Skip to main content
Log in

Interspecific relationships of the genus Cicer L. (Fabaceae) based on trnT-F sequences

  • Original Paper
  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

The trnT-F region in chloroplasts was sequenced to elucidate interspecific phylogenetic relationships in the genus Cicer. Twenty-five species representing four sections and two outgroups were analyzed. A phylogenetic analysis revealed three major clades in the genus Cicer. Inferred phylogenetic relationships support multiple origins of annual species in the genus Cicer. Low variation within the most perennial species in the sequence regions suggests they may have originated during a period of rapid diversification after the genus arose. High levels of sequence divergence, biogeographical patterns and morphological traits between African and Eurasian groups of species suggest that Cicer may have independently diverged on each continent. Phylogenetic analysis of sequence data did not support the monophyly of the currently recognized sections and indicated the need for a revision of the infrageneric classification.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Ahmad F (1999) Random amplified polymorphic DNA (RAPD) analysis reveals genetic relationships among the annual Cicer species. Theor Appl Genet 98:657–663

    CAS  Google Scholar 

  • Ahmad F, Slinkard AE (1992) Genetic relationships in the genus Cicer L. as revealed by polyacrylamide gel electrophoresis of seed storage proteins. Theor Appl Genet 84:688–692

    Google Scholar 

  • Ahmad F, Gaur PM, Slinkard AE (1992) Isozyme polymorphism and phylogenetic interpretations in the genus Cicer L. Theor Appl Genet 83:620–627

    Google Scholar 

  • Catalàn P, Kellogg EA, Olmstead RG (1997) Phylogeny of Poaceae subfamily Pooideae based on chloroplast ndhF gene sequences. Mol Phylogenet Evol 8:150–166

    Article  PubMed  Google Scholar 

  • Choumane W, Winter P, Weigand F, Kahl G (2000) Conservation and variability of sequence-tagged microsatellite sites (STMs) from chickpea (Cicer arietinum L.) within the genus Cicer. Theor Appl Genet 101:269–278

    Article  Google Scholar 

  • Clegg MT, Zurawski G (1992) Chloroplast DNA and the study of plant phylogeny. In: Soltis PS, Soltis DE, Doyle JJ (eds) Molecular systematics of plants. Chapman and Hall, London, pp 1–13

  • Downie SR, Katz-Downie DS, Watson MF (2000) A phylogeny of the flowering plant family Apiaceae based on chloroplast DNA rpl16 and rpoC1 intron sequences: towards a suprageneric classification of subfamily Apioideae. Am J Bot 87:273–292

    CAS  PubMed  Google Scholar 

  • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783–791

    Google Scholar 

  • Gielly L, Taberlet P (1996) A phylogeny of the European gentians inferred from chloroplast trnL (UAA) intron sequences. Bot J Linn Soc 120:57–75

    Article  Google Scholar 

  • Iruela M, Rubio J, Cubero JI, Gil J, Millan T (2002) Phylogenetic analysis in the genus Cicer and cultivated chickpea using RAPD and ISSR markers. Theor Appl Genet 104:643–651

    Article  Google Scholar 

  • Javadi F, Yamaguchi H (2004) RAPD and seed coat morphology variation in annual and perennial species of the genus Cicer L. Genet Res Crop Evol (in press)

  • Kazan K, Muehlbauer FJ (1991) Allozyme variation and phylogeny in annual species of Cicer (Leguminosae). Plant Syst Evol 175:11–21

    CAS  Google Scholar 

  • Ladbi M, Robertson LD, Singh KB, Charrier A (1996) Genetic diversity and phylogenetic relationships among the annual Cicer species as revealed by isozyme polymorphism. Euphytica 88:181–188

    CAS  Google Scholar 

  • Ladizinsky G, Adler A (1975) The origin of chickpea as indicated by seed protein electrophoresis. Isr J Bot 24:183–189

    Google Scholar 

  • Ladizinsky G, Adler A (1976) Genetic relationships among the annual species of Cicer L. Theor Appl Genet 48:197–203

    Google Scholar 

  • Mummenhoff K, Brüggemann H, Bowman JL (2001) Chloroplast DNA phylogeny and biogeography of Lepidium (Brassicaceae). Am J Bot 88 :2051–2063

    CAS  Google Scholar 

  • Ohsako T, Ohnishi O (2000) Intra- and interspecific phylogeny of wild Fagopyrum (Polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA. Am J Bot 87:573–582

    CAS  PubMed  Google Scholar 

  • Popov MG (1976) Genus Cicer and its species: on the problem of origin of mediterranean flora, and experiment in morphological and geographical monographing. Indian National Scientific Documentation Centre, New Delhi

    Google Scholar 

  • Serret DM, Udupa SM, Weigand F (1997) Assessment of genetic diversity of cultivated chickpea using microsatelite-derived RFLP markers: implications for origin. Plant Breed 116:573–578

    CAS  Google Scholar 

  • Singh KB, Ocampo B (1993) Interspecific hybridization in annual Cicer species. J Genet Breed 47:199–204

    Google Scholar 

  • Sudupak MA, Akkaya MS, Kence A (2002) Analysis of genetic relationships among perennial and annual Cicer species growing in Turkey using RAPD markers. Theor Appl Genet 105:1220–1228

    Article  CAS  PubMed  Google Scholar 

  • Sudupak MA, Akkaya MS, Kence A (2003) Genetic relationships among perennial and annual Cicer species growing in Turkey assessed by AFLP. Theor Appl Genet 10.1007/s00122-003-1505-8

  • Swofford DL (2000) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b4a. Sinauer Associates, Sunderland, Mass.

  • Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105–1109

    CAS  PubMed  Google Scholar 

  • Tayyar RI, Waines JG (1996) Genetic relationships among annual species of Cicer (Fabaceae) using isozyme variation. Theor Appl Genet 92:245–254

    Google Scholar 

  • Udupa SM, Robertson LD, Weigand F, Baum M, Kahl G (1999) Allelic variation at (TAA)n microsatellite loci in a world collection of chickpea (Cicer arietinum L.) germplasm. Mol Gen Genet 261:354–363

    CAS  PubMed  Google Scholar 

  • Van der Maesen LJG (1972) Cicer L.: a monograph of the genus, with especial reference to the chickpea (Cicer arietinum L.), its ecology and cultivation. Mededelingen Landbouwhogeschool Wageningen, Wageningen

  • Van der Maesen LJG (1987) Origin, history and taxonomy of chickpea. In: Saxena MC, Singh KB (eds) The chickpea. International Publishing, London, pp 11–34

  • Zohary D, Hopf M (1993) Domestication of plants in the old world. Oxford University Press, Oxford

Download references

Acknowledgements

We are grateful to Fred Muehlbauer and Claric Coyne of the United States Department of Agriculture and Ali Asghar Maassoumi of the Central Herbarium of Iran for kindly providing seeds and samples from herbarium specimens. We also thank the National Plant Gene Bank of Iran, the Center for Agricultural Research in Dry Areas and the International Crops Research Institute for the Semi-Arid Tropics for seeds of some Cicer species. We wish to extend our gratitude to Yuichiro Nakayama, Shahrokh Kazempour Osaloo, Martin F. Wojciechowski, Aaron Liston and Akiko Soejima for their technical advice and suggestions during this research. We thank Christian Möllers and two anonymous reviewers for detailed comments and advice that greatly improved the manuscript.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Hirofumi Yamaguchi.

Additional information

Communicated by C. Möllers

Rights and permissions

Reprints and permissions

About this article

Cite this article

Javadi, F., Yamaguchi, H. Interspecific relationships of the genus Cicer L. (Fabaceae) based on trnT-F sequences. Theor Appl Genet 109, 317–322 (2004). https://doi.org/10.1007/s00122-004-1622-z

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00122-004-1622-z

Keywords

Navigation