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Root-associated bacterial diversities of Oryza rufipogon and Oryza sativa and their influencing environmental factors

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Abstract

Oryza rufipogon is the ancestor of human-cultivated Oryza sativa. However, little is known about the difference between the root-associated microorganisms of O. rufipogon and O. sativa. In this study, the root-associated bacteria of O. rufipogon, Leersia hexandra, and O. sativa from different latitudes in China were studied by DGGE analysis. Their bacterial community structures were compared by principal component analysis. The relationship between root-associated bacteria and soil properties was explored by canonical correspondence analysis. The relationships of glomalin-related soil protein (GRSP) content, soluble sugar content, proline content of the plant, and bacterial diversity indices of their root-associated microorganisms were also investigated. We found both broad-spectrum and host-specific bacteria, and the similarity, diversity and abundance indices of O. rufipogon and L. hexandra were higher than O. sativa root-associated bacteria. However, even living in the same habitat, O. rufipogon and L. hexandra selected different root-associated bacteria. Microbial composition was primarily correlated with available N, P, and K and the annual precipitation. We also found a positive correlation between the soluble sugar content of the plant and GRSP content of the root soil. The above results indicated that the community structure of root-associated bacteria differs between wild rice and cultivated rice. Human activity and the natural selection of the host plants shaped the differences, consistent with our hypothesis.

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Acknowledgements

We are thankful for the help from Dr. Jun Rong, Dr. Zhiping Song, and Dr. Yuanjing Li in collecting the samples. This work is financially supported by the Chinese Academic project B (XDB15030103), National Project (2016YFC0501202), the National Natural Science Foundation of China (41571255, 31370144), and the Natural Science Foundation of Jilin Province (20140101017JC).

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Authors and Affiliations

  1. Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun, Jilin, China

    Lei Tian, Xue Zhou, Lina Ma, Shangqi Xu, Fahad Nasir & Chunjie Tian

  2. University of Chinese Academy of Sciences, Beijing, China

    Lei Tian & Shangqi Xu

  3. School of Life Sciences, Northeast Normal University, Changchun, Jilin, China

    Fahad Nasir

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  1. Lei Tian
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  2. Xue Zhou
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  3. Lina Ma
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Correspondence to Chunjie Tian.

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Communicated by Erko Stackebrandt.

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Tian, L., Zhou, X., Ma, L. et al. Root-associated bacterial diversities of Oryza rufipogon and Oryza sativa and their influencing environmental factors. Arch Microbiol 199, 563–571 (2017). https://doi.org/10.1007/s00203-016-1325-2

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  • DOI: https://doi.org/10.1007/s00203-016-1325-2

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