Skip to main content
Log in

High mass accuracy and high mass resolving power FT-ICR secondary ion mass spectrometry for biological tissue imaging

  • Research Paper
  • Published:
Analytical and Bioanalytical Chemistry Aims and scope Submit manuscript

Abstract

Biological tissue imaging by secondary ion mass spectrometry has seen rapid development with the commercial availability of polyatomic primary ion sources. Endogenous lipids and other small bio-molecules can now be routinely mapped on the sub-micrometer scale. Such experiments are typically performed on time-of-flight mass spectrometers for high sensitivity and high repetition rate imaging. However, such mass analyzers lack the mass resolving power to ensure separation of isobaric ions and the mass accuracy for elemental formula assignment based on exact mass measurement. We have recently reported a secondary ion mass spectrometer with the combination of a C60 primary ion gun with a Fourier transform ion cyclotron resonance mass spectrometer (FT-ICR MS) for high mass resolving power, high mass measurement accuracy, and tandem mass spectrometry capabilities. In this work, high specificity and high sensitivity secondary ion FT-ICR MS was applied to chemical imaging of biological tissue. An entire rat brain tissue was measured with 150 μm spatial resolution (75 μm primary ion spot size) with mass resolving power (mm 50%) of 67,500 (at m/z 750) and root-mean-square measurement accuracy less than two parts-per-million for intact phospholipids, small molecules and fragments. For the first time, ultra-high mass resolving power SIMS has been demonstrated, with mm 50% > 3,000,000. Higher spatial resolution capabilities of the platform were tested at a spatial resolution of 20 μm. The results represent order of magnitude improvements in mass resolving power and mass measurement accuracy for SIMS imaging and the promise of the platform for ultra-high mass resolving power and high spatial resolution imaging.

C60 secondary ion FT-ICR MS provides unprecedented mass resolving power and mass accuracy for SIMS imaging of biological tissue sections. Overlaid selected ion images from rat brain (left) and high spatial resolution imaging of organic dye underneath a TEM grid (right).

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6

Similar content being viewed by others

References

  1. Benninghoven A (1973) Surface investigation of solids by the statistical method of secondary ion mass spectroscopy (SIMS). Surf Sci 35:427–457

    Article  CAS  Google Scholar 

  2. Benninghoven A (1994) Surface-analysis by secondary-ion mass-spectrometry (SIMS). Surf Sci 299(1–3):246–260

    Article  Google Scholar 

  3. Vickerman JC, Briggs D (eds) (2001) ToF-SIMS: Surface analysis by mass spectrometry. SurfaceSpectra Manchester

  4. Brunelle A, Laprevote O (2009) Lipid imaging with cluster time-of-flight secondary ion mass spectrometry. Anal Bioanal Chem 393(1):31–35

    Article  CAS  Google Scholar 

  5. Fletcher JS (2009) Cellular imaging with secondary ion mass spectrometry. Analyst 134(11):2204–2215

    Article  CAS  Google Scholar 

  6. Touboul D, Laprévote O, Brunelle A (2011) Micrometric molecular histology of lipids by mass spectrometry imaging. Curr Opin Chem Biol 15(5):725–732

    Article  CAS  Google Scholar 

  7. Passarelli MK, Winograd N (2011) Lipid imaging with time-of-flight secondary ion mass spectrometry (ToF-SIMS). Biochim Biophys Acta 1811(11):976–990

    Article  CAS  Google Scholar 

  8. Touboul D, Kollmer F, Niehuis E, Brunelle A, Laprévote O (2005) Improvement of biological time-of-flight-secondary ion mass spectrometry imaging with a bismuth cluster ion source. J Am Soc Mass Spectrom 16(10):1608–1618

    Article  CAS  Google Scholar 

  9. Benguerba M, Brunelle A, Della-Negra S, Depauw J, Joret H, Le Beyec Y, Blain MG, Schweikert EA, Assayag GB, Sudraud P (1991) Impact of slow gold clusters on various solids: nonlinear effects in secondary ion emission. Nucl Inst Methods Phys Res B 62(1):8–22

    Article  Google Scholar 

  10. Davies N, Weibel DE, Blenkinsopp P, Lockyer N, Hill R, Vickerman JC (2003) Development and experimental application of a gold liquid metal ion source. Appl Surf Sci 203:223–227

    Article  Google Scholar 

  11. Weibel D, Wong S, Lockyer N, Blenkinsopp P, Hill R, Vickerman JC (2003) A C60 primary ion beam system for time of flight secondary ion mass spectrometry: its development and secondary ion yield characteristics. Anal Chem 75(7):1754–1764

    Article  CAS  Google Scholar 

  12. Kollmer F (2004) Cluster primary ion bombardment of organic materials. Appl Surf Sci 231:153–158

    Article  Google Scholar 

  13. Winograd N (2005) The magic of cluster SIMS. Anal Chem 77(7):142A–149A

    Article  CAS  Google Scholar 

  14. Winograd N, Garrison BJ (2010) Biological cluster mass spectrometry. In: Leone SR, Cremer PS, Groves JT, Johnson MA, Richmond G (eds) Annual review of physical chemistry, vol 61, vol 61. Annual review of physical chemistry. Annual Reviews, Palo Alto, pp 305–322. doi:10.1146/annurev.physchem.040808.090249

  15. Fletcher JS, Vickerman JC, Winograd N (2011) Label free biochemical 2D and 3D imaging using secondary ion mass spectrometry. Curr Opin Chem Biol 15(5):733–740

    Article  CAS  Google Scholar 

  16. Castro ME, Russell DH (1984) Cesium ion desorption ionization with Fourier transform mass spectrometry (FTMS). Anal Chem 56(3):578–581

    Article  CAS  Google Scholar 

  17. Castro ME, Russell DH (1985) Desorption ionization of cesium iodide by Fourier transform mass spectrometry. Anal Chem 57(12):2290–2293

    Article  CAS  Google Scholar 

  18. Amster IJ, Loo JA, Furlong JJP, McLafferty FW (1987) Cesium ion desorption ionization with Fourier-transform mass-spectrometry. Anal Chem 59(2):313–317

    Article  CAS  Google Scholar 

  19. Alvarez J, Cooks RG, Barlow SE, Gaspar DJ, Futrell JH, Laskin J (2005) Preparation and in situ characterization of surfaces using soft landing in a Fourier transform ion cyclotron resonance mass spectrometer. Anal Chem 77(11):3452–3460

    Article  CAS  Google Scholar 

  20. Ijames CF, Wilkins CL (1990) An external secondary ion-source for Fourier-transform mass-spectrometry. J Am Soc Mass Spectrom 1(3):208–216

    Article  CAS  Google Scholar 

  21. Irion MP, Selinger A, Wendel R (1990) Secondary ion Fourier-transform mass-spectrometry—a new approach towards the study of metal cluster ion chemistry. Int J Mass Spectrom Ion Process 96(1):27–47

    Article  CAS  Google Scholar 

  22. McCullough SM, Gard E, Lebrilla CB (1991) A 3T external source quadrupole Fourier-transform mass-spectrometer for ion molecule reactions and analysis. Int J Mass Spectrom Ion Process 107(1):91–102

    Article  CAS  Google Scholar 

  23. Maharrey S, Bastasz R, Behrens R, Highley A, Hoffer S, Kruppa G, Whaley J (2004) High mass resolution SIMS. Appl Surf Sci 231:972–975

    Article  Google Scholar 

  24. Carado A, Kozole J, Passarelli M, Winograd N, Loboda A, Bunch J, Wingate J, Hankin J, Murphy R (2008) Biological tissue imaging with a hybrid cluster SIMS quadrupole time-of-flight mass spectrometer. Appl Surf Sci 255(4):1572–1575

    Article  CAS  Google Scholar 

  25. Carado A, Kozole J, Passarelli M, Winograd N, Loboda A, Wingate J (2008) Cluster SIMS with a hybrid quadrupole time-of-flight mass spectrometer. Appl Surf Sci 255(4):1610–1613

    Article  CAS  Google Scholar 

  26. Carado A, Passarelli MK, Kozole J, Wingate JE, Winograd N, Loboda AV (2008) C-60 secondary ion mass spectrometry with a hybrid-quadrupole orthogonal time-of-flight mass spectrometer. Anal Chem 80(21):7921–7929

    Article  CAS  Google Scholar 

  27. Fletcher JS, Rabbani S, Henderson A, Blenkinsopp P, Thompson SP, Lockyer NP, Vickerman JC (2008) A new dynamic in mass spectral imaging of single biological cells. Anal Chem 80(23):9058–9064

    Article  CAS  Google Scholar 

  28. Hill R, Blenkinsopp P, Thompson S, Vickerman J, Fletcher JS (2011) A new time-of-flight SIMS instrument for 3D imaging and analysis. Surf Interface Anal 43(1–2):506–509

    Article  CAS  Google Scholar 

  29. Smith DF, Robinson EW, Tolmachev AV, Heeren RMA, Paša-Tolić L (2011) C-60 secondary ion Fourier transform ion cyclotron resonance mass spectrometry. Anal Chem 83(24):9552–9556

    Article  CAS  Google Scholar 

  30. Smith DF, Kharchenko A, Konijnenburg M, Klinkert I, Paša-Tolić L, Heeren RMA (2012) Advanced mass calibration and visualization for FT-ICR mass spectrometry imaging. J Am Soc Mass Spectrom 23(11):1865–1872

    Article  CAS  Google Scholar 

  31. Frigo M, Johnson SG (2005) The design and implementation of FFTW3. Proc IEEE 93(2):216–231

    Article  Google Scholar 

  32. Williams DK, Muddiman DC (2007) Parts-per-billion mass measurement accuracy achieved through the combination of multiple linear regression and automatic gain control in a Fourier transform ion cyclotron resonance mass spectrometer. Anal Chem 79(13):5058–5063

    Article  CAS  Google Scholar 

  33. Williams DK, Chadwick MA, Williams TI, Muddiman DC (2008) Calibration laws based on multiple linear regression applied to matrix-assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry. J Mass Spectrom 43(12):1659–1663

    Article  CAS  Google Scholar 

  34. Passarelli MK, Winograd N (2011) Characterizing in situ glycerophospholipids with SIMS and MALDI methodologies. Surf Interface Anal 43(1–2):269–271

    Article  CAS  Google Scholar 

  35. Fletcher JS, Vickerman JC (2010) A new SIMS paradigm for 2D and 3D molecular imaging of bio-systems. Anal Bioanal Chem 396(1):85–104

    Article  CAS  Google Scholar 

  36. Shi SDH, Hendrickson CL, Marshall AG (1998) Counting individual sulfur atoms in a protein by ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry: Experimental resolution of isotopic fine structure in proteins. Proc Natl Acad Sci USA 95(20):11532–11537

    Article  CAS  Google Scholar 

  37. Blake SL, Walker SH, Muddiman DC, Hinks D, Beck KR (2011) Spectral accuracy and sulfur counting capabilities of the LTQ-FT-ICR and the LTQ-Orbitrap XL for small molecule analysis. J Am Soc Mass Spectrom 22(12):2269–2275

    Article  CAS  Google Scholar 

  38. Miura D, Tsuji Y, Takahashi K, Wariishi H, Saito K (2010) A strategy for the determination of the elemental composition by Fourier transform ion cyclotron resonance mass spectrometry based on isotopic peak ratios. Anal Chem 82(13):5887–5891

    Article  CAS  Google Scholar 

  39. Nikolaev EN, Jertz R, Grigoryev A, Baykut G (2012) Fine structure in isotopic peak distributions measured using a dynamically harmonized Fourier transform ion cyclotron resonance cell at 7 T. Anal Chem 84(5):2275–2283

    Article  CAS  Google Scholar 

  40. Miladinovic SM, Kozhinov AN, Gorshkov MV, Tsybin YO (2012) On the utility of isotopic fine structure mass spectrometry in protein identification. Anal Chem 84(9):4042–4051

    Article  CAS  Google Scholar 

Download references

Acknowledgments

This work is part of the research program of the Foundation for Fundamental Research on Matter (FOM), which is part of The Netherlands Organization for Scientific Research (NWO). This publication was supported by the Dutch national program COMMIT. Portions of this research were supported by the American Reinvestment and Recovery Act of 2009 and the U.S. Department of Energy (DOE) Office of Biological and Environmental Research. The research described in this article was performed at the W. R. Wiley Environmental Molecular Sciences Laboratory (EMSL), a national scientific user facility sponsored by the Department of Energy’s Office of Biological and Environmental Research and located at Pacific Northwest National Laboratory (PNNL). PNNL is operated by Battelle for the U.S. Department of Energy under Contract DE-AC05-76RLO 1830. D.F.S. would like to acknowledge the Alternate Sponsored Fellowship program at PNNL and R.M.A.H. the EMSL Wiley Visiting Scientist Fellowship program for support of portions of this work. We thank Jordan Smith and Chuck Timchalk (PNNL) for supplying the rat brain section and Julia Jungmann (AMOLF) for preparing the TEM grid sample.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Ron M. A. Heeren.

Electronic supplementary material

Below is the link to the electronic supplementary material.

ESM (PDF 624 kb)

Rights and permissions

Reprints and permissions

About this article

Cite this article

Smith, D.F., Kiss, A., Leach, F.E. et al. High mass accuracy and high mass resolving power FT-ICR secondary ion mass spectrometry for biological tissue imaging. Anal Bioanal Chem 405, 6069–6076 (2013). https://doi.org/10.1007/s00216-013-7048-1

Download citation

  • Received:

  • Revised:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00216-013-7048-1

Keywords

Navigation