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The influence of climate on mechanistic pathways that affect lower food web production in Northern San Francisco Bay estuary

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Abstract

Significant coherence among time series of environmental and biological production variables suggested mechanistic pathways through which climate contributed to the downward shift in estuarine production (biomass) in northern San Francisco Bay estuary, 1975–1993. Climate directly and indirectly affected physical processes in the estuary through precipitation and its subsequent impact on streamflow and physical variables affected by streamflow. Climate also directly influenced air temperature and wind velocity. The influence if climate was evaluated through a climate index based on sea level pressure. A shift in this climate index in the early 1980s coincided with changes in many environmental variables including water transparency, water temperature, wind velocity, and rainfall. These physical changes were accompanied by a decrease in diatom, total zooplankton, andNeomysis mercedis carbon at the base of the food web throughout the estuary. Box-Jenkins time series coherence analysis was used to quantify associations among these physical, chemical, and biological time series for nine regions of the estuary. These associations were used to develop a conceptual model of mechanistic pathways that directly linked food web carbon production to climate. Strong coherence among diatom, zooplankton, andN. mercedis carbon time series suggested climate also had an indirect impact on food web production through trophic cascade. Differing mechanistic pathways among the nine regions of the estuary suggested climate was an important contributor to the spatial variability in total food web production and trophic structure.

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Literature Cited

  • Aebischer, N. J., J. C. Coulson, andJ. M. Colebrook. 1990. Parallel long-term trends across four marine trophic levels and weather.Nature 347:753–755.

    Article  Google Scholar 

  • Alpine, A. E. andJ. E. Cloern. 1992. Trophic interactions and direct physical effects control phytoplankton biomass and production in an estuary.Limnology and Oceanography 37:946–955.

    Google Scholar 

  • Arthur, J. F., M. D. Ball, andS. Y. Baughman. 1996. Summary of federal and state water project environmental impacts in the San Francisco Bay-Delta estuary, California, p. 445–495.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem. Pacific Division of the American Association for the Advancement of Science, San Francisco, California.

    Google Scholar 

  • Azam, F., T. Fenchel, J. G. Field, J. S. Gray, L. A. Meyer-Fiel, andF. Thingstad. 1983. Ecologic role of water column microbes in the sea.Marine Ecology Progress Series 10:257–263.

    Article  Google Scholar 

  • Bennett, W. A. andP. B. Moyle 1996. Where have all the fishes gone? Interactive factors producing fish declines in the Sacramento-San Joaquin estuary, p. 519–542.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem. Pacific Division of the American Association for the Advancement of Science, San Francisco, California.

    Google Scholar 

  • Botsford, L. W., J. C. Castilla, andC. H. Peterson. 1997. The management of fisheries and marine ecosystems.Science 277: 509–522.

    Article  CAS  Google Scholar 

  • Box, G. E. P. andG. M. Jenkins. 1976. Time Series Analysis: Forecasting and Control, revised edition. Holden-Day, Oakland, California.

    Google Scholar 

  • Calbet, A. 2001. Mesozooplankton grazing effect on primary production: A global comparative analysis in marine ecosystems,Limnology and Oceanography 46:1824–1830.

    Google Scholar 

  • Carpenter, S. R., S. G. Fisher, N. B. Grimm, andJ. Kitchell. 1992. Global change and freshwater ecosystems.Annual Review of Ecology and Systematics 23:119–139.

    Article  Google Scholar 

  • Carpenter, S. R., J. F. Kitchell, andJ. R. Hodgson. 1985. Cascading trophic interactions and lake productivity.BioScience 35:634–639.

    Article  Google Scholar 

  • Cayan, D. R. andD. H. Peterson. 1989. The influence of north Pacific atmospheric circulation on streamflow in the west, p. 375–397.In D. H. Peterson (ed.), Aspects of Climate Variability in the Pacific and the Western Americas. American Geophysical Union, Washington, D.C.

    Google Scholar 

  • Cloern, J. E. 1987. Turbidity as a control on phytoplankton carbon and productivity in estuaries.Continental and Shelf Research 7:1367–1381.

    Article  Google Scholar 

  • Cloern, J. E. andF. H. Nichols. 1985. Time scales and mechanisms of estuarine variability, a synthesis from studies of San Francisco Bay.Hydrobiologia 129:229–237.

    Article  Google Scholar 

  • Conley, D. S. andT. C. Malone. 1992. Annual cycle of dissolved silicate in Chesapeake Bay: Implications for the production of phytoplankton carbon.Marine Ecology Progress Series 81:121–128.

    Article  CAS  Google Scholar 

  • Dettinger, M. D. andD. R. Cayan. 1995. Large-scale atmospheric forcing of recent trends toward early snowmelt runoff in California.Journal of Climate 8:606–623.

    Article  Google Scholar 

  • Ebbesmeyer, C. C., D. R. Cayan, D. R. McLain, F. H. Nichols, D. H. Peterson, andK. T. Redmond. 1991. 1976 step in the Pacific climate: Forty environmental changes between 1968–1975 and 1977–1984, p. 115–126.In J. L. Betancourt and V. L. Tharp (eds.), Proceedings of the 7th Annual Pacific, Climate (PACLIM) Workshop, April 1990. Technical Report 26, Interagency Ecological Studies Program, California Department of Water Resources, Sacramento, California.

    Google Scholar 

  • Foe, C. andA. W. Knight. 1985. The effect of phytoplankton and suspended sediment on the growth ofCorbicula fluminea.Hydrobologia 127:105–115.

    Article  Google Scholar 

  • Gerten, D. andR. Adrian. 2000. Climate-driven changes in spring plankton and the sensitivity of shallow polymictic lakes to the North Atlantic Oscillation.Limnology and Oceanography 45:1058–1066.

    Google Scholar 

  • Goldman, C. R., A. D. Jassby, andT. Powell. 1989. Interannual fluctuations in primary production: Meteorological forcing at two subalpine lakes.Limnology and Oceanography 34:310–323.

    CAS  Google Scholar 

  • Hansen, B. H., P. K. Bjornsen, andP. J. Hansen. 1994. The size ratio between planktonic predators and their prey.Limnology and Oceanography 39:395–403.

    Google Scholar 

  • Harris, G. P. 1986. Phytoplankton Ecology, Chapman and Hall, London.

    Google Scholar 

  • Jassby, A. D., J. E. Cloern, andB. E. Cole. 2002. Annual primary production: Patterns and mechanisms of change in a nutrient-rich tidal ecosystem.Limnology and Oceanography 47: 698–712.

    Google Scholar 

  • Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armor, J. E. Cloern, T. M. Powell, J. R. Schubel, andT. J. Vendlinski. 1995. Isohaline position as a habitat indicator for estuarine populations.Ecological Applications 5:272–289.

    Article  Google Scholar 

  • Jassby, A. D., J. R. Koseff, andS. G. Monismith. 1996. Processes underlying phytoplankton variability in San Francisco Bay, p. 325–350.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem. Pacific Division of the American Association for the Advancement of Science, San Francisco, California.

    Google Scholar 

  • Jassby, A. D. andT. M. Powell. 1990. Detecting changes in ecological time series.Ecology 71:2044–2052.

    Article  Google Scholar 

  • Kimmerer, W. J. 2002. Effects of freshwater flow on abundance of estuarine organisms: Physical effects or trophic linkage?Marine Ecology Progress Series 243:39–55.

    Article  Google Scholar 

  • Kimmerer, W. J. andJ. J. Orsi. 1996. Changes in the zooplankton of the San Francisco Bay estuary since the introduction of the clamPotamocorbula amurensis, p. 403–424.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem. Pacific Division of the American Association for the Advancement of Science. San Francisco, California.

    Google Scholar 

  • Lange, C. B., S. K. Burke, andW. H. Berger. 1990. Biological production off southern California is linked to climatic change.Climate Change 16:319–329.

    Article  Google Scholar 

  • Lehman, P. W. 1992. Environmental factors associated with longterm changes in chlorophyll concentration in the Sacramento-San Joaquin delta and Suisun Bay, California.Estuaries 15: 335–348.

    Article  CAS  Google Scholar 

  • Lehman, P. W. 1996a. Changes in chlorophylla concentration and phytoplankton community composition with water-year type in the upper San Francisco Bay estuary, p. 351–374.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem, Pacific Division of the American Association for the Advancement of Science. San Francisco, California.

    Google Scholar 

  • Lehman, P. W. 1996b. Water quality conditions in the Sacramento-San Joaquin Delta, 1970–1993. Department of Water Resources, Environmental Services Office. Sacramento, California

    Google Scholar 

  • Lehman, P. W. 2000. The influence of climate on phytoplankton community carbon in San Francisco Bay estuary.Limnology and Oceanography 45:580–590.

    CAS  Google Scholar 

  • Livingston, R. J., X. Niu, F. G. Lewis, III, andG. C. Woodsum. 1997. Freshwater input to a gult estuary: Long-term control of trophic organization.Ecological Applications 7:277–299.

    Article  Google Scholar 

  • Lucas, L. V., J. E. Cloern, J. K. Thompson, andN. E. Monsen. 2002. Functional variability of habitats within the Sacramento-San Joaquin Delta: Restoration implications.Ecological Applications 12:1528–1547.

    Google Scholar 

  • Malone, T., L. H. Crocker, S. E. Pike, andB. W. Wendler. 1988. Influences of river flow in the dynamics of phytoplankton production in a partially stratified estuary.Marine Ecology Progress Series 48:235–249.

    Article  Google Scholar 

  • McGowan, J. A., D. R. Cayan, andL. M. Dorman. 1998. Climateocean variability and ecosystem response in the Northeast Pacific.Science 281:210–217.

    Article  CAS  Google Scholar 

  • Mueller-Solger, A. B., A. D. Jassby, andD. C. Mueller-Navarra. 2002. Nutritional quality for zooplankton (Daphnia) in a tidal freshwater system (Sacramento-San Joaquin River Delta, USA).Limnology and Oceanography 47:1468–1476.

    Google Scholar 

  • Murrell, M. C. andJ. T. Hollibaugh. 1998. Microzooplankton grazing in northern San Francisco Bay measured by the dilution method.Aquatic Microbial Ecology 15:53–63.

    Article  Google Scholar 

  • Nichols, F. H. 1985. Increased benthic grazing: An alternative explanation for low phytoplankton carbon in northern San Francisco Bay during the 1976–1977 drought.Estuarine, coastal and Shelf Science 21:379–388.

    Article  Google Scholar 

  • Obrebski, S., J. J. Orsi, andW. J. Kimmerer. 1992. Long-term trends in zooplankton distribution and abundance in the Sacramento-San Joaquin estuary. Technical Report 32. Interagency Ecological Studies Program for the Sacramento-San Joaquin Estuary. Department of Water Resources, Sacramento, California.

    Google Scholar 

  • Orsi, J. J. 1995. Food habits of several abundant zooplankton species in the Sacramento-San Joaquin estuary. Technical Report 41. Interagency Ecological Program for the Sacramento-San Joaquin Estuary. Department of Water Resources, Sacramento, California.

    Google Scholar 

  • Orsi, J. J. andW. L. Mecum. 1986. Zooplankton distribution and abundance in the Sacramento-San Joaquin Delta in relation to certain environmental factors.Estuaries 9:326–339.

    Article  CAS  Google Scholar 

  • Orsi, J. J. andW. L. Mecum. 1996. Food limitation as the probable cause of a long-term decline in the abundance of Neomysismercedis the opossum shrimp in the Sacramento-San Joaquin estuary, p. 375–401.In J. T. Hollibaugh (ed.), San Francisco Bay: The Ecosystem. Pacific Division of the American Association for the Advancement of Science, San Francisco, California.

    Google Scholar 

  • Peterson, D. H., D. R. Cayan, J. F. Festa, F. H. Nichols, R. A. Walters, J. V. Slack, S. E. Hager, andL. E. Schemel. 1989. Climate variability in an estuary: Effects of riverflow on San Francisco Bay, p. 419–442.In D. H. Peterson (ed.), Aspects of Climate Variability in the Pacific and the Western Americas. American Geophysical Union, Washington, D.C.

    Google Scholar 

  • Powell, T., J. E. Cloern, andR. A. Walters. 1986. Phytoplankton spatial distribution in south San Francisco Bay: Mesoscale and small-scale variability, p. 369–383.In D. A. Wolfe (ed.), Estuarine Variability. Academic Press, Inc., Orlando, Florida.

    Google Scholar 

  • Quinn, W. H. andV. T. Neal. 1985. Long-term variations in southern oscillation, El Niño and Indonesian drought.Fisheries Bulletin 76:663–678.

    Google Scholar 

  • Reynolds, C. S. andJ. B. Reynolds. 1985. The atypical seasonality of phytoplankton in Crose Mere, 1972: An independent test of the hypothesis that variability in the physical environment regulates community dynamics and structure.British Phycological Journal 20:227–242.

    Article  Google Scholar 

  • Sherwood, C. R., D. A. Jay, R. B. Harvey, P. Hamilton, andC. A. Simenstad. 1990. Historical changes in the Columbia River estuary.Progress in Oceanography 25:299–352.

    Article  Google Scholar 

  • Siegfried, C. A. andM. E. Kopache. 1980. Feeding of Neomysismercedis (Holmes).Biological Bulletin 159:193–205.

    Article  Google Scholar 

  • Simenstad, C. A., L. F. Small, andC. D. McIntire. 1990. Consumption processes and food web structure in the Columbia River estuary.Progress in Oceanography 25:271–297.

    Article  Google Scholar 

  • Simmons, M. A. andA. W. Knight. 1975. Respiratory response of Neomysisintermedia (Crustacea: Mysidacea) to changes in salinity, temperature and season.Comparative Biochemistry and Physiology 50:181–193.

    Article  CAS  Google Scholar 

  • Straile, D. 2000. Meteorological forcing of plankton dynamics in a large and deep continental European lake.Oecologia 122: 44–50.

    Article  Google Scholar 

  • Strathmann, R. R. 1967. estimating the organic carbon content of phytoplankton from cell volume or plasma volume.Limnology and Oceanography 12:411–418.

    Article  CAS  Google Scholar 

  • Therriault, J.-C. andM. Levasseur. 1985. Control of phytoplankton production in the lower St. Lawrence estuary: Light and freshwater runoff.Review of Ecology and Systematics 112:77–96.

    Google Scholar 

  • Trenberth, K. E. andJ. W. Hurrell. 1994. Decadal atmosphere-ocean variations in the Pacific.Climate Dynamics 9:303–319.

    Article  Google Scholar 

  • U.S. Environmental Protection Agency (U.S. EPA). 1983. Methods for chemical analysis of water and wastes. Technical Report EPA-600/4-79-020. U.S. Environmental Protection Agency, Washington, D.C.

    Google Scholar 

  • Utermohl, H. 1958. Zur vervollkommung der quantitativen phytoplankton-methodik.Mitteilungen Internationale Verejunigung fur Theoretische und Angewandtel Limnologie 9:1–38.

    Google Scholar 

  • Weyhenmeyer, G. A., T. Blenckner, andK. Pettersson. 1999. Changes of the plankton spring outburst related to the North Atlantic Oscillation.Limnology and Oceanography 44:1788–1792.

    Article  Google Scholar 

Source of Unpublished Material

  • Orsi, J. J. Personal Communication. California Department of Fish and Game, 4001 N. Wilson Way, Stockton, California.

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Lehman, P.W. The influence of climate on mechanistic pathways that affect lower food web production in Northern San Francisco Bay estuary. Estuaries 27, 311–324 (2004). https://doi.org/10.1007/BF02803387

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