Abstract
The role of ribosome modulation factor (RMF) in protecting heat-stressed Escherichia coli cells was identified by the observation that cultures of a mutant strain lacking functional RMF (HMY15) were highly heat sensitive in stationary phase compared to those of the parent strain (W3110). No difference in heat sensitivity was observed between these strains in exponential phase, during which RMF is not synthesised. Studies by differential scanning calorimetry demonstrated that the ribosomes of stationary-phase cultures of the mutant strain had lower thermal stability than those of the parent strain in stationary phase, or exponential-phase ribosomes. More rapid breakdown of ribosomes in the mutant strain during heating was confirmed by rRNA analysis and sucrose density gradient centrifugation. Analyses of ribosome composition showed that the 100S dimers dissociated more rapidly during heating than 70S particles. While ribosome dimerisation is a consequence of the conformational changes caused by RMF binding, it may not therefore be essential for RMF-mediated ribosome stabilisation.
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Abbreviations
- DSC:
-
Differential scanning calorimetry
- MRD:
-
Maximum recovery diluent
- RMF:
-
Ribosome modulation factor
References
Anderson WA, Hedges ND, Jones MV, Cole MB (1991) Thermal inactivation of Listeria monocytogenes studied by differential scanning calorimetry. J Gen Microbiol 137:1419–1424
Apirakaramwong A, Fukuchi J, Kashiwagi K, Kakinuma Y, Ito E, Ishihama A, Igarashi K (1998) Enhancement of cell death due to decrease in Mg2+ uptake by OmpC (cation-selective porin) deficiency in ribosome modulation factor-deficient mutant. Biochem Biophys Res Commun 251:482–487
Bernabeu C, Lake JA (1982) Packing of 70s ribosomes in dimers formed at low ionic-strength—images of an unusual ribosome projection. J Mol Biol 160:369–373
Bonincontro A, Briganti G, Giansanti A, Pedone F, Risuleo G (1993) Effects of magnesium ions on ribosomes—a fluorescence study. Biochim Biophys Acta 1174:27–30
Fukuchi JI, Kashiwagi K, Yamagishi M, Ishihama A, Igarashi K (1995) Decrease in cell viability due to the accumulation of spermidine in spermidine acetyltransferase-deficient mutant of Escherichia coli. J Biol Chem 270:18831–18835
Garay-Arroyo A, Colmenero-Flores JM, Garciarrubio A, Covarrubias AA (2000) Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit. J Biol Chem 275:5668–5674
Gesteland RF (1966) Unfolding of Escherichia coli ribosomes by removal of magnesium. J Mol Biol 18:356–371
Hapke B, Noll H (1976) Structural dynamics of bacterial ribosomes. IV Classification of ribosomes by subunit interaction. J Mol Biol 105:97–109
Hurst A, Hughes A (1978) Stability of ribosomes of Staphylococcus aureus S6 sublethally heated in different buffers. J Bacteriol 133:564–568
Izutsu K, Wada A, Wada C (2001) Expression of ribosome modulation factor (RMF) in Escherichia coli requires ppGpp. Genes Cells 6:665–676
Kornblum JS, Projan SJ, Moghazeh SL, Novick RP (1988) A rapid method to quantitate non-labeled RNA species in bacterial cells. Gene 63:75–85
Laing LG, Gluick TC, Draper D (1994) Stabilization of RNA structure by Mg ions. Specific and non-specific effects. J Mol Biol 237:577–587
Lange R, Hengge-Aronis R (1991) Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5:49–59
Lepock JR, Frey HE, Inniss WE (1990) Thermal analysis of bacteria by differential scanning calorimetry—relationship of protein denaturation in situ to maximum growth temperature. Biochim Biophys Acta 1055:19–26
Loewen PC, Hu B, Strutinsky J, Sparling R (1998) Regulation in the rpoS regulon of Escherichia coli. Can J Microbiol 44:707–717
Macarthy BJ (1960) Variations in bacterial ribosomes. Biochim Biophys Acta 39:563–564
Mackey BM, Miles CA, Parsons SE, Seymour DA (1991) Thermal denaturation of whole cells and cell components of Escherichia coli examined by differential scanning calorimetry. J Gen Microbiol 137:2361–2374
Mackey BM, Miles CA, Seymour DA, Parsons SE (1993) Thermal denaturation and loss of viability in Escherichia coli and Bacillus stearothermophilus. Lett Appl Microbiol 16:56–58
Miles CA, Mackey BM, Parsons SE (1986) Differential scanning calorimetry of bacteria. J Gen Microbiol 132:939–952
Mohacsi-Farkas C, Farkas J, Simon A (1994) Thermal denaturation of bacterial cells examined by differential scanning calorimetry. Acta Alimentaria 23:157–168
Sabo B, Spirin AS (1971) Dissociation of 70S monoribosomes of Escherichia coli in relation to ionic strength, pH, and temperature. Mol Biol 4:509–511
Teixeira P, Castro H, Mohacsi-Farkas C, Kirby R (1997) Identification of sites of injury in Lactobacillus bulgaricus during heat stress. J Appl Microbiol 83:219–226
Tissieres A, Watson JD (1958) Ribonucleoprotein particles from Escherichia coli. Nature 182:778–780
Tissieres A, Watson JD, Schlessinger D, Hollingworth BR (1959) Ribonucleoprotein particles from Escherichia coli. J Mol Biol 1:221–233
Tolker-Nielsen T, Molin S (1996) Role of ribosome degradation in the death of heat-stressed Salmonella typhimurium. FEMS Microbiol Lett 142:155–160
Wada A (1998) Growth phase coupled modulation of Escherichia coli ribosomes. Genes Cells 3:203–208
Wada A, Yamazaki Y, Fujita N, Ishihama A (1990) Structure and probable genetic location of a ribosome modulation factor associated with 100S ribosomes in stationary phase Escherichia coli cells. Proc Natl Acad Sci USA 87:2657–2661
Wada A, Igarashi K, Yoshimura S, Aimoto S, Ishihama A (1995) Ribosome modulation factor—stationary growth phase-specific inhibitor of ribosome functions from Escherichia coli. Biochem Biophys Res Commun 214:410–417
Wada A, Mikkola R, Kurland CG, Ishihama A (2000) Growth phase-coupled changes of the ribosome profile in natural isolates and laboratory strains of Escherichia coli. J Bacteriol 182:2893–2899
Yamagishi M, Matsushima H, Wada A, Sakagami M, Fujita N, Ishihama A (1993) Regulation of the Escherichia coli rmf gene encoding the ribosome modulation factor—growth phase-dependent and growth rate-dependent control. EMBO J 12:625–630
Yoshida H et al (2002) The ribosome modulation factor (RMF) binding site on the 100S ribosome of Escherichia coli. J Biochem 132:983–989
Acknowledgements
The author is grateful to Professor Akira Ishihama, National Institute of Genetics, Mishima, Shizuoka, Japan, for providing E. coli strain HMY15, and to Dr Bernard Mackey, School of Food Biosciences, The University of Reading, UK, for his support and advice.
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Niven, G.W. Ribosome modulation factor protects Escherichia coli during heat stress, but this may not be dependent on ribosome dimerisation. Arch Microbiol 182, 60–66 (2004). https://doi.org/10.1007/s00203-004-0698-9
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DOI: https://doi.org/10.1007/s00203-004-0698-9