA gyrase-inhibitory activities of novel clorobiocin derivatives produced by mutasynthesis. Antimicrob Agents Chemother 48:1307–1312

    Article  Google Scholar 

  • Graziani EI, Ritacco FV, Summers MY, Zabriskie TM, Yu K, Bernan VS, Greenstein M, Carter GT (2003) Novel sulfur-containing rapamycin analogs prepared by precursor-directed biosynthesis. Org Lett 5:2385–2388

    Article  Google Scholar 

  • Hafner EW, Holdom KS, Lee SJE (1988) European Patent 0276103

  • Hojati Z, Milne C, Harvey B, Gordon L, Borg M, Flett F, Wilkinson B, Sidebottom PJ, Rudd BAM, Hayes MA, Smith CP, Micklefield J (2002) Structure, biosynthetic origin, and engineered biosynthesis of calcium-dependent antibiotics from Streptomyces coelicolor. Chem Biol 9:1175–1187

    Article  Google Scholar 

  • Jacobsen JR, Hutchinson CR, Cane DE, Khosla C (1997) Precursor-directed biosynthesis of erythromycin analogs by an engineered polyketide synthase. Science 277:367–369

    Article  Google Scholar 

  • Jacobsen JR, Keatinge-Clay AT, Cane DE, Koshla C (1998) Precursor-directed biosynthesis of 12-ethyl erythromycin. Bioorg Med Chem 6:1171–1177

    Article  Google Scholar 

  • Kalaitzis JA, Izumikawa M, Xiang L, Hertweck C, Moore BS (2003) Mutasynthesis of enterocin and wailupemycin analogues. J Am Chem Soc 125:9290–9291

    Article  Google Scholar 

  • Kawashima A, Seto H, Kato M, Uchida K, Otake N (1985) Preparation of fluorinated antibiotics followed by fluorine 19F-NMR spectroscopy. I. Fluorinated vulagmycins. J Antibiot 38:1499–1505

    Google Scholar 

  • Khaw LE, Böhm GA, Metcalfe S, Staunton J, Leadley PF (1998) Mutational biosynthesis of novel rapamycins by a strain of Streptomyces hygroscopicus NRRL 5491 disrupted in rapL, encoding a putative lysine cyclodesaminase. J Bacteriol 180:809–814

    Google Scholar 

  • Kinoshita K, Williard PG, Khosla C, Cane DE (2001) Precursor-directed biosynthesis of 16-membered macrolides by the erythromycin polyketide sythase. J Am Chem Soc 123:2495–2502

    Article  Google Scholar 

  • Kinoshita K, Koshla C, Cane DE (2003) Precursor-directed biosynthesis: stereospecificity for branched-chain diketides of the β-ketoacyl-ACP synthase domain 2 of 6-deoxyerythronolide B synthase. Helv Chim Acta 86:3889–3907

    Article  Google Scholar 

  • Kitamura S, Kase H, Odakura Y, Iida T, Kunikatsu S, Kiyoshi N (1982) 2-Hydroxysagamycin: a new antibiotic produced by mutational biosynthesis of Micromonospora sagamiensis. J Antibiot 35:94–97

    Google Scholar 

  • Leaf T, Cadapan L, Carreras C, Regentin R, Ou S, Woo E, Ashley G, Licari P (2000) Precursor-directed biosythesis of 6-deoxyerythronolide B analogs in Streptomyces coelicolor: understanding precursor effects. Biotechnol Prog 16:553–556

    Article  Google Scholar 

  • Marsden AFA, Wilkinson B, Cortes J, Dunster NJ, Staunton J, Leadley PF (1998) Engineering broader specificity into an antibiotic-producing polyketide synthase. Science 279:199–202

    Article  Google Scholar 

  • McArthur HAI (1998) A novel avermectin, doramectin—a successful application of mutasynthesis. In: Hutchinson CR, McAlpine J (eds) Developments in industrial microbiology—BMP ‘97. Fairfax, Virginia, pp 43–48

    Google Scholar 

  • Pfeifer V, Nicholson GJ, Ries J, Recktenwald J, Schefer AB, Shawky RM, Schröder J, Wohlleben W, Pelzer S (2001) A polyketide synthase in glycopeptide biosynthesis: the biosynthesis of the non-proteinogenic amino acid (S)-3,5-dihydroxyphenylglycine. J Biol Chem 276:38370–38377

    Article  Google Scholar 

  • Pieper R, Luo G, Cane DE, Koshla C (1995a) Remarkably broad substrate specificity of a modular polyketide synthase in a cell-free system. J Am Chem Soc 117:11373–11374

    Google Scholar 

  • Pieper R, Luo G, Cane DE, Koshla C (1995b) Rational design of aromatic polyketide natural products by recombinant assembly of enzymatic subunits. Nature 378:549–554

    Google Scholar 

  • Puk O, Huber P, Bischoff D, Recktenwald J, Jung G, Süssmuth RD, van Pee KH, Wohlleben W, Pelzer S (2002) Glycopeptide biosynthesis in Amycolatopsis mediterranei DSM5908. Function of a halogenase and a haloperoxidase/perhydrolase. Chem Biol 9:225–235

    Article  Google Scholar 

  • Rinehart KL (1977) Mutasynthesis of new antibiotics. Pure Appl Chem 49:1361–1384

    Google Scholar 

  • Shier WT, Rinehart KL, Gottlieb D (1969) Preparation of four new antibiotics from a mutant of Streptomyces fradiae. Proc Natl Acad Sci USA 63:198–204

    Google Scholar 

  • Süssmuth RD, Wohlleben W (2004) The biosynthesis of glycopeptide antibiotics—a model for complex, non-ribosomally synthesized peptidic secondary metabolites. Appl Microbiol Biotechnol 63:344–350

    Google Scholar 

  • Takeda K, Kinumaki A, Furumai T, Yamaguchi T, Ohshima S, Ito Y (1978) Mutational biosynthesis of butirosin analogs. J Antibiot 31:247–249

    Google Scholar 

  • Thiericke R, Rohr J (1993) Biological variation of microbial metabolites by precursor-directed biosynthesis. Nat Prod Rep 10:265–289

    Article  Google Scholar 

  • Toscano L, Fioriello G, Spagnoli R, Cappelletti L, Zanuso G (1983) New fluorinated erythromycins obtained by mutasynthesis. J Antibiot 36:1439–1450

    Google Scholar 

  • Weissman KJ, Bycroft M, Cutter AL, Hanefeld U, Frost EJ, Timoney MC, Harris R, Handa S, Roddis M, Staunton J, Leadley PF (1998) Evaluating precursor-directed biosynthesis towards novel erythromycins through in vitro studies on a bimodular polyketide synthase. Chem Biol 5:743–754

    Article  Google Scholar 

  • Weist S, Bister B, Puk O, Bischoff D, Pelzer S, Nicholson GJ, Wohlleben W, Jung G, Suessmuth RD (2002) Fluorobalhimycin—a new chapter in glycopeptide antibiotic research. Angew Chem 114:3531–3534; Angew Chem Int Ed 41:3383–3385

    Article  Google Scholar 

  • Weist S, Kittel C, Bischoff D, Bister B, Pfeifer V, Nicholson GJ, Wohlleben W, Süssmuth RD (2004) Mutasynthesis of glycopeptide antibiotics: variations of vancomycin’s AB-ring amino acid 3,5-dihydroxyphenylglycine. J Am Chem Soc 126:5942–5943

    Article  Google Scholar 

Download references

Acknowledgements

This work was supported by a grant of the European Union (COMBIG-TOP, LSHG-CT-2003-503491), the Deutsche Forschungsgemeinschaft (DFG, SU 239/3-3) and by an Emmy-Noether-Fellowship for young investigators of the DFG (SU 239/2-1).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to R. D. Süssmuth.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Weist, S., Süssmuth, R.D. Mutational biosynthesis—a tool for the generation of structural diversity in the biosynthesis of antibiotics. Appl Microbiol Biotechnol 68, 141–150 (2005). https://doi.org/10.1007/s00253-005-1891-8

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-005-1891-8

Keywords

Navigation