Skip to main content
Log in

Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces

  • Full Paper
  • Published:
Mycoscience

Abstract

Species assigned to the genera Debaryomyces, Lodderomyces, Spathaspora, and Yamadazyma, as well as selected species of Pichia and Candida that also form coenzyme Q-9, were phylogenetically analyzed from the combined sequences of the D1/D2 domains of the large subunit and the nearly complete small subunit rRNA genes. Species assigned to Debaryomyces partitioned into three clades and species assigned to Pichia were distributed among six clades. These well-supported clades were interpreted as genera, and from this analysis, the following new genera are proposed: Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces. The genus Schwanniomyces was reinstated and emended, and the genus Yamadazyma was phylogenetically defined. From this study, 23 new combinations and 3 new ranks are proposed. The preceding genera are members of a single, large clade, and it is proposed to delineate this clade as the new family Debaryomycetaceae.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1

Similar content being viewed by others

References

  • Bai F-Y (1996) Separation of Candida fermentati com. nov. from Candida guilliermondii by DNA base composition and electrophoretic karyotyping. Syst Appl Microbiol 19:178–181

    CAS  Google Scholar 

  • Billon-Grand G (1985) Coenzyme Q de quelques espèces du genre Pichia. Détermination qualitative et quantitative. Mycopathologia 90:101–106

    Article  CAS  PubMed  Google Scholar 

  • Billon-Grand G (1989) A new ascosporogenous yeast genus: Yamadazyma gen. nov. Mycotaxon 35:201–204

    Google Scholar 

  • Fitzpatrick DA, Logue ME, Stajich JE, Butler G (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6:99–113

    Article  PubMed  CAS  Google Scholar 

  • Golubev WI, Blagodatskaya VM, Suetin SO, Trotsenko RS (1981) Pichia inositovora and Candida paludigena, two new species of yeasts isolated from peat. Int J Syst Bacteriol 31:91–96

    Article  Google Scholar 

  • James SA, Cai J, Roberts IN, Collins MD (1997) A phylogenetic analysis of the genus Saccharomyces based on 18S rRNA gene sequences: description of Saccharomyces kunashirensis sp. nov. and Saccharomyces martiniae sp. nov. Int J Syst Bacteriol 47:453–460

    CAS  PubMed  Google Scholar 

  • James TY, Kauff F, Schoch C, Matheny B, Hofstetter V, Cox CJ, Celio G, Guiedan C, Fraker E, Miadlikowska J, Lumbsh T, Rauhut A, Reeb V, Arnold A, Amtoft A, Stajich JE, Hosaka K, Sung G, Johnson D, O’Rourke B, Crockett M, Binder M, Curtis JM, Slot JC, Wang Z, Wilson AW, Schueller A, Longcore JE O, Donnell K, Mozley-Standridge S, Porter D, Letcher PM, Powell MJ, Taylor JW, White MM, Griffith GW, Davies DR, Humber RA, Morton JB, Sugiyama J, Rossman AY, Rogers JD, Pfister DH, Hewitt D, Hansen K, Hambleton S, Shoemaker RA, Kohlmeyer J, Volkmann-Kohlmeyer B, Spotts RA, Serdani M, Crous PW, Hughes KW, Matsuura K, Langer E, Langer G, Untereiner WA, Lucking R, Budel B, Geiser DM, Aptroot DM, Diederich P, Schmitt I, Schultz M, Yahr R, Hibbett DS, Lutzoni F, Mclaughlin DJ, Spatafora JW, Vilgalys R (2006) Reconstructing the early evolution of fungi using a six-gene phylogeny. Nature (Lond) 443:818–822

    Article  CAS  Google Scholar 

  • Kodama K (1975) New species of Pichia isolated from tree exudates in Japan. J Ferment Technol 53:626–630

    Google Scholar 

  • Kurtzman CP (1984) Resolution of varietal relationships within the species Hansenula anomala, Hansenula bimundalis and Pichia nakazawae through comparisons of DNA relatedness. Mycotaxon 19:271–279

    Google Scholar 

  • Kurtzman CP (1990) Candida shehatae: genetic diversity and phylogenetic relationships with other xylose-fermenting yeasts. Antonie van Leeuwenhoek 57:215–222

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP (1998) Pichia E.C. Hansen emend. Kurtzman. In: Kurtzman CP, Fell JW (eds) The yeasts, a taxonomic study, 4th edn. Elsevier, Amsterdam, pp 273–352

    Google Scholar 

  • Kurtzman CP (2003) Phylogenetic circumscription of Saccharomyces, Kluyveromyces and other members of the Saccharomycetaceae, and the proposal of the new genera Lachancea, Nakaseomyces, Naumovia, Vanderwaltozyma and Zygotorulaspora. FEMS Yeast Res 4:233–245

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP (2006) New species and new combinations in the yeast genera Kregervanrija gen. nov., Saturnispora and Candida. FEMS Yeast Res 6:288–297

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Robnett CJ (1991) Phylogenetic relationships among species of Saccharomyces, Schizosaccharomyces, Debaryomyces and Schwanniomyces determined from partial ribosomal RNA sequences. Yeast 7:61–72

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Robnett CJ (1994) Orders and families of ascosporogenous yeasts and yeast-like taxa compared from ribosomal RNA sequence similarities. In: Hawksworth DL (ed) Ascomycete systematics: problems and perspectives in the nineties. Plenum Press, New York, pp 249–258

    Google Scholar 

  • Kurtzman CP, Robnett CJ (1998) Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie van Leeuwenhoek 73:331–371

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Robnett CJ (2003) Phylogenetic relationships among yeasts of the “Saccharomyces complex” determined from multigene sequence analyses. FEMS Yeast Res 3:417–432

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Robnett CJ (2007) Multigene phylogenetic analysis of the Trichomonascus, Wickerhamiella and Zygoascus yeast clades, and the proposal of Sugiyamaella gen. nov. and 14 new species combinations. FEMS Yeast Res 7:141–151

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Bothast RJ, Van Cauwenberge JE (1982) Conversion of d-xylose to ethanol by the yeast Pachysolen tannophilus. U.S. patent 4359534

  • Kurtzman CP, Albertyn J, Basehoar-Powers E (2007) Multigene phylogenetic analysis of the Lipomycetaceae and the proposed transfer of Zygozyma species to Lipomyces and Babjevia anomala to Dipodascopsis. FEMS Yeast Res 7:1027–1034

    Article  CAS  PubMed  Google Scholar 

  • Kurtzman CP, Robnett CJ, Basehoar-Powers E (2008) Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov. FEMS Yeast Res 8:939–954

    Article  CAS  PubMed  Google Scholar 

  • Nakase T, Suzuki M (1985) Taxonomic studies on Debaryomyces hansenii (Zopf) Lodder et Kreger-van Rij and related species. I. Chemotaxonomic investigations. J Gen Appl Microbiol 31:49–69

    Article  CAS  Google Scholar 

  • Nakase T, Suzuki M, Phaff HJ, Kurtzman CP (1998) Debaryomyces Lodder & Kreger-van Rij Nom. Cons. In: Kurtzman CP, Fell JW (eds) The yeasts, a taxonomic study, 4th edn. Elsevier, Amsterdam, pp 157–173

    Google Scholar 

  • Nguyen NH, Suh S-O, Marshall CJ, Blackwell M (2006) Morphological and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res 110:1232–1241

    Article  PubMed  Google Scholar 

  • Passoth V, Hansen M, Klinner U, Emeis CC (1992) The electrophoretic banding pattern of the chromosomes of Pichia stipitis and Candida shehatae. Curr Genet 22:429–431

    Article  CAS  PubMed  Google Scholar 

  • Price CW, Fuson GB, Phaff HJ (1978) Genome comparison in yeast systematics: delimitation of species within the genera Schwanniomyces, Saccharomyces, Debaryomyces and Pichia. Microbiol Rev 42:161–193

    CAS  PubMed  Google Scholar 

  • Prillinger H, Molnár O, Eliskases-Lechner F, Lopandic K (1999) Phenotypic and genotypic identification of yeasts from cheese. Antonie van Leeuwenhoek 75:267–283

    Article  CAS  PubMed  Google Scholar 

  • Suh S-O, Blackwell M (2004) Three new beetle-associated yeast species in the Pichia guilliermondii clade. FEMS Yeast Res 5:87–95

    Article  CAS  PubMed  Google Scholar 

  • Suzuki M, Suh S-O, Sugita T, Nakase T (1999) A phylogenetic study on galactose-containing Candida species based on 18S ribosomal DNA sequences. J Gen Appl Microbiol 45:229–238

    Article  CAS  PubMed  Google Scholar 

  • Swofford DL (1998) PAUP*4.0. Phylogenetic analysis using parsimony. 4.0. Sinauer Associates, Sunderland

    Google Scholar 

  • Toivola A, Yarrow D, van den Bosch E, van Dijken JP, Scheffers WA (1984) Alcoholic fermentation of d-xylose by yeasts. Appl Environ Microbiol 47:1221–1223

    CAS  PubMed  Google Scholar 

  • van der Walt JP, Johannsen E (1980) Debaryozyma yamadae spec. nov. (Saccharomycetaceae). J Gen Appl Microbiol 26:217–222

    Article  Google Scholar 

  • Vaughan-Martini A, Kurtzman CP, Meyer SA, O’Neill EB (2005) Two new species in the Pichia guilliermondii clade: Pichia caribbica sp. nov., the ascosporic state of Candida fermentati, and Candida carpophila comb. nov. FEMS Yeast Res 5:463–469

    Article  CAS  PubMed  Google Scholar 

  • Yamada Y, Okada T, Ueshima O, Kondo K (1973) Coenzyme Q system in the classification of the ascosporogenous genera Hansenula and Pichia. J Gen Appl Microbiol 19:189–208

    Article  CAS  Google Scholar 

  • Yamada Y, Maeda K, Mikata K (1994) The phylogenetic relationships of the hat-shaped ascospore-forming, nitrate-assimilating Pichia species, formerly classified in the genus Hansenula Sydow et Sydow, based on the partial sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae): the proposals of three new genera, Ogataea, Kuraishia, and Nakazawaea. Biosci Biotechnol Biochem 58:1245–1257

    Article  CAS  PubMed  Google Scholar 

  • Yamada Y, Matsuda M, Maeda K, Mikata K (1995a) The phylogenetic relationships of methanol-assimilating yeasts based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Komagataella gen. nov. (Saccharomycetaceae). Biosci Biotechnol Biochem 59:439–444

    Article  CAS  PubMed  Google Scholar 

  • Yamada Y, Suzuki T, Matsuda M, Mikata K (1995b) The phylogeny of Yamadazyma ohmeri (Etchells et Bell) Billon-Grand based on partial sequences of 18S and 26S ribosomal RNAs: the proposal of Kodamaea gen. nov. (Saccharomycetaceae). Biosci Biotechnol Biochem 59:1172–1174

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgments

Christie J. Robnett kindly provided the new gene sequences used in this study, and we are grateful to Don Fraser for preparation of the final figure. We also thank Dr. Gen Okada for his valuable comments on nomenclature. Mention of company names or trade products does not imply that they are endorsed or recommended by the U.S. Department of Agriculture over other companies or similar products not mentioned.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Cletus P. Kurtzman.

About this article

Cite this article

Kurtzman, C.P., Suzuki, M. Phylogenetic analysis of ascomycete yeasts that form coenzyme Q-9 and the proposal of the new genera Babjeviella, Meyerozyma, Millerozyma, Priceomyces, and Scheffersomyces . Mycoscience 51, 2–14 (2010). https://doi.org/10.1007/s10267-009-0011-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10267-009-0011-5

Keywords

Navigation