Abstract
The Clostridium thermocellum cellobiose and cellodextrin phosphorylases (glucosyl transferases) in the cell extract were used to synthesize radiolabeled cellodextrins with a degree of polymerization (DP=2–6) from nonradioactive glucose-1-phosphate and radioactive glucose. Chain lengths of synthesized cellodextrin were controlled by the absence or presence of dithiothreitol and by reaction conditions. All cellodextrins have the sole radioactive glucose unit located at the reducing ends. Mixed cellodextrins (G2–G6) were separated efficiently by size-exclusion chromatography or less efficiently by thin-layer chromatography. A new rapid sampling device was developed using disposable syringes containing an ultracold methanol-quenching buffer. It was simple, less costly, and especially convenient for anaerobic fermentation. After an impulse feed of radiolabeled cellobiose, the intracellular sugar levels were measured after a series of operations—sampling, extracting, concentrating, separating, and reading. Results showed that the largest amount of radioactivity was cellobiose with lesser amounts of glucose, cellotriose, and cellotetraose, and an average DP of intracellular cellodextrins was ca. 2.
Similar content being viewed by others
References
Alexander JK (1972a) Cellobiose phosphorylase from Clostridium thermocellum. Methods Enzymol 130:944–948
Alexander JK (1972b) Cellodextrin phosphorylase from Clostridium thermocellum. Methods Enzymol 130:948–953
Bailey JE (1991) Toward a science of metabolic engineering. Science 252:1668–1675
Buziol S, Bashir I, Baumeister A, Claassen W, Noisommit-Rizzi N, Mailinger W, Reuss M (2002) New bioreactor-coupled rapid stopped-flow sampling technique for measurements of metabolite dynamics on a subsecond time scale. Biotechnol Bioeng 80(6):632–636
Crout DH, Vic G (1998) Glycosidases and glycosyl transferases in glycoside and oligosaccharide synthesis. Curr Opin Chem Biol 2:98–111
Elferink MGL, Albers S-V, Konings WN, Driessen AJM (2001) Sugar transport in Sulfolobus solfataricus is mediated by two families of binding protein-dependent ABC transporters. Mol Microbiol 39:1494–1503
Gonzalez B, Francois J, Renaud M (1997) A rapid and reliable method for metabolite extraction in yeast using boiling buffered ethanol. Yeast 13:1347–1356
Hausler RE, Fischer KL, Flugge U-I (2000) Determination of low-abundant metabolites in plant extracts by NAD(P)H fluorescence with a microtiter plate reader. Anal Biochem 281:1–8
Koivula A, Ruohonen L, Wohlfahrt G, Reinikainen T, Teeri TT, Piens K, Claeyssens M, Weber M, Vasella A, Becker D et al (2002) The active site of cellobiohydrolase Cel6A from Trichoderma reesei: the roles of aspartic acids D221 and D175. J Am Chem Soc 124:10015–10024
Koning SM, Elferink MGL, Konings WN, Driessen AJM (2001) Cellobiose uptake in the hyperthermophilic Archaeon Pyrococcus furiosus is mediated by an inducible, high-affinity ABC transporter. J Bacteriol 183:4979–4984
Lange HC, Eman M, van Zuijlen G, Visser D, van Dam JC, Frank J, de Mattos MJ, Heijnen JJ (2001) Improved rapid sampling for in vivo kinetics of intracellular metabolites in Saccharomyces cerevisiae. Biotechnol Bioeng 75:406–415
Lee SY, Lee D-Y, Kim TY (2005) Systems biotechnology for strain improvement. Trends Biotechnol 23:349–358
Lynd LR, van Zyl WH, McBride JE, Laser M (2005) Consolidated bioprocessing of cellulosic biomass: an update. Curr Opin Biotechnol 16:577–583
Mashego MR, van Gulik WM, Vinke JL, Heijnen JJ (2003) Critical evaluation of sampling techniques for residual glucose determination in carbon-limited chemostat culture of Saccharomyces cerevisiae. Biotechnol Bioeng 83:395–399
Ng TK, Zeikus JG (1986) Synthesis of [14C] cellobiose with Clostridium thermocellum: cellobiose phosphorylase. Appl Environ Microbiol 52:902–904
Oliver DJ, Nikolau B, Wurtele ES (2002) Functional genomics: high-throughput mRNA, protein, and metabolite analyses. Metab Eng 4:98–106
Pereira AN, Mobedshahi M, Ladisch MR (1988) Preparation of cellodextrins. Methods Enzymol 160:26–43
Perugino G, Trincone A, Rossi M, Moracci M (2004) Oligosaccharide synthesis by glycosynthases. Trends Biotechnol 22:31–37
Schmid G, Bisell M, Wandrey C (1988) Preparation of cellodextrins and isolation of oligomeric side components and their characterization. Anal Biochem 175:573–583
Shi Y, Weimer PJ (1996) Utilization of individual cellodextrins by three predominant ruminal cellulolytic bacteria. Appl Environ Microbiol 62:1084–1088
Soga T, Ueno Y, Naraoka H, Ohashi Y, Tomita M, Nishioka T (2002) Simultaneous determination of anionic intermediates for Bacillus subtilis metabolic pathways by capillary electrophoresis electrospray ionization mass spectrometry. Anal Chem 74:2233–2239
Spiridonov NA, Wilson DB (1998) Regulation of biosynthesis of individual cellulases in Thermomonospora fusca. J Bacteriol 180:3549–3552
Strobel HJ, Caldwell FC, Dawson KA (1995) Carbohydrate transport by the anaerobic thermophilic Clostridium thermocellum LQRI. Appl Environ Microbiol 61:4012–4015
Theobald U, Mailinger W, Baltes M, Rizzi M, Reuss M (1997) In vivo analysis of metabolic dynamics in Saccharomyces cerevisiae: I. Experimental observations. Biotechnol Bioeng 55:305–316
Visser D, van Zuylen GA, van Dam JC, Oudshoorn A, Eman MR, Ras C, van Gulik WM, Frank J, van Dedem GW, Heijnen JJ (2002) Rapid sampling for analysis of in vivo kinetics using the BioScope: a system for continuous-pulse experiments. Biotechnol Bioeng 79(6):674–681
Zhang Y-H, Lynd LR (2003a) Quantification of cell and cellulase mass concentrations during anaerobic cellulose fermentation: development of an ELISA-based method with application to Clostridium thermocellum batch cultures. Anal Chem 75:219–227
Zhang Y-HP, Lynd LR (2003b) Cellodextrin preparation by mixed-acid hydrolysis and chromatographic separation. Anal Biochem 322:225–232
Zhang Y-HP, Lynd LR (2004a) Kinetics and relative importance of phosphorolytic and hydrolytic cleavage of cellodextrins and cellobiose in cell extracts of Clostridium thermocellum. Appl Environ Microbiol 70:1563–1569
Zhang Y-HP, Lynd LR (2004b) Toward an aggregated understanding of enzymatic hydrolysis of cellulose: noncomplexed cellulase systems. Biotechnol Bioeng 88:797–824
Zhang Y-HP, Lynd LR (2005a) Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum. J Bacteriol 187:99–106
Zhang Y-HP, Lynd LR (2005b) Determination of the number-average degree of polymerization of cellodextrins and cellulose with application to enzymatic hydrolysis. Biomacromolecules 6:1510–1515
Zhang Y-HP, Lynd LR (2005c) Cellulose utilization by Clostridium thermocellum: bioenergetics and hydrolysis product assimilation. Proc Natl Acad Sci U S A 102:7321–7325
Zverlov VV, Schantz N, Schwarz WH (2005) A major new component in the cellulosome of Clostridium thermocellum is a processive endo-beta-1,4-glucanase producing cellotetraose. FEMS Microbiol Lett 249(2):353–358
Acknowledgements
Author (YHPZ) thanks the Biological Systems Engineering Department at Virginia Polytechnic Institute and State University. This work was also supported partially by grants DE-FG02-02ER15350 (to LRL and YHPZ) from the Department of Energy and 60NANB1D0064 (to LRL) from the National Institute of Standards and Technology.
Author information
Authors and Affiliations
Corresponding author
Rights and permissions
About this article
Cite this article
Zhang, Y.H.P., Lynd, L.R. Biosynthesis of radiolabeled cellodextrins by the Clostridium thermocellum cellobiose and cellodextrin phosphorylases for measurement of intracellular sugars. Appl Microbiol Biotechnol 70, 123–129 (2006). https://doi.org/10.1007/s00253-005-0278-1
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00253-005-0278-1