Abstract
Advances in water chemistry in the last decade have improved our knowledge about the genesis, composition, and structure of dissolved organic matter, and its effect on the environment. Improvements in analytical technology, for example Fourier-transform ion cyclotron (FT-ICR) mass spectrometry (MS), homo and hetero-correlated multidimensional nuclear magnetic resonance (NMR) spectroscopy, and excitation emission matrix fluorimetry (EEMF) with parallel factor (PARAFAC) analysis for UV–fluorescence spectroscopy have resulted in these advances. Improved purification methods, for example ultrafiltration and reverse osmosis, have enabled facile desalting and concentration of freshly collected DOM samples, thereby complementing the analytical process. Although its molecular weight (MW) remains undefined, DOM is described as a complex mixture of low-MW substances and larger-MW biomolecules, for example proteins, polysaccharides, and exocellular macromolecules. There is a general consensus that marine DOM originates from terrestrial and marine sources. A combination of diagenetic and microbial processes contributes to its origin, resulting in refractory organic matter which acts as carbon sink in the ocean. Ocean DOM is derived partially from humified products of plants decay dissolved in fresh water and transported to the ocean, and partially from proteinaceous and polysaccharide material from phytoplankton metabolism, which undergoes in-situ microbial processes, becoming refractory. Some of the DOM interacts with radiation and is, therefore, defined as chromophoric DOM (CDOM). CDOM is classified as terrestrial, marine, anthropogenic, or mixed, depending on its origin. Terrestrial CDOM reaches the oceans via estuaries, whereas autochthonous CDOM is formed in sea water by microbial activity; anthropogenic CDOM is a result of human activity. CDOM also affects the quality of water, by shielding it from solar radiation, and constitutes a carbon sink pool. Evidence in support of the hypothesis that part of marine DOM is of terrestrial origin, being the result of a long-term carbon sedimentation, has been obtained from several studies discussed herein.
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References
Piccolo A (2012) The nature of soil organic matter and innovative soil managements to fight global changes and maintain agricultural productivity. In: Piccolo A (ed) Carbon Sequestration in Agricultural Soils. Springer Verlag, Heidelberg, pp 1–20
Nebbioso A, Piccolo A (2011) Biomacromolecules 12:1187–1199
Thurman EN (1985) Organic Geochemistry of Natural Waters. Nijhoff/Junk, Dordrecht
Schnitzer M, Khan SU (1972) Humic Substances in Environment. Marcel Dekker, New York
Carter CW, Suffet IH (1982) Environ Sci Technol 16:735–740
Tipping E (1986) Mar Chem 18:161–169
Zafiriou OC, Joussot-Dubien J, Zepp RG, Zika RG (1984) Environ Sci Technol 18:358A–371A
Stewart AJ, Wetzel RG (1981) Arch Hydrobiol 92:265–286
Oliver BG, Thurman EM, Malcolm RL (1983) Geochim Cosmochim Acta 47:2031–2035
Jenne EA (1975) Sorption phenomenon in organics of bottom sediments. In Progress in Water Technology Vol. 7., ed. P. K. Krenkel. pp. 131–136
Fisher SG, Likens GE (1973) Ecol Monogr 43:421–439
Raymont J (1983) Plankton and productivity in the oceans. Pergamon Press, Oxford
Leenheer JA, Croue JP (2003) Environ Sci Technol 37:18A–26A
Schumacher M, Christl I, Vogt RD, Barmettler K, Jacobsen C, Kretzschmar R (2006) Biogeochemistry 80:263–275
Schlesinger WH, Melack JM (1981) Tellus 33:172–187
Jahnke R (1996) Glob Biogeochem Cycles 10:71–88
Griffith DR, McNichol AP, Xu L, McLaughlin FA, Macdonald RW, Brown KA, Eglinton TI (2012) Biogeosciences 9:1217–1224
Killops S D, Killops V. J. (2005) Introduction to organic geochemistry. Blackwell Publishing
Hatakka A (2001) In: Hofrichter M, Steinbüchel A (eds) Biodegradation of Lignin. Lignin, Humic Substances and Coal, vol 1. Wiley–VCH, Weinheim, pp 129–180
Christ MJ, David MB (1996) Soil Biol Biochem 28:1191–1199
Hedges JI, Mann DC (1979) Geochim Cosmochim Acta 43:1803–1807
Sarkanen KV, Ludwig CH (1971) Lignins: Occurrence, Formation, Structure and Reactions. Wiley, New York
Verma P, Junga U, Militz H, Mai C (2009) Holzforschung 63:371–378
Hollibaugh JT, Azam F (1983) Limnol Oceanogr 28:1104–1116
Nunn BL, Norbeck A, Keil RG (2003) Mar Chem 83:59–73
Piontek J, Lunau M, Händel N, Borchard C, Wurst M, Engel A (2010) Biogeosciences 7:1615–1624
Ingalls AE, Lee C, Wakeham SG, Hedges JI (2003) Deep-Sea Res Pt II 50:713–738
Hedges JI, Eglinton G, Hatcher PG, Kirchman DL, Arnosti C, Derenne S, Evershed RP, Kögel-Knabner I, de Leeuw JW, Littke R, Michaelis W, Rullkötter J (2000) Org Geochem 31:945–958
Dittmar T, Kattner G (2003) Mar Chem 82:115–123
Ding YX, Chin WC, Rodriguez A, Hung CC, Santschi PH, Verdugo P (2008) Mar Chem 112:11–19
Wakeham SG, Lee C, Hedges JI, Hernes PJ, Peterson MJ (1997) Geochim Cosmochim Acta 61:5363–5369
Simpson MJ, Hatcher PG (2004) Org Geochem 35:923–935
Burdige DJ (2007) Chem Rev 107:467–485
Keil RG, Tsamakis E, Hedges JI (2000) Early diagenesis of particulate amino acids in marine systems. In: Goodfriend GA, Collins MJ, Fogel ML, Macko SA, Wehmiller JF (eds) Perspectives in Amino Acid and Protein Geochemistry. Oxford University Press, New York, pp 69–82
Yamada N, Tanoue E (2006) Prog Oceanogr 69:1–18
Stürmer DH, Harvey GR (1977) Deep-Sea Res 24:303–309
Mills GL, Quinn JG (1981) Mar Chem 10:93–102
Perdue EM, Ritchie JD (2003) Dissolved organic matter in fresh waters. In Surface and Ground Water, Weathering, Erosion and Soils (ed. J. I. Drever) Vol. 5, Treatise on Geochemistry (eds. H. D. Holland and K. K. Turekian), Elsevier–Pergamon, Oxford, pp. 273–318
Benner R, Biddanda B, Black B, McCarthy M (1997) Mar Chem 57:243–263
Aluwihare LI, Repeta DJ, Chen RF (2002) Deep-Sea Res Pt II 49:4421–4437
Wong H, Mok KM, Fan XJ (2007) Desalination 210:44–51
Walker BD, Beauprè SR, Guilderson TP, Druffel ERM, McCarthy MD (2011) Geochim Cosmochim Acta 75:5187–5202
Tansakul C, Laborie S, Cabassud C (2011) Water Res 45:6362–6370
Koprivnjak JF, Perdue EM, Pfromm PH (2006) Water Res 40:3385–3392
Gurtler BK, Vetter TA, Perdue EM, Ingall E, Koprivnjak JF, Pfromm PH (2008) J Membrane Sci 323:328–336
Koprivnjak JF, Pfromm PH, Ingall E, Vetter TA, Schmitt-Kopplin P, Hertkorn N, Frommberger M, Knicker H, Perdue EM (2009) Geochim Cosmochim Acta 73:4215–4231
Huguet A, Roux-de Balmannc H, Parlanti E (2009) J Membr Sci 326:186–196
Gélinas Y, Baldock JA, Hedges JI (2001) Org Geochem 32:677–693
Sleighter R, McKee G, Hatcher P (2009) Org Geochem 40:119–125
Zsolnay A (2003) Geoderma 113:187–209
Sanchez-Gonzalez J, Garcia-Otero N, Moreda-Pineiro A, Bermejo-Barrera P (2012) Microchem J 102:75–82
Birdwell JE, Valsaraj KT (2010) Atmos Environ 44:3246–3253
Duarte RMBO, Duarte AC (2011) Trend Anal Chem 30:1659–1671
Schijf J, Zoll A (2011) J Colloid Interface Sci 361:137–147
Piccolo A (2001) Soil Sci 166:810–832
Kujawinski EB, Freitas MA, Zang X, Hatcher PG, Green-Church KB, Jones RB (2002) Org Geochem 33:171–180
Kim S, Simpson AJ, Kujawinski EB, Freitas MA, Hatcher PG (2003) Org Geochem 34:1325–1335
Kim S, Kramer RW, Hatcher PG (2003) Anal Chem 75:5336–5344
Koch BP, Dittmar T (2006) Rapid Commun Mass Spectrom 20:926–932
Dittmar T, Koch BP (2006) Mar Chem 102:208–217
Dittmar T, Paeng J (2009) Nat Geosci 2:175–179
Reemtsma T, These A, Linscheid M, Leenheer J, Spitzy A (2008) Environ Sci Technol 42:1430–1437
McKee G, Hatcher P (2010) Geochim Cosmochim Acta 74:6436–6450
Koch BP, Ludwichowski KU, Kattner G, Dittmar T, Witt M (2008) Mar Chem 111:233–241
Liu Z, Sleighter RL, Zhong J, Hatcher PG (2011) Estuar Coast Shelf Sci 92:205–216
Mawhinney DB, Rosario-Ortiz FL, Baik S, Vanderford BJ, Snyder SA (2009) J Chromatogr A 1216:1319–1324
Dittmar T, Whitehead K, Minor EC, Koch BP (2007) Mar Chem 107:378–387
Peuravuori J, Bursáková P, Pihlaja K (2007) Anal Bioanal Chem 389:1559–1568
Alberic P (2011) Rapid Commun Mass Spectrom 25:3012–3018
Lepane V, Tõnno I, Alliksaar T (2010) Procedia Chem 2:101–108
Kawasaki N, Matsushige K, Komatsu K, Kohzu A, Nara FW, Ogishi F, Yahata M, Mikami H, Goto T, Imai A (2011) Water Res 45:6240–6248
Lam B, Baer A, Alaee M, Lefebvre B, Moser A, Williams A, Simpson AJ (2007) Environ Sci Technol 41:8240–8247
Engel A, Händel N (2011) Mar Chem 127:180–191
Nebbioso A, Piccolo A, Spiteller M (2010) Rapid Commun Mass Spectrom 24:3163–3170
Wickramasekara S, Hernández-Ruiz S, Abrella L, Arnold R, Chorover J (2012) Anal Chim Acta 717:77–84
Paytan A, Cade-Menun BJ, McLaughlin K, Faul KL (2003) Mar Chem 82:55–70
Sannigrahi P, Ingall ED, Benner R (2005) Deep-Sea Res I 52:1429–1444
Abdulla HAN, Minor EC, Dias RF, Hatcher PG (2010) Geochim Cosmochim Acta 74:3815–3838
Kaiser E, Simpson AJ, Dria KJ, Sulzberger B, Hatcher PG (2003) Environ Sci Technol 37:2929–2935
Simpson AJ, Kingery WL, Hatcher PG (2003) Environ Sci Technol 37:337–342
Simpson AJ (2001) Soil Sci 166:795–890
Smejkalova D, Piccolo A (2007) Environ Sci Technol 42:699–706
Piccolo A, Conte P (1998) Advances in Nuclear Magnetic Resonance and Infrared Spectroscopies of Soil Organic Particles. In: Huang PM, Senesi N, Buffle J (eds) Structure and Surface Reactions of Soil Particles, IUPAC Environmental and Physical Series: Environmental Particles. Vol. 4, Analytical and Physical Chemistry of Soil. John Wiley and Sons, New York, pp 184–250
Conte P, Spaccini R, Smejkalova D, Nebbioso A, Piccolo A (2007) Chemosphere 69:1032–1039
Simpson AJ, McNally DJ, Simpson MJ (2010) Prog Nucl Magn Res Spectrosc 58:97–175
Belzile C, Roesler CS, Christensen JP, Shakhova N, Semiletov I (2006) Estuar Coast Shelf Sci 67:441–449
Parlanti E, Morin B, Vacher L (2002) Org Geochem 33:221–236
Fichot CG, Miller WL (2010) Remote Sens Environ 114:1363–1377
Singh S, D’Sa EJ, Swenson EM (2010) Sci Total Environ 408:3211–3222
Zhang Y, Yin Y, Feng L, Zhu G, Shi Z, Liu X, Zhang Y (2011) Water Res 45:5110–5122
Guéguen C, Granskog MA, McCullough G, Barber DG (2011) J Mar Syst 88:423–433
Mecozzi M, Pietroletti M, Conti ME (2008) Int J Environ Pollut 32:527–549
Verdugo P, Alldredge AL, Azam F, Kirchman DL, Passow U, Santschi PH (2004) Mar Chem 92:67–85
Bhaskar PV, Grossart HP, Bhosle NB, Simon M (2005) FEMS Microbiol Ecol 53:255–264
Passow U, Dunne J, Murray JW, Balistrieri L, Alldredge AL (2006) Mar Chem 100:323–336
Gogou A, Repeta D (2010) Mar Chem 121:215–223
Wakeham SG, Pease TK, Benner R (2003) Org Geochem 34:857–868
Minor EC, Simjouw JP, Boon JJ, Kerkhoff AE, van der Horst J (2002) Mar Chem 78:75–102
Quan TM, Repeta DJ (2007) Mar Chem 105:183–193
Kaiser K, Benner R (2009) Mar Chem 113:63–77
Tanoue E, Nishiyama S, Kamo M, Tsugita A (1995) Geochim Cosmochim Acta 59:2643–2648
Powell MJ, Sutton JN, Del Castillo CE, Timperman AT (2005) Mar Chem 95:183–198
Kuznetsova M, Lee C, Aller J (2005) Mar Chem 96:359–377
Orellana MV, Petersen TW, Diercks AH, Donohoe S, Verdugo P, van den Engh G (2007) Mar Chem 105:229–239
Nunn BL, Timperman AT (2007) Mar Ecol Prog Ser 332:281–289
Goutx M, Guigue C, Striby L (2003) Org Geochem 34:1465–1473
Sleighter R, Hatcher P (2008) Mar Chem 110:140–152
Hertkorn N, Benner R, Frommberger M, Schmitt-Kopplin P, Witt M, Kaiser K, Kettrup A, Hedges JI (2006) Geochim Cosmochim Acta 70:2990–3010
Mei ZP, Saucier FJ, LeFouest V, Zakardjian B, Sennville S, Xie H, Starr M (2010) Cont Shelf Res 30:2027–2042
Keith DJ, Yoder JA, Freeman SA (2002) Estuar Coast Shelf Sci 55:705–717
Yamashita Y, Tsukasaki A, Nishida T, Tanoue E (2007) Mar Chem 106:498–509
Yang L, Hong H, Guo W, Chen CTA, Pan PI, Feng CC (2011) Mar Chem 128–129:64–71
Tedetti M, Cuet P, Guigue C, Goutx M (2011) Sci Total Environ 409:2198–2210
Murphy KR, Stedmon CA, Waite TD, Ruiz GM (2008) Mar Chem 108:40–58
Granskog MA, Macdonald RW, Mundy CJ, Barber DG (2007) Cont Shelf Res 27:2032–2050
Luciani X, Mounier S, Paraquetti HHM, Redon R, Lucas Y, Bois A, Lacerda LD, Raynaud M, Ripert M (2008) Mar Environ Res 65:148–157
Kowalczuk P, Durako MJ, Young H, Kahn AE, Cooper WJ, Gonsior M (2009) Mar Chem 113:182–196
Kowalczuk P, Cooper WJ, Durako MJ, Kahn AE, Gonsior M, Young H (2010) Mar Chem 118:22–36
Du C, Shang S, Dong Q, Hub C, Wu J (2010) Estuar Coast Shelf Sci 88:350–356
Fellman JB, Spencer RGM, Hernes PJ, Edwards RT, D’Amore DV, Hood E (2010) Mar Chem 121:112–122
Lønborg C, Álvarez-Salgado XA, Davidson K, Martínez-García S, Teira E (2010) Mar Chem 119:121–129
Omori Y, Hama T, Ishii M, Saito S (2011) Mar Chem 124:38–47
Johannensen S, Miller W (2001) Mar Chem 76:271–283
Burns KA, Greenwood P, Benner R, Brinkman D, Brunskill G, Codi S, Zagorskis I (2004) Cont Shelf Res 24:2373–2394
Repeta DJ, Quan TM, Aluwihare LI, Accardi AM (2002) Geochim Cosmochim Acta 66:955–962
Amon RMW, Benner R (2003) Deep-Sea Res Pt I 50:151–169
Cappiello A, Trufelli H, Famiglini G, Pierini E, Capellacci S, Penna A, Ricci F, Ingarao C, Penna N (2007) Water Res 41:2911–2920
Kim S, Kaplan LA, Benner R, Hatcher PG (2004) Mar Chem 92:225–234
Hockaday WC, Grannas AM, Kim S, Hatcher PG (2006) Org Geochem 37:501–510
Dittmar T (2008) Org Geochem 39:396–407
Chen RF, Gardner GB (2004) Mar Chem 89:103–125
Piccolo A (2002) Adv Agron 75:57–134
Nebbioso A, Piccolo A (2012) Anal Chim Acta 720:77–90
Goni MA, Teixeira MJ, Perkey DW (2003) Estuar Coast Shelf Sci 57:1023–1048
Stabenau ER, Zika RG (2004) Mar Chem 89:55–67
Leenheer JA, Nanny MA, McIntyre C (2003) Environ Sci Technol 37:2323–2331
Minor EC, Steinbring CJ, Longnecker K, Kujawinski EB (2012) Org Geochem 43:1–11
Penezic A, Gasparovic B, Buric Z, Frka S (2010) Estuar Coast Shelf Sci 86:625–636
Shi W, Sun MY, Molina M, Hodson RE (2001) Org Geochem 32:453–467
Rochelle-Newall EJ, Fisher TR (2002) Mar Chem 77:7–21
Zhang Y, van Dijk MA, Liu M, Zhu G, Qin B (2009) Water Res 43:4685–4697
DePalma SGS, Arnold WR, McGeer JC, Dixon DG, Smith DS (2011) Appl Geochem 26:394–404
Huguet A, Vacher L, Relexans S, Saubusse S, Froidefond JM, Parlanti E (2009) Org Geochem 40:706–719
Stolpe B, Guo L, Shiller AM, Hassellov M (2010) Mar Chem 118:119–128
Boehme K, Wells M (2006) Mar Chem 101:95–103
Clark CD, Jimenez-Morais J, Jones G, Zanardi-Lamardo E, Moore CA, Zika RG (2002) Mar Chem 78:121–135
Jaffè R, Boyer JN, Lua X, Maie N, Yang C, Scully NM, Mocka S (2004) Mar Chem 84:195–210
Spencer RGM, Baker A, Ahad JME, Cowie GL, Ganeshram R, Upstill-Goddard RC, Uher G (2007) Sci Total Environ 373:305–323
Huguet A, Vacher L, Saubusse S, Etcheber H, Abril G, Relexans S, Ibalot F, Parlanti E (2010) Org Geochem 41:595–610
Guéguen C, McLaughlin FA, Carmack EC, Itoh M, Narita H, Nishino S (2011) The nature of colored dissolved organic matter in the southern Canada Basin and East Siberian Sea. Deep-Sea Res Pt II, in press doi:10.1016/j.dsr2.2011.05.004
Boyd TJ, Orsburn CL (2004) Mar Chem 89:189–210
Mazzuoli S, Focardi S, Bracchini L, Falcucci M, Loiselle SA, Rossi C (2005) Ecol Model 186:55–61
Dalzell BJ, Minor EC, Mopper KM (2009) Org Geochem 40:243–257
Shank GC, Zepp RG, Vähätalo A, Lee R, Bartels E (2010) Mar Chem 119:162–171
Guo W, Stedmon CA, Han Y, Wu F, Yu X, Hu M (2007) Mar Chem 107:357–366
Massicotte P, Frenette JJ (2011) Ecol Appl 21:2600–2617
Bracchini L, Cozar A, Dattilo AM, Loiselle SA, Tognazzi A, Azza N, Rossi C (2006) Chemosphere 63:1170–1178
Carstea EM, Baker A, Bieroza M, Reynolds D (2010) Water Res 44:5356–5366
Baghoth SA, Sharma SK, Amy GL (2011) Water Res 45:797–809
Guo L, White DM, Xu C, Santschi PH (2009) Mar Chem 114:63–71
Minor E, Stephens B (2008) Org Geochem 39:1489–1501
Dittmar T, Kattner G (2003) Mar Chem 83:103–120
Bianchi TS, DiMarco SF, Smith RW, Schreiner KM (2009) Mar Chem 117:32–41
Komada T, Reimers CR, Luther GW III, Burdige DJ (2004) Geochim Cosmochim Acta 68:4099–4111
Aguilar L, Thibodeaux LJ (2005) Chemosphere 58:1309–1318
Burdige DJ, Kline SW, Chen W (2004) Mar Chem 89:289–311
Schmidt F, Elvert M, Koch BP, Witt M, Hinrichs KU (2009) Geochim Cosmochim Acta 73:3337–3358
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Nebbioso, A., Piccolo, A. Molecular characterization of dissolved organic matter (DOM): a critical review. Anal Bioanal Chem 405, 109–124 (2013). https://doi.org/10.1007/s00216-012-6363-2
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DOI: https://doi.org/10.1007/s00216-012-6363-2