Skip to main content
Log in

Characterization of two novel lipase genes isolated directly from environmental sample

  • Biotechnologically Relevant Enzymes and Proteins
  • Published:
Applied Microbiology and Biotechnology Aims and scope Submit manuscript

Abstract

Two novel lipase genes (lipJ02, lipJ03) were isolated directly from environmental DNA via genome-walking method. Lipase gene lipJ02 contained an open reading frame (ORF) of 1,425 bp and encoded a 474-amino acids lipase protein, while lipase gene lipJ03 contained an ORF of 1,413 bp and encoded a 470-amino acids lipase protein. The lipase genes were cloned into expression vector pPIC9K and successfully integrated into a heterologous fungal host, Pichia pastoris KM71, and the recombinant P. pastoris were screened via a high-throughput method. The recombinants were induced by methanol to secrete active lipases into cultural medium. The recombinant lipases were also purified and characterized. The optimum temperature for the purified lipase LipJ02 and LipJ03 was 30 and 35°C, respectively, at pH 8.0. They exhibited similar thermostability, but LipJ02 exhibited better pH stability than LipJ03.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3

Similar content being viewed by others

References

  • Abelson JN, Simon MI, Deutscher MP (1990) Guide to protein purification. In: Methods in enzymology, vol. 182. Academic Press, San Diego, CA

    Google Scholar 

  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Amada K, Haruki M, Imanaka T, Morikawa M, Kanaya S (2000) Overproduction in Escherichia coli, purification and characterization of a family I.3 lipase from Pseudomonas sp. MIS38. Biochim Biophys Acta 1478(2):201–210

    Article  CAS  PubMed  Google Scholar 

  • Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143–169

    CAS  PubMed  PubMed Central  Google Scholar 

  • Beven CA, Dieckelmann M, Beacham IR (2001) A strain of Pseudomonas fluorescens with two lipase-encoding genes, one of which possibly encodes cytoplasmic lipolytic activity. J Appl Microbiol 90(6):979–987

    Article  CAS  PubMed  Google Scholar 

  • Chung GH, Lee YP, Jeohn GH, Yoo OJ, Rhee JS (1991) Cloning and nucleotide sequence of thermostable lipase gene from Pseudomonas fluorescens. Agric Biol Chem 55:2359–2365

    CAS  PubMed  Google Scholar 

  • Cottrell MT, Moore JA, Kirchman DL (1999) Chitinases from uncultured marine microorganisms. Appl Environ Microbiol 65:2553–2557

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Cottrell MT, Wood D, Yu L, Kirchman DL (2000) Selected chitinase genes in cultured and uncultured marine bacteria in the α- and γ- subclasses of the proteobacteria. Appl Environ Microbiol 66(3):1195–1201

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Dharmsthiti S, Kuhasuntisuk B (1999) Lipase from Pseudomonas aeruginosa LP602: biochemical properties and application for wastewater treatment. J Ind Microbiol Biotech 21:75–80

    Article  Google Scholar 

  • Fojan P, Jonson PH, Petersen MTN, Petersen SB (2000) What distinguishes an esterase from a lipase: a novel structural approach. Biochimie 82:1033–1041

    Article  CAS  PubMed  Google Scholar 

  • Henne A, Daniel R, Schmitz RA, Gottschalk G (1999) Construction of environmental DNA libraries in Escherichia coli and screening for the presence of genes conferring utilization of 4-hydroxybutyrate. Appl Environ Microbiol 65:3901–3907

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Henne A, Schmitz RA, Bömeke M, Gottschalk G, Daniel R (2000) Screening of environmental DNA libraries for the presence of genes conferring lipolytic activity on Escherichia coli. Appl Environ Microbiol 66:3113–3116

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Invitrogen. A manual of methods for expression of recombinant proteins in Pichia pastoris. Invitrogen Corporation. Catalog No. K1710-01

  • Jaeger K-E, Dijstra BW, Reetz MT (1999) Bacterial biocatalyst: molecular biology, three-dimensional structures, and biotechnological applications of lipases. Annu Rev Microbiol 56:315–351

    Article  Google Scholar 

  • Kojima Y, Kobayashi M, Shimizu S (2003) A novel lipase from Pseudomonas fluorescens HU380: gene cloning, overproduction, renaturation–activation, two-step purification, and characterization. J Biosci Bioeng 96:242–249

    Article  CAS  PubMed  Google Scholar 

  • Kouker G, Jaeger K-E (1987) Specific and sensitive plate assay for bacterial lipase. Appl Environ Microbiol 53:211–213

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Martinez A, Soberon-Chavez G (2001) Characterization of the lipA gene encoding the major lipase from Pseudomonas aeruginosa strain IGB83. Appl Microbiol Biotechnol 56:731–735

    Article  CAS  PubMed  Google Scholar 

  • Matsumoto T, Ito M, Fukuda H, Kondo A (2004) Enantioselective transesterification using lipase-displaying yeast whole-cell biocatalyst. Appl Microbiol Biotechnol 64:481–485

    Article  CAS  PubMed  Google Scholar 

  • Maurich V, Zacchigna M (1991) p-Nitrophenyl laurate: a substrate for the high-performance liquid chromatographic determination of lipase activity. J Chromatogr 566:453–459

    Article  CAS  PubMed  Google Scholar 

  • Morris DD, Gibbs MD, Chin CWJ, Koh M-H, Wong KKY, Allison RW, Nelson PJ, Bergquist PL (1998) Cloning of the xynB gene from Dictyoglomus thermophilum Rt46B.1 and action of the gene product on Kraft pulp. Appl Environ Microbiol 64(5):1759–1765

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Oh B, Kim H, Lee J, Kang S, Oh T (1999) Staphylococcus haemolyticus lipase: biochemical properties, substrate specificity and gene cloning. FEMS Microbiol Lett 179(2):385–392

    Article  CAS  PubMed  Google Scholar 

  • Prim N, Blanco A, Martı'nez J, Pastor FIJ, Diaz P (2000) estA, a gene coding for a cell-bound esterase from Paenibacillus sp. BP-23, is a new member of the bacterial subclass of type B carboxylesterases. Res Microbiol 151:303–312

    Article  CAS  PubMed  Google Scholar 

  • Rahman RNZA, Chin JH, Salleh AB (2003) Cloning and expression of a novel lipase gene from Bacillus sphaericus 205y. Mol Gen Genomics 269:252–260

    Article  CAS  Google Scholar 

  • Rose TM, Schultz ER, Henikoff JG, Pietrokovski S, Henikoff S (1998) Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. Nucleic Acids Res 26:1628–1635

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Ruiz C, Javier Pastor FI, Diaz P (2003) Isolation and characterization of Bacillus sp. BP-6 LipA, a ubiquitous lipase among mesophilic bacillus species. Lett Appl Microbiol 37:354–359

    Article  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Seow K-T, Meurer G, Gerlitz M, Wendt-Pienkowski E, Hutchinson C (1997) A study of iterative type II polyketide synthases, using bacterial genes cloned from soil DNA: a means to access and use genes from uncultured microorganisms. J Bacteriol 179:7360–7368

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  • Stoscheck CM (1990) Quantization of protein. Method Enzymol 182:50–69

    Article  CAS  Google Scholar 

  • Zhou JM, Bruns MA, Tiedje JM (1996) DNA recovery from soils of diverse composition. Appl Environ Microbiol 62:316–322

    Article  CAS  PubMed  PubMed Central  Google Scholar 

Download references

Acknowledgements

The work was supported by the grant from the Ministry of Science and Technology, P.R. China (project No. 2002CCA400) and the grant from the Ministry of Education, P.R. China (project No. 20020251004).

We wish to thank Prof. Lixing Ma (Hubei University, P. R. China) for excellent technical assistance.

Author information

Authors and Affiliations

Authors

Corresponding authors

Correspondence to Yushu Ma or Dongzhi Wei.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jiang, Z., Wang, H., Ma, Y. et al. Characterization of two novel lipase genes isolated directly from environmental sample. Appl Microbiol Biotechnol 70, 327–332 (2006). https://doi.org/10.1007/s00253-005-0065-z

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00253-005-0065-z

Keywords

Navigation