Skip to main content
Log in

Identification of QTLs related to cocoa resistance to three species of Phytophthora

  • Published:
Theoretical and Applied Genetics Aims and scope Submit manuscript

Abstract

This study aimed to compare the genetic control of cacao resistance to three species of Phytophthora: Phytophthora palmivora, Phytophthora megakarya and Phytophthora capsici. The study was conducted on 151 hybrid progenies created in Côte d'Ivoire and grown in a green-house in Montpellier. Phytophthora resistance was screened by leaf-test inoculation with two different strains per species. Selection of the best individuals for resistance to P. palmivora at a 10% selection rate, would lead to a genetic progress of 47% in the disease evaluation for this species and a genetic progress of 42% and 21% for the two other species. A genetic map with a total length of 682 cM was built with 213 markers, 190 AFLPs and 23 microsatellites. QTLs were identified using composite interval mapping. QTLs were found located in six genomic regions. One of these was detected with five strains belonging to the three Phytophthora species. Two other regions were detected with two or three strains of two different species. Three additional QTLs were detected for only one species of Phytophthora. Each QTL explained between 8 to 12% of the phenotypic variation. For each strain, between 11.5% to 27.5% of the total phenotypic variation could be explained by the QTLs identified. The identification of multiple QTLs involved in resistance to Phytophthora offers the possibility to improve durability of resistance in cocoa by a possible cumulation of many different resistance genes located in different chromosome regions using marker-aided selection.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1.

Similar content being viewed by others

References

  • Basten CJ, Weir BS, Zeng ZB (2002) QTL Cartographer: a reference manual and tutorial for QTL mapping. North Caroline State University, Department of Statistics, Raleigh, N.C. USA

    Google Scholar 

  • Blaha G, Lotodé R (1976) Un critère primordial de sélection du cacaoyer au Cameroun: la résistance à la pourriture brune des cabosses—Variations des réactions à la maladie en liaison avec les données écologiques et l'état physiologique des fruits. Café Cacao Thé 21:179–196

  • Brasier CM, Griffin MJ (1979) Taxonomy of the Phytophthora on cocoa, Trans British Mycol Soc 72:111–143

    Google Scholar 

  • Butler EJ (1919) Report of the Imperial Mycologist, 1918–1919. Sci Rep Res Inst Pusa 1919, p 82

  • Cilas C, Lanaud C, Paulin D, Nyasse S, N'Goran JAK, Kébé BI, Ducamp M, Flament MH, Risterucci AM, Pieretti I, Sounigo O, Thevenin JM, Despréaux D (1998) La résistance à la pourriture brune des cabosses due à Phytophthora spp. Recherche des composantes de la résistance. Plantations Rech Dév 5:441–449

    Google Scholar 

  • Crouzillat D, Phillips W, Fritz P, Pétiard V (2000) Quantitative trait loci analysis in Theobroma cacao using molecular markers. Inheritance of polygenic resistance to Phytophthora palmivora in two related cacao populations. Euphytica 114:25–36

    CAS  Google Scholar 

  • Enriquez GA, Soria JV (1996) Genetic research on cocoa diseases at CATIE (1960–1990). Proc Int Wkshp on the Contribution of Disease Resistance to Cocoa Improvement, Bahia, Brazil, pp 33–39

  • Flament MH, Kebe I, Clement D, Pieretti I, Risterucci AM, N'Goran JAK, Cilas C, Despréaux D, Lanaud C (2001) Genetic mapping of resistance factors to Phytophthora palmivora in cocoa. Genome 44:79–85

    Article  CAS  PubMed  Google Scholar 

  • Gebhardt C, Valkonen JPT (2001) Organisation of genes controlling disease resistance in the potato genome. Annu Rev Phytopathol 39:79–102

    CAS  PubMed  Google Scholar 

  • Ghislain M, Trognitz B, Herrera MR, Solis J, Casallo G, Vasquez C, Hurtado O, Castillo R, Portal L, Orillo M (2001) Genetic locus associated with field resistance to late blight in offspring of Solanum phujera and S. tuberosum grown under short-day conditions. Theor Appl Genet 103:433–442

    CAS  Google Scholar 

  • Hammond-Kosack KE, Jones JDG (1997) Plant disease resistance genes. Annu Rev Plant Physiol Plant Mol Biol 48:575–607

    CAS  Google Scholar 

  • Kuhn D, Brown JS, Heath M, Schnell RJ (2001) Resistance gene homologues: a shortcut strategy for marker-assisted breeding. In: Cocoa Producers Alliance. Proc Int Wkshp on New Technologies and Cocoa Breeding, Lagos, Nigeria, vol 1:127–134

  • Lanaud C, Risterucci AM, N'Goran J, Clément D, Flament M, Laurent V, Falque M (1995) A genetic linkage map of Theobroma cacao L. Theor Appl Genet 9:987–993

    Google Scholar 

  • Lanaud C, Flament MH, Nyasse S, Risterucci AM, Fargeas D, Kebe I, Sounigo O, Motilal L, Thévenin JM, Paulin D, Ducamp M, Clément D, N'Goran J, Cilas C (2001) Synthesis of studies on the genetic basis of cocoa resistance to Phytophthora using molecular markers. In: Cocoa Producers Alliance. Proc 13th Cocoa Res Conf, Lagos, Nigeria, vol 1, pp 127–134

  • Lefebvre V, Palloix A (1996) Both epistatic and additive effects of QTLs are involved in polygenic induced resistance to disease: a case study, the interaction pepper-Phytophthora capsici Leonian. Theor Appl Genet 93:503–511

    Article  CAS  Google Scholar 

  • Leonards-Schippers G, Gieffers W, Schäfer-Pregl R, Ritter E, Knapp SJ, Salamini F, Gebhardt C (1994) Quantitative resistance to Phytophthora infestans in potato: a case study for QTL mapping in an allogamous plant species. Genetics 137:67–77

    CAS  PubMed  Google Scholar 

  • Leonian LH (1922) Stem and fruit blight of peppers caused by Phytophthora capsici sp. nov. Phytopathology 12:401–408

    Google Scholar 

  • Meyer RC, Milbourne D, Hackett CA, Bradshaw JE, Mc Nichol JW, Waugh (1998) Linkage analysis in tetraploid potato and association of markers with quantitative resistance to late blight (Phytophthora infestans). Mol Gen Genet 259:150–160

    Google Scholar 

  • Nandi S, Subudi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N (1997) Mapping QTLs for submergence tolerance in rice by AFLP analysis and selective genotyping. Mol Gen Genet 255:1–8

    CAS  PubMed  Google Scholar 

  • Ndoumbé M, Bieysse D, Cilas C (2001) Multi-trait selection in a diallel crossing scheme of cocoa. Plant Breed 120:365–367

    Article  Google Scholar 

  • Nyassé S (1997) Etude de la diversité de Phytophthora megakarya et caractérisation de la résistance du cacaoyer (Theobroma cacao L.) à ce pathogène . PhD Thesis, Inst Natl Polytech, de Toulouse

  • Nyassé S, Despréaux D, Cilas C (2002) Validity of a leaf inoculation test to assess the resistance to Phytophthora megakarya in cocoa (Theobroma cacao L.) diallel-mating design. Euphytica 123:395–399

    Article  Google Scholar 

  • Pflieger S, Palloix A, Caranta C, Blattes A, Lefebvre V (2001) Defense response genes co-localize with quantitative disease resistance loci in pepper. Theor Appl Genet 103:920–929

    Article  CAS  Google Scholar 

  • Risterucci AM, Grivet L, N'Goran JAK, Pieretti I, Flament MH, Lanaud C (2000) A high-density linkage map of Theobroma cacao L. Theor Appl Genet 101:948–955

    CAS  Google Scholar 

  • Setiavan A, Koch G, Barnes SR, Jung C (2000) Mapping quantitative trait loci (QTLs) for resistance to Cercospora leaf spot disease (Cercospora beticola Sacc.) in sugar beet (Beta vulgaris L.). Theor Appl Genet 100:1176–1182

    Article  Google Scholar 

  • Tan GY, Tan WK (1990) Additive inheritance of resistance to pod rot caused by Phytophthora palmivora in cocoa. Theor Appl Genet 80:258–264

    Google Scholar 

  • Tautz D, Rentz P (1984) Simple sequences are ubiquitous repetitive components of eucaryotic genome. Nucleic Acids Res 12:4127–4138

    CAS  PubMed  Google Scholar 

  • Tsao PH, Alizadeh A (1988) Recent advances in the taxonomy and nomenclature of the so-called "Phytophthora palmivora " MF4 occurring on cocoa and other tropical crops. In: Proc 10th Int Cocoa Res Conf, 17–23 May 1987, Santo Domingo, pp 441–445

  • Van Ooijen JW, Voorrips RE (2001) JoinMap 3.0, software for the calculation of genetic linkage maps (user manual). University of Wageningen, The Netherlands

  • Van Ooijen JW, Boer MP, Jansen RC, Maliepaard C (2000). MapQTL 4.0: software for the calculation of QTL positions on genetic maps (user manual). University of Wageningen, The Netherlands

  • Vos P, Hogers R, Bleeker M, Reijans M, Van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407–4414

    CAS  PubMed  Google Scholar 

  • Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457–1468

    CAS  PubMed  Google Scholar 

Download references

Acknowledgements

We are grateful to Dr. Brigitte Courtois for critical reading of this manuscript, we also thank CAOBISCO (Association of the chocolate biscuit and confectionery industries of the EEC) for their financial participation in these studies. The experiments comply with the current laws of France in which the experiments were performed.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to A. M. Risterucci.

Additional information

Communicated by H.F. Linskens

Rights and permissions

Reprints and permissions

About this article

Cite this article

Risterucci, A.M., Paulin, D., Ducamp, M. et al. Identification of QTLs related to cocoa resistance to three species of Phytophthora . Theor Appl Genet 108, 168–174 (2003). https://doi.org/10.1007/s00122-003-1408-8

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00122-003-1408-8

Keywords

Navigation