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Expressed sequence tags and mRNA expression levels of tagged cDNAs from watermelon anthers and developing seeds

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Abstract

To understand the molecular events that occur during reproductive organ development and to provide genetic resources for molecular breeding, we generated 328 expressed sequence tags (ESTs) from randomly selected clones of four watermelon cDNA libraries. These libraries were prepared from young and mature anthers, as well as the seed coat and inner seed tissues. EST clones found in the young anthers and inner seed tissues showed similarity with genes related to development and signal transduction. We could deduce that, especially in the developing inner seed tissues, important morphological processes were associated exclusively with seed and embryo development In addition, seed metabolism was tailored toward the accumulation of economically valuable storage compounds such as lipids. In the seed coat, EST clones showed similarity with genes that influence the transport or conversion of nutrients such as porin, sucrose synthase, L-asparaginase, and arginine decarboxylase. We also selected two cDNA clones from each of the four classes of ESTs for studying expression levels and patterns in the various organs. Among those eight clones, three (An88, Is124, and Sc68) were expressed preferentially in their particular organ.

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Abbreviations

DAF:

days after pollination

EST:

expressed sequence tag

Literature Cited

  • Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res25: 3389–3402

    Article  PubMed  CAS  Google Scholar 

  • Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res10: 986–995

    Google Scholar 

  • Cooke R, Raynal M, Laudie M, Grellet F, Delseny M, Morris P-C, Guerrier D, Giraudat J, Quigley F, Clabault G, Li Y-F, Mache R, Krivitzky M, Gy J-J, Kreis M, Lecharny A, Parmentier Y, Marbach J, Fleck J, Clement B, Philipps G, Herve C, Bardet C, Tremousaygue D, Lescure B, Lacomme C, Roby D, Jourjon M-F, Chabrier P, Charpenteau J-L, Desprez T, Amselem J, Chiapello H, Hofte H (1996) Further progress towards a catalogue of allArabidopsis genes: analysis of a set of 5000 nonredundant ESTs. Plant J9: 101–124

    Article  PubMed  CAS  Google Scholar 

  • DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science278: 680–686

    Article  PubMed  CAS  Google Scholar 

  • Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claverie JM (1999) Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res9: 950–959

    Article  PubMed  CAS  Google Scholar 

  • Keith CS, Hoang DO, Barrett BM, Feigelman B, Nelson MC, Thai H, Baysdorfer C (1993) Partial sequencing analysis of 130 randomly selected maize cDNA clones. Plant Physiol101: 329–332

    Article  PubMed  CAS  Google Scholar 

  • Loftus SK, Chen Y, Gooden G, Ryan JF, Birznieks G, Hilliard M, Baxevanis AD, Bittner M, Meltzer P, Trent J, Pavan W (1999) Informatic selection of a neural crestmelanocyte cDNA set for microarray analysis. Proc Natl Acad Sci USA96: 9277–9280

    Article  PubMed  CAS  Google Scholar 

  • Mekhedov S, de llarduya OM, Ohlrogge J (2000) Toward a functional catalog of the plant genome. A survey of genes for lipid biosynthesis. Plant Physiol122: 389–402

    Article  PubMed  CAS  Google Scholar 

  • Moon YH, Chae S, Jung JY, An G (1998) Expressed sequence tags of radish flower buds and characterization of a CONSTANS LIKE 1 gene. Mol Cells4: 452–458

    Google Scholar 

  • Newman T, de Bruijn FJ, Green P, Keegstra K, Kende H, Mclntosh L, Ohlrogge J, Raikhel N, Somerville S, Thomashow M, Retzel E, Somerville C. (1994) Genes galore: A summary of methods for accessing results from large-scale partial sequencing of anonymousArabidopsis cDNA clones. Plant Physiol106: 1241–1255

    Article  PubMed  CAS  Google Scholar 

  • Park YS, Kwak JM, Kwon OY, Kim YS, Lee DS, Cho MJ, Lee HH, Nam HG (1993) Generation of expressed sequence tags of random root cDNA clones ofBrassica napus by single-run partial sequencing. Plant Physiol103: 359–370

    Article  PubMed  CAS  Google Scholar 

  • Rafalski JA, Hanafey M, Miao GH, Ching A, Lee JM, Dolan M, Tingey S (1998) New experimental and computational approaches to the analysis of gene expression. Acta Biochim Pol45: 929–934

    PubMed  CAS  Google Scholar 

  • Ruan Y, Gilmore J, Conner T (1998) TowardsArabidopsis genome analysis: Monitoring expression profiles of 1400 genes using cDNA microarrays. Plant J15: 821–833

    Article  PubMed  CAS  Google Scholar 

  • Sasaki T, Song J, Koga-Ban Y, Matsui E, Fang F, Higo H, Nagasaki H, Hori M, Miya M, Murayama-Kayano E, Takiguchi T, Takasuga A, Niki T, Ishimaru K, Lkeda H, Yamamoto Y, Mukai Y, Ohta I, Miyadera N, Havukkala I, Minobe Y (1994) Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library. Plant J6: 615–624

    Article  PubMed  CAS  Google Scholar 

  • Sung SK, Jeong DH, Nam J, Kim SH, Kim SR, An G (1998) Expressed sequence tags of fruits, peels, and carpels and analysis of mRNA expression levels of the tagged cDNAs of fruits from the Fuji apple. Mol Cells8: 565–577

    PubMed  CAS  Google Scholar 

  • White JA, Todd J, Newman T, Focks N, Girke T, de llarduya OM, Jaworski JG, Ohlrogge JB, Benning C (2000) A new set ofArabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil. Plant Physiol124: 1582–1594

    Article  PubMed  Google Scholar 

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Correspondence to Gynheung An.

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Kim, J., jun, SH., Lee, J. et al. Expressed sequence tags and mRNA expression levels of tagged cDNAs from watermelon anthers and developing seeds. J. Plant Biol. 44, 172–177 (2001). https://doi.org/10.1007/BF03030236

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  • DOI: https://doi.org/10.1007/BF03030236

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