Skip to main content
Log in

Molecular basis for the genetic code

  • Published:
Journal of Molecular Evolution Aims and scope Submit manuscript

Summary

It was found by using the CPK molecular model that holes on the complexes of four nucleotides (C4N) on the tRNAs, namely complexes of the anticodon bases with the discriminator base at 4th position of 3′ end, had lock and key relations to the corresponding protein amino acids. Various general features of the universal and mitochondrial genetic codes were easily explained in terms of the C4N model. The recognition mechanism of the tRNA by the aminoacyl-tRNA-synthetase is closely correlated with the formation of the C4N on the Rossmann fold on the synthetase. The meaning of the hypermodification of the tRNA base next to the third anticodon base and other phenomena were also discussed.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Barell BG, Anderson S, Bankier AT, De Bruijn MHL, Chen E, Coulson AR, Drouin J, Eperon IC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young IG (1980) Different pattern of codon recognition by mammalian mitochondrial tRNAs. Proc Natl Acad Sci USA 77:3164–3166

    Google Scholar 

  • Bonitz SG, Berlani R, Coruzzi G, Li M, Macino G, Nobrega FG, Nobrega MP, Thalenfeld BE, Tsagoloff A (1980) Codon recognition rules in yeast mitochondria. ibid 77:3167–3170

    Google Scholar 

  • Crothers DM, Seno T, Soll DG (1972) Is There a Discriminator Site in Transfer RNA? Proc Natl Acad Sci USA 69:3063–3067

    Google Scholar 

  • Ebel JP, Giege R, Lorber B, Moras D, Thierry JG, Zaccai G (1981) A Report in the 7th International Biophysics Congress, Mexico City, August 26, p 177

  • Hayashi H, Miura K (1963) Inhibition of aminoacyl RNA synthetase by polynucleotides. J Mol Biol 10:345–348

    Google Scholar 

  • Hayashi H, Miura K (1966) Functional sites in transfer ribonucleic acid. Nature 209:376

    Google Scholar 

  • Hecht SM (1977) Participation of isomeric tRNA's in the partial reactions of protein biosyntesis. Tetrahedron 33:1671–1686

    Google Scholar 

  • Heckman JE, Sarnoff J, Alzner-De Weerd B, Yin S, RajBhandary UL (1980) Novel features in the genetic code and codon reading patterns in Neurospora crassa mitochondria based on sequences of six mitochondrial tRNAs. ibid 77:3159–3163

    Google Scholar 

  • Irwin MJ, Nyborg J, Reid BR, Blow DM (1976) The crystal structure of tyrosyl-transfer RNA synthetase at 2⋅7 Å resolution. J Mol Biol 105:577–586

    Google Scholar 

  • Janis J, Wodak S, Levitt M, Magiret B (1978) Conformation of amino acid side-chains in proteins. J Mol Biol 125:357–386

    Google Scholar 

  • Jungck JR (1978) The genetic code as a periodic table. J Mol Evol 11:211–224

    Google Scholar 

  • Kim SH (1978) Crystal structure of yeast tRNAPhe: To the solution structure and functional implications. In: Altman S (ed) Transfer RNA; MIT Press, p 248

  • Koike K (1980) (Private communication)

  • Lagerkvist U (1978) “Two out of three”: An alternative method for codon reading. Proc Natl Acad Sci USA 75:1759–1762

    Google Scholar 

  • Lancelot G, Hèléne C (1977) Selective recognition of nucleic acids by proteins: The specificity of guanine interaction with carboxylate ions. Proc Natl Acad Sci USA 74:4872–4875

    Google Scholar 

  • Ohtsuka E (1981) Abstract, 4th Ann. Meeting of Jap Mol Biol Soc, Nov. 24–27, Kanazawa, p 60

  • Olson T, Fournier MH, Langley KH, Ford NC (1976) Detection of a major conformational change in transfer ribonucleic acid by laser light scattering. J Mol Biol 102:193–203

    Google Scholar 

  • Reid BR (1977) Synthetase-tRNA recognition. In: Vogel HV (ed) Nucleic Acid-Protein Recognition, New York Academic Press: 375–390

  • Rich A, Schimmel PR (1977) Structural organization of complexes of transfer RNAs with aminoacyl transfer RNA synthetases. Nucl Acids Res 4:1649–1665

    Google Scholar 

  • Richmond MH (1962) The effect of amino acid analogues on growth and protein synthesis in microorganisms. Bacteriological Review, 26:398–420

    Google Scholar 

  • Risler JL, Zelwer C, Brunie S (1981) Methionyl-tRNA synthetase shows the nucleotide binding fold observed in dehydrogenases. Nature 292:384–386

    Google Scholar 

  • Rubin J, Blow DM (1981) Amino acid activation in crystalline tyrosyl-tRNA synthetase from Bacillus stearothermophilus. J Mol Biol 145:489–500

    Google Scholar 

  • Shimizu M (1979) Discrimination of amino acid by anticodon and discriminator bases. Proc Jpn Acad B55:387–392

    Google Scholar 

  • Shimizu M (1981) Origin and evolution of the genetic code. In: Wolman Y (eds) Origin of Life, D. Reidel Publ. Comp: pp 423–430

  • Tsagoloff A (1981) (private communication)

  • Weber AL, Lacey Jr JC (1978) Genetic code correlations: Amino acids and their anticodon nucleotides. J Mol Evol 11:199–210

    Google Scholar 

  • Weissenbach J, Grosjean H (1981) Effect of t6 A in yeast tRNA ArgIII on codon-anticodon and anticodon-anticodon interaction: A thermodynamic and kinetic Evaluation. Eur J Biochem 116:207–210

    Google Scholar 

  • Wetzel R (1978) Aminoacyl-tRNA synthetase families and their significance to the origin of the genetic code. Origin of Life 9:39–50

    Google Scholar 

  • Wilson MJ, Hatfield DL, Poirier LA (1981) Aminoacylation of ethionine to rat liver tRNAMet and its incorporation into protein. FEBS Letter 128:157–160

    Google Scholar 

  • Zelwer C, Risler J, Monteilhet C (1976) A Low resolution model of crystalline methionyl-transfer RNA synthetase from Escherichia coli. J Mol Biol 102:93–106

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Shimizu, M. Molecular basis for the genetic code. J Mol Evol 18, 297–303 (1982). https://doi.org/10.1007/BF01733895

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01733895

Key words

Navigation