Summary
Investigation of the organization of the tandemly repeated 5S and 18–25S ribosomal RNA (rRNA) genes was carried out on members of the generaLens andCicer using restriction endonuclease digestion and Southern hybridization. The 5S rRNA unit (gene+spacer) inLens (0.38 to 0.50 kb) andCicer 0.50 to 0.44 kb) is the largest among the legumes. InL. nigricans andL. culinaris ssp.odemensis a second repeat size was detected. Restriction maps for the 18–25S units ofLens andCicer species were developed. The 18–25S rRNA unit varied from 8.3 to 9.8 kb inLens and 10.5 to 11.4 kb inCicer. The only detectable variability in theLens andCicer 18–25S rRNA unit was in the length of the intergenic spacer (IGS) region, except for a HindIII site in the IGS region ofL. nigricans ssp.nigricans and in allCicer species.
Similarities in the size of both 5S and 18–25S rRNA units were noted betweenL. culinaris ssp.culinaris andL. culinaris ssp.orientalis, which supports previous evidence thatL. culinaris ssp.orientalis is the progenitor of the cultivated lentil. Differences in the arrangement of both 5S and 18–25S rRNA units were noted betweenL. nigricans ssp.nigricans andL. nigricans ssp.ervoides, indicating either divergent evolution of these subspecies or alternatively incorrect taxonomy.
On the basis of the size of the 5S rRNA unit,C. bijugum, C. chorassanicum andC. echinospermum formed a group with a slightly smaller unit than the otherCicer species. Similarities in the length of both 5S and 18–25S rRNA units ofC. arietinum andC. reticulatum possibly confirmC. reticulatum as the progenitor ofC. arietinum. Cicer cuneatum has a smaller 18–25S rRNA unit than the otherCicer species as a result of a smaller intergenic spacer.
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References
Ahmad, F., 1988. Interspecific hybridization and genetic relationships among annualCicer L. species. Ph.D. Thesis, University of Saskatchewan. Saskatoon, Canada.
Ahmad, F., P.M. Gaur & A.E. Slinkard, 1992. Isozyme polymorphism and phylogenetic interpretations in the genusCicer L. Theor. Appl. Genet. 83: 620–627.
Ahmad, F. & A.E. Slinkard, 1992. Genetic relationships in the genusCicer L. as revealed by polyacrylamide gel electrophoresis of seed storage-proteins. Theor. Appl. Genet. 84: 688–692.
Ahmad, F., A.E. Slinkard & G.J. Scoles, 1987. The cytogenetic relationship betweenCicer judaicum Boiss andCicer chorassanicum (Bge.) M. Pop. Genome 29: 883–886.
Ausubel, S.M., R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith & K. Struhl (Eds), 1989. Analysis of DNA sequence by blotting and hybridization: Southern blotting and hybridization. In. Current protocols. Vol. 1. Green Publishing Associates and Wiley Interscience. Toronto, Ont. pp. 2.9.1–2.9.7.
Birnboim, H.C. & J. Doly, 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acid. Res. 7: 1513.
Dellaporta, S.L., J. Wood & B. Hicks. 1983. A plant DNA mini preparation: Version II. Plant Mol. Biol. Rep. 1: 19–21.
Doyle, J.J., 1988. 5s ribosomal gene variation in the soybean and its progenitor. Theor. Appl. Genet. 75: 621–624.
Doyle, J.J. & R.N. Beachy, 1985. Ribosomal gene variation in the soybean (Glycine) and its relatives. Theor. Appl. Genet. 70: 369–376.
Dvorák, J. & R. Appels. 1982. Chromosome and nucleotide sequence differentiation in genomes of polyploidTriticum species. Theor. Appl. Genet. 63: 349–360.
Ellis, T.H.N., D. Lee, C.M. Thomas, P.R. Simpson, W.G. Cleary, M.A. Newman & K.W.G. Burcham, 1988. 5s rRNA genes inPisum: sequence, long range and chromosomal organization. Mol. Gen. Genet. 214:333–342.
Gerlach, W.L. & J.R. Bedbrook, 1979. Cloning and characterization of ribosomal RNA genes from wheat and barley. Nucleic Acids Res. 7: 1869–1885.
Gottlob-McHugh, S.G., M. Levesque, K. MacKenzie, M. Olson, O. Yarosh & D.A. Johnson, 1990. Organization of the 5s rRNA genes in the soybeanGlycine max (L.) Merrill and conservation of the rDNA repeat structure in higher plants. Genome 33: 486–494.
Havey, M.J. & F.J. Muchlbauer, 1989. Variability for restriction fragment length and phylogenies in lentil. Theor. Appl. Genet. 77: 839–843.
Hoffman, D.L., D.E. Soltis, F.J. Muehlbauer & G. Ladizinsky, 1986. Isozyme polymorphism inLens. Syst. Bot. 11: 392–402.
Hoffman, D.L., D.E. Soltis, F.J. Muehlbauer & G. Ladizinsky, 1988. Morphological variation inLens (Leguminosae)). Syst. Bol. 13: 87–96.
Jorgensen, R.A., R.E. Cuellar, W.F. Thomson & T.A. Kavanagh, 1987. Structure and variation in ribosomal RNA genes of pea. Plant Mol. Biol. 8: 3–12.
Ladizinsky, G., 1979. Species relationships in the genusLens as indicated by seed protein electrophoresis. Bot. Gaz. 140: 449–451.
Ladizinsky, G. & A. Adler, 1975. The origin of chickpea as indicated by seed protein electrophoresis. Isr. J. Bot. 24: 183–189.
Ladizinsky, G. & A. Adler, 1976a. Genetic relationships among the annual species ofCicer L. Theor. Appl. Genet. 48: 197–203.
Ladizinsky, G. & A. Adler, 1976b. The origin of chickpea,Cicer arietinum L. Euphytica 25: 211–217.
Ladizinsky, G., D. Braun, D. Goshen & F.J. Muehlbauer, 1994. The biological species of the genusLens L. Bot. Gaz. 145: 253–261.
Lawrence, G.J. & R. Appels, 1986. Mapping the nucleolus organizing region, seed protein loci, and isozyme loci on chromosome IR in rye. Theor. Appl. Genet. 71: 742–749.
Long, E.O. & I.B. Dawid, 1980. Repeated genes in eukaryotes. Ann. Rev. Biochem. 49: 727–764.
Mascia, P.N., I. Rubenstein, R.L. Philips, A.S. Wang & L.Z. Xiang, 1981. Localization of the 5S rRNA genes and evidence for diversity in the 5s rDNA region of maize. Gene 15: 7–20.
Molnar, S.J., P.K. Gupta, G. Fedak & R. Wheatcroft, 1991. Ribosomal DNA repeat unit polymorphism 25Hordeum species. Theor. Appl. Genet. 78: 387–392.
Muench, D.G., 1989. Crossability, cytology and chloroplast DNA variation inLens Miller. M.Sc. Thesis, University of Saskatchwan. Saskatoon, SK.
Muench, D.G., A.E. Slinkard & G.J. Scoles, 1991. Determination of genetic variation and taxonomy in lentil (Lens Miller) species by chloroplast DNA polymorphism. Euphytica 56: 213–218.
Rafalski, J.A., M. Wiewiorowski & D. Scoll, 1982. Organization and nucleotide sequence of nuclear rRNA genes in yellow lupine (Lupinus luteus). Nucleic Acids Res. 10: 7635–7642.
Rafalski, J.A., M. Wiewiorowski & D. Scoll, 1983. Organization of ribosomal DNA in yellow lupine (Lupinus luteus) and sequence of the 5S RNA gene. FEBS Lett. 152: 241–246.
Reddy, P. & R. Appels, 1989. A second locus for the 5S multigene family inSecale L.: sequence divergence in two lineages of the family. Genome 32: 456–467.
Sambrook, J., E.F. Fritsch & R. Wheatcroft. 1990. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, NY.
Scoles, G.J., B.S. Gill, Z.Y. Xin, B.C. Clarke, C.L. McIntyre, C. Chapman & R. Appels, 1988. Frequent duplication and deletion events in the 5S RNA genes and the associated spacer region of Triticeae. Pl. Syst. Evol. 160: 105–122.
van der Maesen, L.J.G., 1972. Cicer L: a monograph of the genus, with special reference to the chickpea (Cicer arietinum L.). its ecology and cultivation. Ph.D. Thesis. Agricultural University of Wageningen, Agricultural College Information Bulletin. Wageningen 72–10.
van der Maesen, L.J.G., 1987. Origin, history and taxonomy of chickpea. In: M.C. Saxena & K.B. Singh (Eds) The chickpea. CAB Int. Publ. UK. pp. 11–34.
Yakura, K., A. Kato & S. Tanmifuji, 1984. Length heterogeneity of the larger spacer ofVicia faba rDNA is due to the differing number of a 325 bp repetitive sequence elements. Mol. Gen. Genet. 193: 400–405.
Zimmer, E.A., E.R. Jupe & V. Walbot, 1988. Ribosomal gene structure, variation and inheritance in maize and its ancestors. Genetics 120: 1125–1136.
Zohary, D. & M. Hopf, 1988. Pulses. In: Domestication of plants in the Old World. Oxford Univ. Press, Oxford, UK. pp. 83–112.
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Patil, P.B., Vrinten, P.L., Scoles, G.J. et al. Variation in the ribosomal RNA units of the generaLens andCicer . Euphytica 83, 33–42 (1995). https://doi.org/10.1007/BF01677858
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DOI: https://doi.org/10.1007/BF01677858