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Isolation and fractionation of soil humin using alkaline urea and dimethylsulphoxide plus sulphuric acid

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Abstract

Humin, the most recalcitrant and abundant organic fraction of soils and of sediments, is a significant contributor to the stable carbon pool in soils and is important for the global carbon budget. It has significant resistance to transformations by microorganisms. Based on the classical operational definition, humin can include any humic-type substance that is not soluble in water at any pH. We demonstrate in this study how sequential exhaustive extractions with 0.1 M sodium hydroxide (NaOH) + 6 M urea, followed by dimethylsulphoxide (DMSO) + 6% (v/v) sulphuric acid (H2SO4) solvent systems, can extract 70–80% of the residual materials remaining after prior exhaustive extractions in neutral and aqueous basic media. Solid-state 13C NMR spectra have shown that the components isolated in the base + urea system were compositionally similar to the humic and fulvic acid fractions isolated at pH 12.6 in the aqueous media. The NMR spectra indicated that the major components isolated in the DMSO + H2SO4 medium had aliphatic hydrocarbon associated with carboxyl functionalities and with lesser amounts of carbohydrate and peptide and minor amounts of lignin-derived components. The major components will have significant contributions from long-chain fatty acids, waxes, to cuticular materials. The isolates in the DMSO + H2SO4 medium were compositionally similar to the organic components that resisted solvation and remained associated with the soil clays. It is concluded that the base + urea system released humic and fulvic acids held by hydrogen bonding or by entrapment within the humin matrix. The recalcitrant humin materials extracted in DMSO + H2SO4 are largely biological molecules (from plants and the soil microbial population) that are likely to be protected from degradation by their hydrophobic moieties and by sorption on the soil clays. Thus, the major components of humin do not satisfy the classical definitions for humic substances which emphasise that these arise from microbial or chemical transformations in soils of the components of organic debris.

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References

  • Aiken GR, McKnight DM, Wershaw RL, MacCarthy P (1985) In: Aiken GR, McKnight DM, Wershaw RL, MacCarthy P (eds) Humic substances in soil, sediment, and water: geochemistry, isolation, and characterization. Wiley, New York, pp 1–9

    Google Scholar 

  • Clapp CE, Hayes MHB (1996) Isolation of humic substance from an agriculture soil using a sequential and exhaustive extraction process. In: Clapp CE, Hayes MHB, Senesi N, Griffith SM (eds) Humic substances and organic matter in soil and water environments: characterization, transformations and interactions. International Humic Substances Society, St. Paul, pp 3–11

    Google Scholar 

  • Clapp CE, Hayes MHB (1999) Characterization of humic substances isolated from clay- and silt-sized fractions of a corn residue-amended agricultural soil. Soil Sci 164:899–913

    Article  CAS  Google Scholar 

  • Clapp CE, Hayes MHB, Simpson AJ, Kingery WL (2005) Chemistry of soil organic matter. In: Tabatabai MA, Sparks DL (eds) Chemical processes in soils, special publication no. 8. Soil Science Society of America, Madison, pp 1–150

    Google Scholar 

  • Deshmukh AP, Simpson AJ, Hadad CM, Hatcher PG (2005) Insights into the structure of cutin and cutan from Agave americana leaf cuticle using HR-MAS NMR spectroscopy. Org Geochem 36:1072–1085

    Article  CAS  Google Scholar 

  • Greenwood NN, Earnshaw A (1997) Chemistry of the elements, 2nd edn. Butterworth-Heinemann, Oxford

    Google Scholar 

  • Hayes MHB (1985) Extraction of humic substances from soil. In: Aiken GR, McKnight DM, Wershaw RL, MacCarthy P (eds) Humic substances in soil, sediment, and water: geochemistry, isolation, and characterization. Wiley, New York, pp 329–362

    Google Scholar 

  • Hayes MHB (2006) Solvent systems for the isolation of organic components from soils. Soil Sci Soc Am J 70:986–994

    Article  CAS  Google Scholar 

  • Hayes MHB, Swift RS, Wardle RE, Brown JK (1975) Humic materials from an organic soil: a comparison of extractants and of properties of extracts. Geoderma 13:231–245

    Article  CAS  Google Scholar 

  • Hayes TM, Hayes MHB, Skjemstad JO, Swift RS (2008) Compositional relationships between organic matter in a grassland soil and its drainage waters. Eur J Soil Sci 59:603–616

    Article  CAS  Google Scholar 

  • Hu WG, Mao J, Xing B, Schmidt-Rohr K (2000) Poly(methylene) crystallites in humic substances detected by nuclear magnetic resonance. Environ Sci Technol 34:530–534

    Article  CAS  Google Scholar 

  • Kelleher BP, Simpson AJ (2006) Humic substances in soils: are they really chemically distinct? Environ Sci Technol 40:4605–4611

    Article  CAS  PubMed  Google Scholar 

  • Kelleher BP, Simpson MJ, Simpson AJ (2006) Assessing the fate and transformation of plant residues in the terrestrial environment using HR-MAS NMR spectroscopy. Geochim Cosmochim Acta 70:4080–4094

    Article  CAS  Google Scholar 

  • Knicker H, DelRio JC, Hatcher PG, Minard RD (2001) Identification of protein remnants in insoluble geopolymers using TMAH thermochemolysis/GC-MS. Org Geochem 32:397–409

    Article  CAS  Google Scholar 

  • Lichtfouse E, Chenu C, Baudin F, Leblond C, Da Silva M, Behar F, Derenne S, Largeau C, Wehrung P, Albrecht P (1998a) A novel pathway of soil organic matter formation by selective preservation of resistant straight-chain biopolymers: chemical and isotope evidence. Org Geochem 28:411–415

    Article  CAS  Google Scholar 

  • Lichtfouse E, Wehrung P, Albrecht P (1998b) Plant wax n-alkanes trapped in soil humin by noncovalent bonds. Naturwissenschaften 85:449–452

    Article  CAS  Google Scholar 

  • Lorenz K, Lal R, Preston CM, Nierop KGJ (2007) Strengthening the soil organic carbon pool by increasing contributions from recalcitrant aliphatic bio(macro)molecules. Geoderma 142:1–10

    Article  CAS  Google Scholar 

  • Malcolm RL, MacCarthy P (1992) Quantitative evaluation of XAD-8 and XAD-4 resins used in tandem for removing organic solutes from water. Environ Int 18:597–607

    Article  CAS  Google Scholar 

  • Novotny EH, Hayes MHB, deAevedo ER, Bonagamba TJ (2006) Characterisation of black carbon-rich samples by 13C solid-state nuclear magnetic resonance. Naturwissenschaften 93:447–450

    Article  CAS  PubMed  Google Scholar 

  • Novotny EH, deAzevedo ER, Bonagamba TJ, Cunha TJF, Madari BE, Benites VD, Hayes MHB (2007) Studies of the compositions of humic acids from Amazonian dark earth soils. Environ Sci Technol 41:400–405

    Article  CAS  PubMed  Google Scholar 

  • Oh-Ishi M, Maeda T (2002) Separation techniques for high-molecular-mass proteins. J Chrom B 771:49–66

    Article  CAS  Google Scholar 

  • Peuravuori J, Lepane V, Lehtonen T, Pihlaja K (2004) Comparative study of separation of aquatic humic substances by capillary zone electrophoresis using uncoated, polymer coated and gel filled capillaries. J Chromatography A 1023:129–142

    Article  CAS  Google Scholar 

  • Piccolo A (2001) The supramolecular structure of humic substances. Soil Sci 166:810–832

    Article  CAS  Google Scholar 

  • Piccolo A, Conte P, Trivellone E, van Lagen B, Buurman P (2002) Reduced heterogeneity of a lignite humic acid by preparative HPSEC following interaction with an organic acid. Characterization of size-separates by Pyr-GC-MS and 1H-NMR spectroscopy. Environ Sci Technol 36:76–84

    Article  CAS  PubMed  Google Scholar 

  • Rice JA (2001) Humin Soil Sci 166:848–857

    Article  CAS  Google Scholar 

  • Rice JA, MacCarthy P (1988) Comments on the literature of the humin fraction of humus. Geoderma 43:65–73

    Article  CAS  Google Scholar 

  • Rice JA, MacCarthy P (1992) Disaggregation and characterization of humin. Sci Total Environ 117(118):83–88

    Google Scholar 

  • Simpson AJ, Kingery WL, Hayes MHB, Spraul M, Humpfer E, Dvortsak P, Kerssebaum R, Godejohann M, Hofmann M (2002) Molecular structures and associations of humic substances in the terrestrial environment. Naturwissenschaften 89:84–88

    Article  CAS  PubMed  Google Scholar 

  • Simpson AJ, Kingery WL, Hatcher PG (2003) The identification of plant derived structures in humic materials using three-dimensional NMR spectroscopy. Environ Sci Technol 37:337–342

    Article  CAS  PubMed  Google Scholar 

  • Simpson AJ, Simpson MJ, Smith E, Kelleher BP (2007a) Microbially derived inputs to soil organic matter: are current estimates too low? Environ Sci Technol 41:8070–8076

    Article  CAS  PubMed  Google Scholar 

  • Simpson AJ, Song G, Smith E, Lam B, Novotny EH, Hayes MHB (2007b) Unravelling the structural components of soil humin by use of solution-state nuclear magnetic resonance spectroscopy. Environ Sci Technol 41:876–883

    Article  CAS  PubMed  Google Scholar 

  • Song G, Novotny EH, Simpson AJ, Clapp CE, Hayes MHB (2008) Sequential exhaustive extraction and characterizations, by solid and solution state NMR, of the humic, including humin, components in exhaustive extracts from a Mollisol soil. Eur J Soil Sci 59:505–516

    Article  CAS  Google Scholar 

  • Spaccini R, Piccolo A, Haberhauer G, Gerzabek MH (2000) Transformation of organic matter from maize residues into labile and humic fractions of three European soils as revealed by 13C distribution and CPMAS-NMR spectra. Eur J Soil Sci 51:583–594

    Google Scholar 

  • Stevenson FJ (1994) Humus chemistry; genesis, composition, reaction, 2nd edn. Wiley, NY

    Google Scholar 

  • Swift RS (1996) Organic matter characterization. In: Sparks DL (ed) Methods of soil analysis. Part 3. Chemical methods. Soil Science Society of America and American Society of Agronomy, Madison, pp 1011–1069

    Google Scholar 

  • Tobi D, Elber R, Thirumalai D (2003) The dominant interaction between peptide and urea is electrostatic in nature: a molecular dynamics simulation study. Biopolymers 68:359–369

    Article  CAS  PubMed  Google Scholar 

  • Tsutsuki K, Kuwatsuka S (1992) Characterization of humin-metal complexes in a buried volcanic ash soil profile and a peat soil. Soil Sci Plant Nutr 38:297–306

    CAS  Google Scholar 

  • Wang K, Xing B (2005) Chemical extractions affect the structure and phenanthrene sorption of soil humin. Environ Sci Technol 39(21):8333–8340

    Article  CAS  PubMed  Google Scholar 

  • Zhang D, Lu S (1987) An assessment of the separation and analysis of humic substances by isoelectric focusing (IEF) method. Sci Total Environ 62:89–96

    Article  CAS  Google Scholar 

Download references

Acknowledgement

The authors acknowledge support from the Science Foundation Ireland (SFI), the Environmental Protection Agency (EPA) Ireland, and the Irish Research Council for Science, Engineering and Technology (IRCSET).

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Correspondence to Guixue Song or Michael H. B. Hayes.

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Song, G., Hayes, M.H.B., Novotny, E.H. et al. Isolation and fractionation of soil humin using alkaline urea and dimethylsulphoxide plus sulphuric acid. Naturwissenschaften 98, 7–13 (2011). https://doi.org/10.1007/s00114-010-0733-4

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  • DOI: https://doi.org/10.1007/s00114-010-0733-4

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