Abstract
The use of plant growth-promoting rhizobacteria as a sustainable alternative for chemical nitrogen fertilizers has been explored for many economically important crops. For one such strain isolated from rice rhizosphere and endosphere, nitrogen-fixing Pseudomonas stutzeri A15, unequivocal evidence of the plant growth-promoting effect and the potential contribution of biological nitrogen fixation (BNF) is still lacking. In this study, we investigated the effect of P. stutzeri A15 inoculation on the growth of rice seedlings in greenhouse conditions. P. stutzeri A15 induced significant growth promotion compared to uninoculated rice seedlings. Furthermore, inoculation with strain A15 performed significantly better than chemical nitrogen fertilization, clearly pointing to the potential of this bacterium as biofertilizer. To assess the contribution of BNF to the plant growth-promoting effect, rice seedlings were also inoculated with a nitrogen fixation-deficient mutant. Our results suggest that BNF (at best) only partially contributes to the stimulation of plant growth.
Abbreviations
- ARA:
-
Acetylene reduction assay
- BNF:
-
Biological nitrogen fixation
- KmR cassette:
-
Kanamycin resistance cassette
- PGPB:
-
Plant growth-promoting bacteria
- WAI:
-
Weeks after inoculation
References
Bashan Y, de-Bashan LE (2010) Chapter two—how the plant growth-promoting bacterium Azospirillum promotes plant growth-a critical assessment. Adv Agron 108:77–136
Choudhury ATMA, Kecskés ML, Kennedy IR (2014) Utilization of BNF technology supplementing urea N for sustainable rice production. J Plant Nutr 37:1627–1647
Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42:669–678
Dobbelaere S, Vanderleyden J, Okon Y (2003) Plant growth-promoting effects of diazotrophs in the rhizosphere. CRC Crit Rev. Plant Sci 22:107–149
Fageria N, Baligar V, Heinemann AB, Carvalho M (2014) Nitrogen uptake and use efficiency in rice. In: Rakshit A, Singh H, Shen A (eds) Nutrient use efficiency: from basics to advances. Springer, India
Glick BR (2014) Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiol Res 169:30–39
Halsey LG, Curran-Everett D, Vowler SL, Drummond GB (2015) The fickle P value generates irreproducible results. Nat Methods 12:179–185
Li Z, Chang S, Ye S, Chen M, Lin L, Li Y, Li S, An Q (2015) Differentiation of 1-aminocyclopropane-1-carboxylate (ACC) deaminase from its homologs is the key for identifying bacteria containing ACC deaminase. FEMS Microbiol Ecol 91: fiv112.
Pedraza RO, Ramírez-Mata A, Xiqui ML, Baca BE (2004) Aromatic amino acid aminotransferase activity and indole-3-acetic acid production by associative nitrogen-fixing bacteria. FEMS Microbiol Lett 233:15–21
Rediers H, Bonnecarrère V, Rainey PB, Hamonts K, Vanderleyden J, De Mot R (2003) Development and application of a dapB-based in vivo expression technology system to study colonization of rice by the endophytic nitrogen-fixing bacterium Pseudomonas stutzeri A15. Appl Environ Microb 69:6864–6874
Rediers H, Vanderleyden J, De Mot R (2009) Nitrate respiration in Pseudomonas stutzeri A15 and its involvement in rice and wheat root colonization. Microbiol Res 164:461–468
Shen X, Hu H, Peng H, Wang W, Zhang X (2013) Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas. BMC Genom 14:271
Sullivan GM, Feinn R (2012) Using effect size—or why the P value is not enough. J Grad. Med Educ 4:279–282
Vermeiren H, Vanderleyden J, Hai W (1998) Colonization and nifH expression on rice roots by Alcaligenes faecalis A15. In: Malik KA, Mirza MS, Ladha JK (eds) Nitrogen fixation with non-legumes. Springer, Netherlands
Vermeiren H, Willems A, Schoofs G, de Mot R, Keijers V, Hai W, Vanderleyden J (1999) The rice inoculant strain Alcaligenes faecalis A15 is a nitrogen-fixing Pseudomonas stutzeri. Syst Appl Microbiol 22:215–224
Wuensch K (2012) Using SPSS to obtain a confidence interval for Cohen’s d. http://core.ecu.edu/psyc/wuenschk/SPSS/CI-d-SPSS.pdf. Accessed 8 July 2015
Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H, Liu W, He S, Geng L, Zhang X, Yang F, Yu H, Zhan Y, Li D, Lin Z, Wang Y, Elmerich C, Lin M, Jin Q (2008) Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc Natl Acad Sci USA 105:7564–7569
Yan Y, Ping S, Peng J, Han Y, Li L, Yang J, Dou Y, Li Y, Fan H, Fan Y, Li D, Zhan Y, Chen M, Lu W, Zhang W, Cheng Q, Jin Q, Lin M (2010) Global transcriptional analysis of nitrogen fixation and ammonium repression in root-associated Pseudomonas stutzeri A1501. BMC Genom 11:11
Acknowledgements
VTKP was granted the Faculty for the Future Fellowships 2014 and 2015 (Schlumberger Foundation). SS was supported by a postdoctoral grant from the Research Foundation-Flanders (FWO-Vlaanderen). This research was funded by a Bilateral Research Cooperation Project between Vietnam and Belgium (Grant Nos. GA03812N and FWO.2011.29, FWO-NAFOSTED). The authors also wish to thank the International Rice Research Institute (IRRI, Philippines) for providing rice seeds of IR42.
Author information
Authors and Affiliations
Corresponding author
Additional information
Communicated by Erko Stackebrandt.
Electronic supplementary material
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Pham, V.T.K., Rediers, H., Ghequire, M.G.K. et al. The plant growth-promoting effect of the nitrogen-fixing endophyte Pseudomonas stutzeri A15. Arch Microbiol 199, 513–517 (2017). https://doi.org/10.1007/s00203-016-1332-3
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s00203-016-1332-3