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Preparation method forEscherichia coli S30 extracts completely dependent upon tRNA addition to catalyze cell-free protein synthesis

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Abstract

A simple method for depletingE. coli S30 extracts of endogenous tRNA has been developed. An ethanolamine-Sepharose® column equilibrated with water selectively captured the tRNA molecules inE. coli S30 extracts. As a result, S30 extracts filtered through this column became completely dependent upon the addition of exogenous tRNA to mediate cell-free protein synthesis reactions. We anticipate that the procedures developed and described will be particularly useful forin vitro suppression reaction studies designed to introduce unnatural amino acids into protein molecules.

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References

  1. Noren, C. J., S. J. Anthony-Cahill, M. C. Griffith, and P. G. Schultz (1989) A general method for site-specific incorporation of unnatural amino acids into proteins.Science 244: 182–188.

    Article  CAS  Google Scholar 

  2. Cook, S. N., W. E. Jack, X. Xiong, L. E. Danley, J. A. Ellman, P. G. Schultz, and C. J. Noren (1995) Photochemically initiated protein splicing.Angew. Chem. Int. Edit. 34: 1629–1630.

    Article  CAS  Google Scholar 

  3. Miller, J. C., S. K. Silverman, P. M. England, D. A. Dougherty, and H. A. Lester (1998) Flash decaging of tyrosine sidechains in an ion channel.Neuron 20: 619–624.

    Article  CAS  Google Scholar 

  4. England, P. M., H. A. Lester, N. Davidson, and D. A. Dougherty (1997) Site-specific, photochemical proteolysis applied to ion channelsin vivo.Proc. Natl. Acad. Sci. USA 94: 11025–11030.

    Article  CAS  Google Scholar 

  5. Pollitt, S. K., and P. G. Schultz (1998) A phorochemical switch for controlling protein-protein interactions.Angew. Chem. Int. Edit. 37: 2104–2107.

    Article  CAS  Google Scholar 

  6. Cohen, B. E., T. B. McAnaney, E. S. Park, Y. N. Jan, S. G. Boxer, and L. Y. Jan (2002) Probing protein electrostatics with a synthetic fluorescent amino acid.Science 296: 1700–1703.

    Article  CAS  Google Scholar 

  7. Steward, L. E., C. S. Collins, M. A. Gilmore, J. E. Carlson, J. B. A. Ross, and A. R. Chamberlin (1997)In vitro site-specific incorporation of fluorescent probes into beta-galactosidase.J. Am. Chem. Soc. 119: 6–11.

    Article  CAS  Google Scholar 

  8. Turcatti, G., K. Nemeth, M. D. Edgerton, U. Meseth, F. Talabot, M. Peitsch, J. Knowles, H. Vogel, and A. Chollet (1996) Probing the structure and function of the tachykinin neurokinin-2 receptor through biosynthetic incorporation of fluorescent amino acids at specific sites.J. Biol. Chem. 271: 19991–19998.

    Article  CAS  Google Scholar 

  9. Taki, M., T. Hohsaka, H. Murakami, K. Taira, and M. Sisido (2002) Position-specific incorporation of a fluorophore-quencher pair into a single streptavidin through orthogonal four-base codon/anticodon pairs.J. Am. Chem. Soc. 124: 14586–14590.

    Article  CAS  Google Scholar 

  10. Cornish, V. W., D. R. Benson, C. A. Altenbach, K. Hideg, W. L. Hubbell, and P. G. Schultz (1994) Site-specific incorporation of biophysical probes into proteins.Proc. Natl. Acad. Sci. USA 91: 2910–2914.

    Article  CAS  Google Scholar 

  11. Cornish, V. W., K. M. Hahn, and P. G. Schultz (1996) Site-specific protein modification using a ketone handle.J. Am. Chem. Soc. 118: 8150–8151.

    Article  CAS  Google Scholar 

  12. Wang, L., Z. W. Zhang, A. Brock, and P. G. Schultz (2003) Addition of the keto functional group to the genetic code ofEscherichia coli.Proc. Natl. Acad. Sci. USA 100: 56–61.

    Article  CAS  Google Scholar 

  13. Wang, L., A. Brock, B. Herberich, and P. G. Schultz (2001) Expanding the genetic code ofEscherichia coli.Science 292: 498–500.

    Article  CAS  Google Scholar 

  14. Chin, J. W., T. A. Cropp, J. C. Anderson, M. Mukherji, Z. W. Zhang, and P. G. Schultz (2003) An expanded eukaryotic genetic code.Science 301: 964–967.

    Article  CAS  Google Scholar 

  15. Taira, H., T. Hohsaka, and M. Sisido (2006)in vitro selection of tRNAs for efficient four-base decoding to incorporate non-natural amino acids into proteins in anEscherichia coli cell-free translation system.Nucleic Acids Res. 34: 1653–1662.

    Article  CAS  Google Scholar 

  16. Hohsaka, T., Y. Ashizuka, H. Murakami, and M. Sisido (2001) Five-base codons for incorporation of nonnatural amino acids into proteins.Nucleic Acids Res. 29: 3646–3651.

    Article  CAS  Google Scholar 

  17. Kanda, T., K. Takai, T. Hohsaka, M. Sisido, and H. Takaku (2000) Sense codon-dependent introduction of unnatural amino acids into multiple sites of a protein.Biochem. Biophys. Res. Commun. 270: 1136–1139.

    Article  CAS  Google Scholar 

  18. Hohsaka, T., Y. Ashizuka, H. Taira, H. Murakami, and M. Sisido (2001) Incorporation of nonnatural amino acids into proteins by using various four-base codons in anEscherichia coli in vitro translation system.Biochemistry 40: 11060–11064.

    Article  CAS  Google Scholar 

  19. Anderson, J. C., T. J. Magliery, and P. G. Schultz (2002) Exploring the limits of codon and anticodon size.Chem. Biol. 9: 237–244.

    Article  CAS  Google Scholar 

  20. Anderson, J. C., N. Wu, S. W. Santoro, V. Lakshman, D. S. King, and P. G. Schultz (2004) An expanded genetic code with a functional quadruplet codon.Proc. Natl. Acad. Sci. USA 101: 7566–7571.

    Article  CAS  Google Scholar 

  21. Frankel, A., and R. W. Roberts (2003)In vitro selection for sense codon suppression.RNA 9: 780–786.

    Article  CAS  Google Scholar 

  22. Jackson, R. J., S. Napthine, and I. Brierley (2001) Development of a tRNA-dependentin vitro translation system.RNA 7: 765–773.

    Article  CAS  Google Scholar 

  23. Son, J. M., J. H. Ahn, M. Y. Hwang, C. G. Park, C. Y. Choi, and D. M. Kim (2006) Enhancing the efficiency of cell-free protein synthesis through the polymerase-chainreaction-based addition of a translation enhancer sequence and thein situ removal of the extra amino acid residues.Anal. Biochem. 351: 187–192.

    Article  CAS  Google Scholar 

  24. Kim, D. M., T. Kigawa, C. Y. Choi, and S. Yokoyama (1996) A highly efficient cell-free protein synthesis system fromEscherichia coli.Eur. J. Biochem. 239: 881–886.

    Article  CAS  Google Scholar 

  25. Nakano, H., R. Okumura, C. Goto, and T. Yamane (2002)In vitro combinatorial mutagenesis of the 65th and 222nd positions of the green fluorescent protein ofAequarea victoria.Biotechnol. Bioprocess Eng. 7: 311–315.

    Article  CAS  Google Scholar 

  26. Lee, C.-S., S.-H. Lee, Y.-G. Kim, C.-H. Choi, Y.-K. Kim, and B.-G. Kim (2006) Biochemical reactions on a micro-fluidic chip based on a precise fluidic handling method at the nanoliter scale.Biotechnol. Bioprocess Eng. 11: 146–153.

    Article  Google Scholar 

  27. Park, Y. S., S. H. Hwang, and C.-Y. Choi (2005) Construction of CpG motif-enriched DNA vaccine plasmids for enhanced early immune response.Biotechnol. Bioprocess Eng. 10: 29–33.

    Article  CAS  Google Scholar 

  28. Kim, D.-M., C.-Y. Choi, J.-H. Ahn, T.-W. Kim, N.-Y. Kim, I.-S. Oh, and C.-G. Park (2006) Development of a rapid and productive cell-free protein synthesis system.Biotechnol. Bioprocess Eng. 11: 235–239.

    Article  CAS  Google Scholar 

  29. Schagger, H., and G. von Jagow (1987) Trieine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.Anal. Biochem. 166: 368–379.

    Article  CAS  Google Scholar 

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Correspondence to Dong-Myung Kim.

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Ahn, JH., Hwang, MY., Oh, IS. et al. Preparation method forEscherichia coli S30 extracts completely dependent upon tRNA addition to catalyze cell-free protein synthesis. Biotechnol. Bioprocess Eng. 11, 420–424 (2006). https://doi.org/10.1007/BF02932309

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  • DOI: https://doi.org/10.1007/BF02932309

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