Abstract
We have assessed ectomycorrhizal fungi colonizing Norway spruce (Picea abies L.) seedlings in nine forest nurseries using restriction fragment length polymorphism (RFLP) and sequencing analyses of the internal transcribed spacers (ITS1-5.8S-ITS2) amplicons. Restriction analysis of the amplified DNA fragments with HinfI, MboI, and TaqI enzymes allowed the definition of 17 RFLP genotypes; five of them could be unambiguously assigned to Thelephora terrestris, Hebeloma longicaudum, H. crustuliniforme, Tricharina ochroleuca, and Cenococcum geophilum species by comparison with the sporocarp RFLP-pattern database. The remaining genotypes have been sequenced and compared with sequences deposited in the GenBank database. The phylogenetic analysis of resulting sequences and their identified matches indicated that isolated genotypes have formed seven clades. The ascomycetes were predominant: we have determined eight species—Wilcoxina mikolae, Phialophora finlandia, Tuber sp., Cenococcum geophilum, Tricharina ochroleuca, Pulvinula constellatio, and two unidentified ascomycetes—whereas the basidiomycetes were less common (four species denoted: Amphinema byssoides, Hebeloma crustuliniforme, H. longicaudum, and Thelephora terrestris). Wilcoxina mikolae and Phialophora finlandia were the most frequent fungi. Analysis of variance revealed that ascomycetes abundance was higher in nurseries that used organic fertilizer.
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References
Agerer, R (1987–1998) Colour Atlas of Ectomycorrhizae. 1st to 11th ed. Einhorn-Verlag Eduard Dietenberger, SchwäbischGmünd, Germany
Altschul, SF, Madden, TL, Schäffer, AA, Zhang, J, Zhang, Z, Miller, W, Lipman, DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389–3402
Amicucci, A, Zambonelli, A, Guidi, C, Stocchi, V (2001) Morphological and molecular characterization of Pulvinula constellatio ectomycorrhizae. FEMS Microbiol Lett 194: 121–125
Dahlberg, A, Jonsson, L, Nylund, JE (1997) Species diversity and distribution of biomass above and belowground among ectomycorrhizal fungi in an old Norway spruce forest in south Sweden. Can J Bot 75: 1323–1335
Danielson, RM, Visser, S (1990) The mycorrhizal and nodulation status of container-grown trees and shrubs reared in commercial nurseries. Can J For Res 20: 609–614
De la Bastide, PY, Kropp, BR, Piché, Y (1995) Mechanisms for the development of genetically variable mycorrhizal mycelia in the ectomycorrhizal fungus Laccaria bicolor. Appl Environ Microbiol 61: 309–316
De Roman, M, Claveria, V, De Miguel, AM (2005) A revision of the descriptions of ectomycorrhizas published since 1961. Mycol Res 109: 1063–1110
Doyle, J (1991) DNA protocols for plants. In: Hewitt, GM, Johnston, AWB, Young, JPW (Eds.) Molecular Techniques in Taxonomy, Springer-Verlag, Berlin, pp 283–293
Egli, S, Amiet, R, Zollinger, M, Schneider, B (1993) Characterization of Picea abies ectomycorrhizas: discrepancy between classification according to macroscopic versus microscopic features. Trees 7: 123–129
Flynn, D, Newton, AC, Ingleby, K (1998) Ectomycorrhizal colonization of Sitka spruce [Picea sitchensis (Bong.) Carr] seedlings in a Scottish plantation forest. Mycorrhiza 7: 313–331
Frey, SD, Elliott, ET, Paustian, K (1999) Bacterial and fungal abundance and biomass in conventional and no-tillage agroecosystems along two climatic gradients. Soil Biol Biochem 31: 573–585
Gagnon, J, Laglois, CG (1988) Growth and ectomycorrhiza formation of containerized black spruce seedlings as affected by nitrogen fertilization, inoculum type, and symbiont. Can J For Res 18: 922–929
Gardes, M, Bruns, TD (1993) ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113–118
Gardes, M, Mueller, GM, Fortin, JA, Kropp, BR (1991) Mitochondrial DNA polymorphism in four Laccaria species: L. bicolor, L. laccata, L. proxima and L. amethystina. Mycol Res 95: 206–216
Grünig, CR, Sieber, TN (2005) Molecular and phenotypic description of the widespread root symbiont Acephala applanata gen. et sp. nov., formerly known as dark-septate endophyte type 1. Mycologia 97: 628–640
Horton, TR (2002) Molecular approaches to ectomycorrhizal diversity studies: variation in ITS at a local scale. Plant Soil 244: 29–39
Hunt, G (1992) Effects of mycorrhizal fungi on quality of nursery stock and plantation performance in the southern interior of British Columbia. FRDA Report 185. Forestry Canada and the British Columbia Ministry Forests
Ingleby, K, Mason, PA, Last, FT, Fleming, LV (1990) Identification of ectomycorrhizas. Institute of Terrestrial Ecology Research Publication No. 5. HMSO, London, UK
Iwański, M, Rudawska, M, Leski, T (2006) Mycorrhizal associations of nursery grown Scots pine (Pinus sylvestris L.) seedlings in Poland. Ann For Sci (in press)
Jonsson, L, Dahlberg, A, Brandrud, TE (2000) Spatiotemporal distribution of an ectomycorrhizal community in an oligotrophic Swedish Picea abies forest subjected to experimental nitrogen addition: above- and below-ground views. For Ecol Manag 132: 143–156
Kåren, O, Nylund, JE (1996) Effects on N-free fertilization on ectomycorrhiza community structure in Norway spruce stands in southern Sweden. Plant Soil 181: 295–305
Kernaghan, G, Sigler, L, Khasa, D (2003) Mycorrhizal and root endophytic fungi of containerized Picea glauca seedlings assessed by rDNA sequence analysis. Microb Ecol 45: 128–136
Khasa, PD, Sigler, L, Chakravarty, P, Dancik, BP, Erickson, L, Mc Curdy, D (2001) Effect of fertilization on growth and ectomycorrhizal development of container-grown and bare-root nursery conifer seedlings. New For 22: 179–197
Kumar, S, Tamura, K, Jakobsen, IB, Nei, M (2001) MEGA2: Molecular Evolutionary Genetics Analysis Software. Arizona State University, Tempe, AZ, USA
Ławrynowicz, M (1988) Grzyby (Mycota), vol. XVIII. PWN, Warszawa–Kraków
Le Tacon, F, Bouchard, D, Perrin, R (1986a) Effects of soil fumigation and inoculation with pure culture of Hebeloma cylindrosporum on survival, growth, and ectomycorrhizal development of Norway spruce and Douglas fir seedlings. Eur J For Pathol 16: 257–265
Le Tacon, F, Buchard, D (1986b) Effects on different ectomycorrhizal fungi on growth of larch, Douglas fir, Scots pine and Norway spruce seedlings in fumigated nursery soil. Acta Oecol 7: 389–402
Lenart, GA (2003) Forests in Poland, p 48
Lindahl, B, Stenlid, J, Olsson, S, Finlay, R (1999) Translocation of P-32 between interacting mycelia of a wood-decomposing fungus and ectomycorrhizal fungi in microcosm system. New Phytol 144: 183–193
Martin, F, Zaiou, M, Le Tacon, F, Rygiewicz, P (1991) Strain specific differences in ribosomal DNA from the ectomycorrhizal fungus Laccaria bicolor (Maire) Orton and Laccaria laccata (Scop ex Fr) Br. Ann For Sci 48: 297–305
Marx, DH, Ruehle, JL, Kenny, DS, Cordell, CE, Molina, RJ, Pawuk, WH, Navratil, S, Tinus, RW, Goodwin, OCG (1982) Commercial vegetative inoculum of Pisolithus tinctorius and inoculation techniques for development of ectomycorrhizae on container-grown tree seedlings. For Sci 28: 373–400
Menkis, A, Allmer, J, Vasiliauskas, R, Lygis, V, Stenlid, J, Finlay, R (2004) Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris. Mycol Res 108: 965–973
Menkis, A, Vasiliauskas, R, Taylor, AFS, Stenlid, J, Finlay, R (2005) Fungal communities in mycorrhizal roots of conifer seedlings in forest nurseries under different cultivation systems, assessed by morphotyping, direct sequencing and mycelial isolation. Mycorrhiza 16: 33–41
Parlade, J, Alvarez, IF (1993) Coinoculation of aseptically grown Douglas fir with pairs of ectomycorrhizal fungi. Mycorrhiza 3: 93–96
Peter, M, Ayer, F, Egli, S, Honneger, R (2001) Above- and below-ground community structure of ectomycorrhizal fungi in three Norway spruce (Picea abies) stands in Switzerland. Can J Bot 79: 1134–1151
Sen, R (1990) Intraspecific variations in two species of Suillus from Scots pine (Pinus sylvestris L.) forests based on somatic incompatibility and isozyme analysis. New Phytol 114: 607–614
Singh, S (1999) Effect of edaphic and climatic factors on the development of mycorrhiza in tree nurseries (part I): effect of soil moisture, soil texture, and temperature. Mycorrhiza News 11: 2–10
Singh, S (2000) Effect of edaphic and climatic factors on the development of mycorrhiza in tree nurseries (part II): effect of soil pH, light, and carbon dioxide. Mycorrhiza News 11: 3–13
Smith, SE, Read, DJ (1997) Mycorrhizal Symbiosis, 2nd ed. Academic Press, San Diego
Taylor, DL, Bruns, TD (1999) Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities. Mol Ecol 8: 1837–1850
Thomas, GW, Rogers, D, Jackson, RM (1983) Changes in the mycorrhizal status of Sitka spruce following outplanting. Plant Soil 71: 319–323
Thompson, JD, Gibson, TJ, Plewniak, F, Jeanmougin, F, Higgins, DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876–4882
Ursic, M, Peterson, L (1997) Morphological and anatomical characterization of ectomycorrhizas and ectendomycorrhizas on Pinus strobus seedlings in a southern Ontario nursery. Can J Bot 75: 2057–2072
White, T, Bruns, TD, Lee, S, Taylor, JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis, M, Gelfand, D, Sninsky, J, White, JT (Eds.) PCR Protocols, Academic Press, San Diego, pp 315–322
Wiklund, K, Nilsson, LO, Jacobsson, S (1995) Effect of irrigation, fertilization, and artificial drought on basidioma production in a Norway spruce stand. Can J Bot 73: 200–208
Zhu, H, Higginbotham, KO, Dancik, BP, Navratil, S (1988) Intraspecific genetic variability of isoenzymes in the ectomycorrhizal fungus Suillus tormentosus. Can J Bot 66: 588–594
Acknowledgments
We thank Dr. Mark G. Tjoelker from the Texas A&M University for discussion on an early draft of this article and for language corrections, the staff of the forest nurseries examined in the study for detailed information on nursery conditions, and Halina Narożna for morphotyping. This research was supported by the KBN Grant No. 6 PO6L 027 22.
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Trocha, L.K., Rudawska, M., Leski, T. et al. Genetic Diversity of Naturally Established Ectomycorrhizal Fungi on Norway Spruce Seedlings under Nursery Conditions. Microb Ecol 52, 418–425 (2006). https://doi.org/10.1007/s00248-006-9110-4
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DOI: https://doi.org/10.1007/s00248-006-9110-4