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Spontaneous chromosome circularization and amplification of a new amplifiable unit of DNA belonging to the terminal inverted repeats in Streptomyces ambofaciens ATCC 23877

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Abstract

In Streptomyces, the linear chromosomal DNA is highly unstable and undergoes large rearrangements usually at the extremities. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, AUD (amplifiable unit of DNA). In Streptomyces ambofaciens, two amplifiable regions (AUD6 and AUD90), located approximately 600 kb and 1,200 kb from the right chromosomal end respectively, have been characterized. Here, the isolation and molecular characterization of a new S. ambofaciens mutant strain exhibiting a green-pigmented phenotype is described; the wild-type produces a gray pigment. In this mutant, both chromosome ends were deleted, which probably led to circularization of the chromosome. These deletions were associated with amplification of a sequence belonging to the chromosomal terminal inverted repeats (TIRs), which might constitute the new fragment generated by the chromosomal circularization.

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References

  • Baltz RH (1980) Genetic recombination by protoplast fusion in Streptomyces. Dev Ind Microbiol 21:43–54

    CAS  Google Scholar 

  • Bao K, Cohen SN (2001) Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces. Genes Dev 15:1518–1527

    Article  CAS  PubMed  Google Scholar 

  • Bierman R, Logan R, O'Brien K, Seno ET, Nagaraja Rao R, Schoner BE (1992) Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. Gene 116:43–49

    CAS  PubMed  Google Scholar 

  • Chater KF (1998) Taking a genetic scalpel to the Streptomyces colony. Microbiology 144:1465–1478

    CAS  Google Scholar 

  • Dary A, Bourget N, Girard N, Simonet J-M, Decaris B (1992) Amplification of a particular sequence in Streptomyces ambofaciens RP181110 reversibly prevents spiramycin production. Res Microb 143:99–112

    Article  CAS  Google Scholar 

  • Demuyter P, Leblond P, Decaris B, Simonet JM (1988) Characterization of two families of spontaneously amplifiable units of DNA in Streptomyces ambofaciens. J Gen Microbiol 134:2001–2007

    CAS  PubMed  Google Scholar 

  • Demuyter P, Schneider D, Leblond P, Simonet J-M, Decaris B (1991) A chromosomal region as a hotspot for multiple rearrangements associated with genetic instability in Streptomyces ambofaciens DSM40697. J Gen Microbiol 137:491–499

    CAS  Google Scholar 

  • Dower WJ, Miller JF, Ragsdale CW (1988) High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16:6127–6145

    CAS  PubMed  Google Scholar 

  • Fischer G, Decaris B, Leblond P (1997) Occurrence of deletions associated with genetic instability in Streptomyces ambofaciens, is independent of the linearity of the chromosomal DNA. J Bacteriol 179:4553–4558

    CAS  PubMed  Google Scholar 

  • Fishman SE, Hershberger CL (1983) Amplified DNA in Streptomyces fradiae. J Bacteriol 155:459–466

    CAS  PubMed  Google Scholar 

  • Flett F, Mersinias V, Smith CP (1997) High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting Streptomyces. FEMS Microbiol Lett 155:223–229

    Article  CAS  PubMed  Google Scholar 

  • Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate DJ, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces—a laboratory manual. The John Innes Foundation, Norwich

  • Hütter R, Eckhardt T (1988) Genetic manipulation. In: Goodfellow M, Williams ST, Mordarski M (eds) Actinomycetes in biotechnology. Academic , London, pp 89–184

  • Leblond P, Decaris B (1999) Unstable linear chromosomes: the case of Streptomyces. In: Charlebois RL (ed) Organization of the prokaryotic genome. American Society for Microbiology Press, Washington DC, pp 235–261

  • Leblond P, Demuyter P, Moutier L, Laakel M, Decaris B, Simonet JM (1989) Hypervariability, a new phenomenon of genetic instability related to DNA amplification in Streptomyces ambofaciens. J Bacteriol 171:419–423

    CAS  PubMed  Google Scholar 

  • Leblond P, Fischer G, Francou FX, Berger F, Guérineau M, Decaris B (1996) The unstable region of Streptomyces ambofaciens includes 210 kb terminal inverted repeats flanking the extremities of the linear chromosomal DNA. Mol Microbiol 19:261–271

    CAS  PubMed  Google Scholar 

  • Lin YS, Chen CW (1997) Instability of artificially circularized chromosomes of Streptomyces lividans. Mol Microbiol 26:709–719

    CAS  PubMed  Google Scholar 

  • Martin P, Dary A, Decaris B (1998) Generation of a genetic polymorphism in clonal populations of the bacterium Streptomyces ambofaciens: characterization of different mutator states. Mutat Research 421:73–82

    Article  CAS  Google Scholar 

  • Martin P, Dary A, André A, Fischer G, Leblond P, Decaris B (1999) Intraclonal polymorphism in the bacterium Streptomyces ambofaciens ATCC 23877: evidence for a high degree of heterogeneity of the wild type clones. Mutat Res 430:75–85

    Article  CAS  PubMed  Google Scholar 

  • Mazodier P, Petter R, Thompson C (1989) Intergeneric conjugation between Escherichia coli and Streptomyces species. J Bacteriol 171:3583–3585

    CAS  PubMed  Google Scholar 

  • Pridham TG, Anderson P, Foly C, Lindenfelser LA, Hesseltine CW, Benedict RC (1956–1957) A selection of media for maintenance and taxonomic study of Streptomyces. Antibiotic Ann:947–953

    Google Scholar 

  • Rauland U, Glocker I, Redenbach M, Cullum J (1995) DNA amplifications and deletions in Streptomyces lividans 66 and the loss of one end of the linear chromosome. Mol Gen Genet 246:37–44

    CAS  PubMed  Google Scholar 

  • Redenbach M, Kleinert E., Stoll A. (2000) Identification of DNA amplifications near the center of the Streptomyces coelicolor M145 chromosome. FEMS Microbiol Lett 191:123–129

    Article  CAS  PubMed  Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York

    Google Scholar 

  • Schmid E, Buchler C, Altenbuchner J (1999) AUD4, a new amplifiable element from Streptomyces lividans. Microbiology 145:3331–3341.

    CAS  PubMed  Google Scholar 

  • Volff JN, Altenbuchner J (2000) The 1-kb-repeat-encoded DNA-binding protein as repressor of an α- glucosidase operon flanking the amplifiable sequence AUD1 of Streptomyces lividans. Microbiology 146:923–933.

    CAS  PubMed  Google Scholar 

  • Volff J-N, Viell P, Altenbuchner J (1997) Artificial circularization of the chromosome with concomitant deletion of its terminal inverted repeats enhances genetic instability and genome rearrangements in Streptomyces lividans. Mol Gen Genet 253:753–760

    Article  CAS  PubMed  Google Scholar 

  • Young M, Cullum J (1987) A plausible mechanism for large-scale chromosomal DNA amplification in streptomycetes. FEBS Lett 212:10–14

    Article  CAS  PubMed  Google Scholar 

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Acknowledgements

Many thanks are given to Paul Sumby for his help in the English formulation of the manuscript. This work was supported by ′′ le Ministère de la Jeunesse de l'Education Nationale et de la Recherche ′′.

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Correspondence to Annie Dary.

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Catakli, S., Andrieux, A., Leblond, P. et al. Spontaneous chromosome circularization and amplification of a new amplifiable unit of DNA belonging to the terminal inverted repeats in Streptomyces ambofaciens ATCC 23877. Arch Microbiol 179, 387–393 (2003). https://doi.org/10.1007/s00203-003-0534-7

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  • DOI: https://doi.org/10.1007/s00203-003-0534-7

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