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Complete sequence of the RNA genome of human rhinovirus 16, a clinically useful common cold virus belonging to the ICAM-1 receptor group

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Abstract

We report here the complete nucleotide sequence and predicted polyprotein sequence of HeLa cell-adapted human rhinovirus 16 (HRV16). This virus is more suitable than human rhinovirus 14 (HRV14) for clinical studies, and its growth and physical properties are favorable for biochemical and crystallographic analysis. The complete message-sense RNA genome of HRV16 is composed of 7124 bases, not including the poly(A) tail. An open reading frame, extending from base 626 to 7084 predicts a polyprotein containing 2152 amino acid residues. Comparison with other rhinovirus sequences shows HRV16 is much more representative of human rhinoviruses than HRV14. No apparent relationship was found between receptor group and amino acid sequence in VP1, the capsid protein bearing the binding site for the intercullular adhesion molecule-1 (ICAM-1) in both HRV14 and HRV16.

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References

  1. Couch R.B. in Fields B.N., Knipe D.M., Chanock R.M., Hirsch M.S., Melnick J.L., Monath T.P., and Roizman B. (eds).Virology 2nd ed. Raven Press, New York, 1990, pp. 607–629.

    Google Scholar 

  2. Rueckert R.R. in Fields B.N., Knipe D.M., Chanock R.M., Hirsch M.S., Melnick J.L., Monath T.P., and Roizman B. (eds).Virology 2nd ed. Raven Press, New York, 1990, pp. 507–548.

    Google Scholar 

  3. Colonno R.J., Callahan P.L., and Long W.J., J Virol57 7–12, 1986.

    Google Scholar 

  4. Greve J.M., Davis G., Meyer A.M., Forte C.P., Yost S.C., Malor C.W., Kamarck M.E., and McClelland A., Cell56 839–847, 1989.

    Google Scholar 

  5. Staunton D.E., Merluzzi V.J., Rothlein R., Barton R., Marlin S.D., and Springer T.A., Cell56 849–853, 1989.

    Google Scholar 

  6. Callahan P.L., Mizutani S., and Colonno R.J., Proc Natl Acad Sci USA82 732–736, 1985.

    Google Scholar 

  7. Stanway G., Hughes P., Mountford R., Minor P., and Almond J., Nucleic Acids Res12 7859–7875, 1984.

    Google Scholar 

  8. Skern T., Sommergruber W., Blaas D., Gruendler P., Fraundorfer F., Pieler C., Fogy I., and Kuechler E., Nucleic Acids Res13 2111–2126, 1985.

    Google Scholar 

  9. Lee W.-M., Monroe S.S., and Rueckert R.R., J Virol67 2110–2122, 1993.

    Google Scholar 

  10. Duechler M., Skern T., Sommergruber W., Neubauer C., Gruendler P., Fogy I., Blaas D., and Kuechler E., Proc Natl Acad Sci USA84 2605–2609, 1987.

    Google Scholar 

  11. Hughes P.J., North C., Jellis C.H., Minor P.D., and Stanway G., J Gen Virol69 49–59, 1988.

    Google Scholar 

  12. Colonno R.J., Condra J.H., Mizutani S., Callahan P.L., Davies M-E., and Murcko M.A., Proc Natl Acad Sci USA85 5449–5453, 1988.

    Google Scholar 

  13. Sherry B., Mosser A.G., Colonno R.J., and Rueckert R.R., J Virol57 246–257, 1986.

    Google Scholar 

  14. Pevear D.C., Fancher M.J., Felock P.J., Rossman M.G., Miller M.S., Diana G., Treasurywala A.M., McKinlay M.A., and Dutko F.J., J Virol63 2002–2007, 1989.

    Google Scholar 

  15. Smith T.J., Kremer M.J., Luo M., Vriend G., Arnold E., Kamer G., Rossmann M.G., McKinlay G.D., Diana G.D., and Otto M.J., Science233 1286–1293, 1986.

    Google Scholar 

  16. Heinz B.A., Rueckert R.R., Shepard D.A., Dutko F.J., McKinlay M.A., Fancher M., Rossman M.G., Badger J., and Smith T.J., J Virol63 2476–2485, 1989.

    Google Scholar 

  17. Giranda V.L., Heinz B.A., Oliveira M.A., Minor I., Kim K.H., Kolatkar P.R., Rossmann M.G., and Rueckert R.R., Proc Natl Acad Sci USA89 10213–10217, 1992.

    Google Scholar 

  18. Olson N.H., Kolatkar P.R., Oliveira M.A., Cheng R.H., Greve J.M., McClelland A., Baker T.S., and Rossmann M.G., Proc Natl Acad Sci USA90 507–511, 1993.

    Google Scholar 

  19. Shepard D.A., Heinz B.A., and Rueckert R.R., J Virol67 2245–2254, 1993.

    Google Scholar 

  20. Smith T.J., Olson N.H., Cheng R.H., Liu H., Chase E.S., Lee W.-M., Leippe D.M., Mosser A.G., Rueckert R.R., and Baker T.S., J Virol67 1148–1158, 1993.

    Google Scholar 

  21. Rossmann M.G., Arnold E., Erickson J.W., Frankenberger E.A., Griffith J.P., Hecht H-J., Johnson J.E., Kramer G., Luo M., Mosser A.G., Rueckert R.R., Sherry B., and Vriend G., Nature317 145–153, 1985.

    Google Scholar 

  22. Barclay W.S., Al-Nakib W., Higgins P.G., and Tyrrell D.A.J., Epidemiol Infect103 659–669, 1989.

    Google Scholar 

  23. Calhoun W.J., Swenson C.A., Dick E.C., Schwartz L.B., Lemanske R.F., Jr., and Busse W.W., Am Rev Respir Dis144 1267–1273, 1991.

    Google Scholar 

  24. Doyle W.J., Skoner D.P., Fireman P., Seroky J.T., Green I., Ruben F., Kerdatzke D.R., and Gwaltney J.M., J Allergy Clin Immunol89 968–978, 1992.

    Google Scholar 

  25. Oliveira M.A., Zhao R., Lee W.-M., Kremer M.J., Minor I., Rueckert R., Diana G.D., Pevear D.C., Dutko F.J., McKinlay M.A., and Rossmann M.G., Structure1 51–68, 1993.

    Google Scholar 

  26. Lemanske R.F. Jr., Dick E.C., Swenson C.A., Vrtis R.F., and Busse W.W., J Clin Invest83 1–10, 1989.

    Google Scholar 

  27. Bush R.K., Busse W., Flaherty D., Warshauer D., Dick E.C., and Reed C.E., J Allergy Clin Immunol61 80–87, 1978.

    Google Scholar 

  28. D'Alessio D.J., Peterson J.A., Dick C.R., and Dick E.C., J Infect Dis133 28–36, 1976.

    Google Scholar 

  29. Meschievitz C.K., Schultz S.B., and Dick E.C., J Infect Dis150 195–201, 1984.

    Google Scholar 

  30. Busse W.W., Anderson C.L., Dick E.C., and Warshauer D., Am Rev Respir Dis122 641–646, 1980.

    Google Scholar 

  31. Sherry B. and Rueckert R., J Virol53 137–143, 1985.

    Google Scholar 

  32. Gubler U. and Hoffman B.J., Gene25 263–269, 1983.

    Google Scholar 

  33. Devereaux J., Haeberli P., and Smithies O., Nucleic Acids Res12 378–395, 1984.

    Google Scholar 

  34. Palmenberg A.C. in Semler B. and Ehrenfeld E. (eds).Molecular Aspects of Picornavirus Infection and Detection. ASM Publications, Washington DC, 1988, pp. 211–241.

    Google Scholar 

  35. Kim S., Smith T.J., Chapman M.S., Rossmann M.G., Pevear D.C., Dutko F.J., Felock P.J., Diana G.D., and McKinlay M.A., J Mol Biol210 91–111, 1989.

    Google Scholar 

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Genbank accession number: L24917.

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Lee, WM., Wang, W. & Rueckert, R.R. Complete sequence of the RNA genome of human rhinovirus 16, a clinically useful common cold virus belonging to the ICAM-1 receptor group. Virus Genes 9, 177–181 (1995). https://doi.org/10.1007/BF01702661

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  • DOI: https://doi.org/10.1007/BF01702661

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