Skip to main content
Log in

Culturable Microbial Diversity and the Impact of Tourism in Kartchner Caverns, Arizona

  • Published:
Microbial Ecology Aims and scope Submit manuscript

Abstract

Kartchner Caverns in Benson, AZ, was opened for tourism in 1999 after a careful development protocol that was designed to maintain predevelopment conditions. As a part of an ongoing effort to determine the impact of humans on this limestone cave, samples were collected from cave rock surfaces along the cave trail traveled daily by tour groups (200,000 visitors year–1) and compared to samples taken from areas designated as having medium (30–40 visitors year–1) and low (2–3 visitors year–1) levels of human exposure. Samples were also taken from fiberglass moldings installed during cave development. Culturable bacteria were recovered from these samples and 90 unique isolates were identified by using 16S rRNA polymerase chain reaction and sequencing. Diversity generally decreased as human impact increased leading to the isolation of 32, 27, and 22 strains from the low, medium, and high impact areas, respectively. The degree of human impact was also reflected in the phylogeny of the isolates recovered. Although most isolates fell into one of three phyla: Actinobacteria, Firmicutes, or Proteobacteria, the Proteobacteria were most abundant along the cave trail (77% of the isolates), while Firmicutes predominated in the low (66%) and medium (52%) impact areas. Although the abundance of Proteobacteria along the cave trail seems to include microbes of environmental rather than of anthropogenic origin, it is likely that their presence is a consequence of increased organic matter availability due to lint and other organics brought in by cave visitors. Monitoring of the cave is still in progress to determine whether these bacterial community changes may impact the future development of cave formations.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Figure 1
Figure 2
Figure 3

Similar content being viewed by others

References

  1. Azeredo, J, Oliveira, R (2000) The role of exopolymers in the attachment of Sphingomonas paucimobilis. Biofouling 16: 59–67

    Article  CAS  Google Scholar 

  2. Bodour, AA, Drees, KP, Maier, RM (2003) Distribution of biosurfactant-producing bacteria in undisturbed and contaminated arid southwestern soils. Appl Environ Microbiol 69: 3280–3287

    Article  PubMed  CAS  Google Scholar 

  3. Buecher, RH (1999) Microclimate study of Kartchner Caverns, Arizona. J Caves Karst Stud 61(2): 108–120

    Google Scholar 

  4. Cacchio, P, Contento, R, Ercole, C, Cappuccio, G, Martinez, MP, Lepidi, A (2004) Involvement of microorganisms in the formation of carbonate speleothems in the Cervo Cave (L'Aquila-Italy). Geomicrobiol J 21: 497–509

    Article  CAS  Google Scholar 

  5. Chelius, MK, Moore, JC (2004) Molecular phylogenetic analysis of Archaea and bacteria in Wind Cave, South Dakota. Geomicrobiol J 21: 123–124

    Article  CAS  Google Scholar 

  6. Chelius, MK, Triplett, EW (2000) Dyadobacter fermentens gen. nov., sp. nov., a novel Gram-negative bacterium isolated from surface-sterilized Zea mays stems. Int J System Evol Microbiol 50: 751–758

    CAS  Google Scholar 

  7. Gonzalez, I, Laiz, L, Hermosin B, Caballero, B, Incerti, C, Saiz-Jiminez, C (1999) Bacteria isolated from rock art paintings: the case of Atlanterra shelter (south Spain). J Microbiol Methods 36: 123–127

    Article  PubMed  CAS  Google Scholar 

  8. Groth, I, Vetterman, R, Schuetze, B, Schumann, P, Saiz-Jiminez, C (1999) Actinomycetes in karstic caves of northern Spain (Altamira and Tito Bustillo). J Microbiol Methods 36: 115–122

    Article  PubMed  CAS  Google Scholar 

  9. Gurtner, C, Heyrman, J, Pinar, G, Lubitz, W, Swings, J, Rolleke, S (2000) Comparative analyses of the bacterial diversity on two different biodeteriorated wall paintings by DGGE and 16S rDNA sequence analysis. Int Biodeter Biodegrad 46: 229–239

    Article  CAS  Google Scholar 

  10. Hill, C, Forti, P (1997) Cave Minerals of the World, 2nd ed. National Speleological Society, Huntsville, AL

    Google Scholar 

  11. Hill, CA (1999) Mineralogy of Kartchner Caverns, Arizona. J Cave Karst Stud 61: 73–78

    CAS  Google Scholar 

  12. Hiraishi, A, Furuhata, K, Matsumoto, A, Koike, KA, Fukuyama, M, Tabuchi, K (1995) Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments. Appl Environ Microbiol 61: 2099–2107

    PubMed  CAS  Google Scholar 

  13. Hunter, A (2004) Persistent coliform contamination in Lechuguilla Cave pools. J Cave Karst Stud 66: 102–110

    Google Scholar 

  14. Jablonsky, P, Kraemer, S, Yett, B (1993) Lint in caves. In: Pate, DL (Ed.) Proc. 1993 National Cave Management Symposium, Carlsbad, NM, American Cave Conservation Association, Horse Cave, Kentucky, pp 73–81

    Google Scholar 

  15. Lane, DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt, E, Goodfellow, M (Eds.) Nucleic Acid Techniques in Bacterial Systematics. Wiley, New York, NY, pp 115–175

    Google Scholar 

  16. Murray, RGE, Doetsch, RN, Robinow, CF (1994) Determinitive and cytological light microscopy. In: Gerhardt, P (Ed.) Methods for General and Molecular Bacteriology. American Society for Microbiology, Washington, DC, pp 31–32

    Google Scholar 

  17. Nohynek, LJ, Nurmiaho-Lassila, EL, Suhonen, EL, Busse, HJ, Mohammadi, M, Hantula, J, Rainey, F, Salkinoja-Salonen, MS (1996) Description of chlorophenol-degrading Pseudomonas sp. strains KF1T, KF3, and NKF1 as a new species of the genus Sphingomonas, Sphingomonas subarctica sp. nov. Int J Syst Bacteriol 46: 1042–1055

    Article  PubMed  CAS  Google Scholar 

  18. Northup, DE, Barns, SM, Yu, LE, Spilde, MN, Schelble, RT, Dano, KE, Crossey LJ, Connolly, CA, Boston, PJ, Natvig, DO, Dahm, CN (2003) Diverse microbial communities inhabiting ferromanganese deposits in Lechuguilla and Spider Caves. Environ Microbiol 5: 1071–1086

    Article  PubMed  Google Scholar 

  19. Palleroni, NJ (1992) Introduction to the family Pseudomonadaceae. In: Balows, A, Trüper, HG, Dworkin, M, Harder, W, Schliefer, K-H. (Eds.) The Prokaryotes, 2nd ed, Vol III. Springer Verlag, NY, pp 3071–3103

    Google Scholar 

  20. Rolleke S, Muyzer G, Wawer, C, Wanner, G, Lubitz, W (1996) Identification of bacteria in a biodegraded wall painting by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA. Appl Environ Microbiol 62: 2059–2065

    PubMed  CAS  Google Scholar 

  21. Schabereiter-Gurtner, C, Saiz-Jiminez, C, Piñar G, Lubitz, W, Rölleke, S (2002) Phylogenetic 16S rRNA analysis reveals the presence of complex and partly unknown bacterial communities in the Tito Bustillo cave, Spain, and on its Paleolithic paintings. Environ Microbiol 4: 392–400

    Article  PubMed  CAS  Google Scholar 

  22. Schabereiter-Gurtner, C, Saiz-Jiminez, C, Piñar, G, Lubitz, W, Rölleke, S (2004) Phylogenetic diversity of bacteria associated with Paleolithic paintings and surrounding rock walls in two Spanish caves (Llonic and La Garma). FEMS Microbiol Ecol 47: 235–247

    Article  CAS  PubMed  Google Scholar 

  23. Slepecky, RA, Hemphill, HE (1992) The genus Bacillus—nonmedical. In: Balows, A, Trüper, HG, Dworkin, M, Harder, W, Schliefer, K-H (Eds.) The Prokaryotes, 2nd ed, Vol III. Springer Verlag, NY, p 1663

    Google Scholar 

  24. Toomey, RS III, Nolan, G (2005) Environmental change at Kartchner Caverns: trying to separate natural and anthropogenic changes. In: Proceed Biodiversity and Management of the Madrean Archipelago II: Connecting Mountain Islands and Desert Seas. USDA-Forest Service, RMRS-P 36: 264–270

  25. Tufts, R, Tenen, G (1999) Discovery and history of Kartchner caverns, Arizona. J Cave Karst Stud 61: 44–48

    Google Scholar 

  26. Versalovic, J, Koeuth T, Lupski, JR (1991) Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res 19: 6823–6831

    Article  PubMed  CAS  Google Scholar 

  27. Welbourn, W (1999) Invertebrate cave fauna of Kartchner Caverns, Kartchner Caverns, Arizona. J Cave Karst Stud 61: 93–101

    Google Scholar 

Download references

Acknowledgments

This work was supported in part by grants MCB-0604300 and CHE-013237 from the National Science Foundation and in part by a grant from the Arizona State Parks Board.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Raina M. Maier.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Ikner, L.A., Toomey, R.S., Nolan, G. et al. Culturable Microbial Diversity and the Impact of Tourism in Kartchner Caverns, Arizona. Microb Ecol 53, 30–42 (2007). https://doi.org/10.1007/s00248-006-9135-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00248-006-9135-8

Keywords

Navigation