Abstract
Extracellular polymeric substances (EPS) play an important role in bacterial mat formation and sediment stabilisation of coastal zones. The analysis of these secretion products on a molecular level is a prerequisite to understand their formation mechanisms and ecological function in microbial consortia. The present study focuses on the optimisation of EPS isolation and characterisation from cohesive cyanobacterial mats. Extracted EPS were analysed for quantity, content of total organic carbon and nitrogen, and bulk contents of neutral sugars, uronic acids, and proteins. These criteria are strongly influenced by the extraction conditions applied and therefore, the effects of different extraction media (NaCl or artificial seawater), addition of EDTA, centrifugal force, and purification via repeated ethanol precipitation on extraction success were determined. From this an optimised extraction procedure for EPS resulted. When using fresh mat samples, the yield of EPS amounted to 3.3 ± 0.8 mg g−1 mat (dw). The isolated EPS were composed of nearly equal amounts of proteins and uronic acids (12.7 ± 1.5 and 11.8 ± 1.1%, respectively) and the bulk content of neutral sugars was 30.5 ± 2.6%. High contents of TOC and TN indicated relatively pure EPS and only a low contribution of inorganic compounds. Furthermore, low contents of 2-keto-3-deoxyoctonate and the small protein/polysaccharide-ratio in the EPS extracted by our method, signified low contaminations by intracellular polymers and hence a low rupture of cells. Our method provides an useful tool to evaluate further investigations of the composition, characteristics and properties of EPS on a sound basis.
Similar content being viewed by others
References
Azeredo J, Lazarova V, Oliveira R (1999) Methods to extract the exopolymeric matrix from biofilms: a comparative study. Water Sci Technol 39:243–250
Blumenkrantz N, Asboe-Hansen G, (1973) New method for quantitative determination of uronic acids. Anal Biochem 54:484–489
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein–dye binding. Anal Biochem 72:248–254
Brown MJ, Lester JN (1980) Comparison of bacterial extracellular polymer extraction methods. Appl Environ Microbiol 40:179–185
Comte S, Guibaud G, Baudu M (2006) Relations between extraction protocols for activated sludge extracellular polymeric substances (EPS) and EPS complexation properties: part I. Comparison of the efficiency of eight EPS extraction methods. Enzyme Microb Technol 38:237–245
de Brouwer J (2002) Dynamics in extracellular carbohydrate production by marine benthic diatoms. University of Nijmegen, Netherlands
de Brouwer JFC, Stal LJ (2001) Short-term dynamics in microphytobenthos distribution and associated extracellular carbohydrates in surface sediments of an intertidal mudflat. Mar Ecol Prog Ser 218:33–44
de Philippis R, Margheri MC, Materassi R, Vincenzini M (1998) Potential of unicellular cyanobacteria from saline environments as exopolysaccharide producers. Appl Environ Microbiol 64:1130–1132
de Winder B, Staats N, Stal LJ, Paterson DM (1999) Carbohydrate secretion by phototrophic communities in tidal sediments. J Sea Res 42:131–146
Decho AW (1990) Microbial exopolymer secretions in ocean environments: their role(s) in food webs and marine processes. Oceanogr Mar Biol Annu Rev 28:73–153
Decho AW (1994) Molecular-scale events influencing the microscale cohensiveness of exopolymers. In: Krumbein WE, Paterson DM, Stal LJ (eds) Biostabilization of Sediments. BIS Verlag, Oldenburg, pp 135–148
Decho AW (2000) Microbial biofilms in intertidal systems: an overview. Cont Shelf Res 20:1257–1273
Decho AW, Visscher PT, Reid RP (2005) Production and cycling of natural microbial exopolymers (EPS) within a marine stromatolite. Palaeogeogr Palaeoclimatol Palaeoecol 219:71–86
Dubois M, Gilles KA, Hamilton JK, Rebers PA, Smith F (1956) Colorimetric method for determination of sugars and related substances. Anal Chem 28:350–356
Fazio SA, Uhlinger DJ, Parker JH, White DC (1982) Estimations of uronic acids as quantitative measures of extracellular and cell wall polysaccharide polymers from environmental samples. Appl Environ Microbiol 43:1151–1159
Fourçans A, de Oteyza TG, Wieland A, Sole A, Diestra E, van Bleijswijk J, Grimalt JO, Kuhl M, Esteve I, Muyzer G, Caumette P, Duran R (2004) Characterization of functional bacterial groups in a hypersaline microbial mat community (Salins-de-Giraud, Camargue, France). FEMS Microbiol Ecol 51:55–70
Gehrke T, Telegdi J, Thierry D, Sand W (1998) Importance of extracellular polymeric substances from Thiobacillus ferrooxidans for bioleaching. Appl Environ Microbiol 64:2743–2747
Gloaguen V, Morvan H, Hoffmann L (1995) Released and capsular polysaccharides of Oscillatoriaceae (Cyanophyceae, Cyanobacteria). Arch Hydrobiol Suppl Algol Stud 78:53–69
Karkhanis YD, Zeltner JY, Jackson JJ, Carlo DJ (1978) A new and improved microassay to determine 2-keto-3-deoxyoctonate in lipopolysaccharide of gram-negative bacteria. Anal Biochem 85:595–601
Krumbein WE, Paterson DM, Stal LJ (eds) (1994) Biostabilization of sediments. BIS-Verlag, Oldenburg
Liu H, Fang HHP (2002) Extraction of extracellular polymeric substances (EPS) of sludges. J Biotechnol 95:249–256
Mancuso Nichols CA, Guezennec J, Bowman JP (2005) Bacterial exopolysaccharides from extreme marine environments with special consideration of the Southern Ocean, sea ice, and Deep-Sea hydrothermal vents: a review. Mar Biotechnol 7:253–271
Mayer C, Moritz R, Kirschner C, Borchard W, Maibaum R, Wingender J, Flemming H-C (1999) The role of intermolecular interactions: studies on model systems for bacterial biofilms. Int J Biol Macromol 26:3–16
Parikh A, Madamwar D (2006) Partial characterization of extracellular polysaccharides from cyanobacteria. Bioresour Technol 97:1822–1827
Pepi M, Cesaro A, Liut G, Baldi F (2005) An antarctic psychrotrophic bacterium Halomonas sp. ANT-3b, growing on n-hexadecane, produces a new emulsyfying glycolipid. FEMS Microbiol Ecol 53:157–166
Richert L, Golubic S, Le Guedes R, Ratiskol J, Payri C, Guezennec J (2005) Characterization of exopolysaccharides produced by cyanobacteria isolated from Polynesian microbial mats. Curr Microbiol 51:379–384
Stal LJ (2000) Cyanobacterial mats and stromatolites. In: Whitton BA, Potts M (eds) The ecology of cyanobacteria. Kluwer, Dordrecht, pp 61–120
Stal LJ (2003) Microphytobenthos, their extracellular polymeric substances, and the morphogenesis of intertidal sediments. Geomicrobiol J 20:463–478
Uhlinger DJ, White DC (1983) Relationship between physiological status and formation of extracellular polysaccharide glycocalyx in Pseudomonas atlantica. Appl Environ Microbiol 45:64–70
Underwood GJC, Paterson DM, Parkes RJ (1995) The measurement of microbial carbohydrate exopolymers from intertidal sediments. Limnol Oceanogr 40:1243–1253
Wieland A, Zopfi J, Benthien M, Kühl M (2005) Biogeochemistry of an iron-rich hypersaline microbial mat (Camargue, France). Microb Ecol 49:34–49
Wingender J, Neu TR, Flemming HC (eds) (1999) Microbial extracellular polymeric substances. Springer, Berlin
Acknowledgments
This study was supported by the German Research Foundation (DFG, Grant Nr. MI 157/21-1 and WI 2094/2-1). The salt company Salins-du-Midi in Salin-de-Giraud, France, is thanked for access to the field site. Technical assistance by Sabine Beckmann, Sascha Herrlich, and Susanne Feindt are gratefully acknowledged. Niko Lahajnar and Renate Ebbinghaus are thanked for lyophilisation of the samples and TOC and TN analysis. Kerstin Harneit is thanked for helpful discussions concerning photometric KDO analysis.
Author information
Authors and Affiliations
Corresponding author
Additional information
Communicated by M. Wahl.
Rights and permissions
About this article
Cite this article
Klock, JH., Wieland, A., Seifert, R. et al. Extracellular polymeric substances (EPS) from cyanobacterial mats: characterisation and isolation method optimisation. Mar Biol 152, 1077–1085 (2007). https://doi.org/10.1007/s00227-007-0754-5
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00227-007-0754-5