Skip to main content
Log in

Evolution and recombination of bovine DNA repeats

  • Articles
  • Published:
Journal of Molecular Evolution Aims and scope Submit manuscript

Abstract

The history of the abundant repeat elements in the bovine genome has been studied by comparative hybridization and PCR. The Bov-A and Bov-B SINE elements both emerged just after the divergence of the Camelidae and the true ruminants. A 31-bp subrepeat motif in satellites of the Bovidae species cattle, sheep, and goat is also present in Cervidae (deer) and apparently predates the Bovidae. However, the other components of the bovine satellites were amplified after the divergence of the cattle and the Caprinae (sheep and goat). A 23-bp motif, which as subrepeat of two major satellites occupies 5% of the cattle genome, emerged only after the split of the water buffalo and other cattle species. During the evolution of the Bovidae the satellite repeat units were shaped by recombination events involving subrepeats, other satellite components, and SINE elements. Differences in restriction sites of homologous satellites indicate a continuing rapid horizontal spread of new sequence variants.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Allard MW, Miyamoto MM, Jarecki L, Kraus F, Tennant, MR (1992) DNA systematics and evolution of the artiodactyl family Bovidae. Proc Natl Acad Sci USA 89:3972–3976

    Google Scholar 

  • Amano T, Miyakoshi Y, Takada T, Kikkawa Y, Suzuki H (1994) Genetic variants of ribosomal DNA and mitochondrial DNA between swamp and river buffaloes. Animal Genet 25:29–36

    Google Scholar 

  • Batzer MA, Deininger PL (1991) A human-specific subfamily of Alu sequences. Genomics 8:481–487

    Google Scholar 

  • Bogenberger JM, Neumaier PS, Fittler F (1987a) The Muntjak satellite component common to all Cervidae: its organization and chromosomal distribution during evolution. Chromosoma 95:154–161

    Google Scholar 

  • Bogenberger JM, Neumaier PS, Fittler F (1987b) The muntjak satellite IA is composed of 31-bp internal repeats that are highly homologous to the 31-bp subrepeats of the bovine satellite 1.715. Eur J Biochem 148:55–59

    Google Scholar 

  • Buckland RA (1983) Comparative structure and evolution of goat and sheep satellite I DNAs. Nucleic Acids Res 11:1349–1360

    Google Scholar 

  • Buckland RA (1985) Sequence and evolution of related bovine and caprine satellite DNAs. Identification of a short DNA sequence potentially involved in satellite DNA amplification. J Mol Biol 186:25–30

    Google Scholar 

  • Charlesworth B, Sniegowski P, Stephan W (1994) The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215–220

    Google Scholar 

  • Ciulla TA, Sklar RM, Hauser SL (1988) A simple method for DNA purification from peripheral blood. Anal Biochem 174:485–488

    Google Scholar 

  • Coltman DW, Wright JM (1994) Can SINEs: a family of tRNA-derived retroposons specific for the superfamily Canoidae. Nucleic Acids Res 22:2726–2730

    Google Scholar 

  • Denome RM, O'Callaghan B, Luitjens C, Harper E, Bianco R (1994) Characterization of a satellite DNA from Antilocapra americana. Gene 145:257–259

    Google Scholar 

  • Elder JF Jr, Turner BJ (1994) Concerted evolution at the population level: pupfishHindIII satellite DNA sequences. Proc Natl Acad Sci USA 91:994–998

    Google Scholar 

  • Frengen E, Thomsen P, Kristensen T, Kran S, Miller R, Davies W (1991) Porcine SINEs: characterization and use in species-specific amplification. Genomics 10:949–956

    Google Scholar 

  • Gaillard C, Doly J, Cortadas J, Bemardi G (1981) The primary structure of bovine satellite 1.715. Nucleic Acids Res 9:6069–6082

    Google Scholar 

  • Gatesy J, Yelon D, DeSalle R, Vrba ES (1992) Phylogeny of the Bovidae (artiodactyla, Mammalia) based on mitochondrial ribosomal DNA sequences. Mol Biol Evol 9:433–446

    Google Scholar 

  • Leeflang EP, Liu W-M, Chesnokov IN, Schmid CW (1993) Phylogenetic isolation of a human founder gene: drift to new subfamily identity. J Mol Evol 37:559–565

    Google Scholar 

  • Lenstra JA, Van Boxtel JAF, Zwaagstra KA, Schwerin M (1993) Short interspersed nuclear elements from the Bovidae. Animal Genet 24:33–39

    Google Scholar 

  • Marçais B, Laurent A-M, Charlieu J-P, Roizès G (1993) Organization of the variant domains of oc satellite DNA in human chromosome 21. J Mol Evol 37:171–178

    Google Scholar 

  • Miklos GLG (1985) Localized highly repetitive DNA sequences in vertebrate and invertebrate genomes. In: MacIntyre RJ (ed) Molecular evolutionary genetics. Plenum, New York, p 241

    Google Scholar 

  • Modi WS, Gallagher DS, Womack JE (1994) Molecular organization and chromosomal localization of six highly repeated DNA families in the bovine genome. Animal Biotechnol 4:143–161

    Google Scholar 

  • Novak U (1984) Structure and properties of a highly repetitive DNA sequence in sheep. Nucleic Acids Res 12:2343–2350

    Google Scholar 

  • O'Brien SJ, Seudnez HN, Womack JE (1988) Mammalian genome organization: an evolutionary view. Annu Rev Genet 22:323–351

    Google Scholar 

  • O'Brien SJ, Womack JE, Lyons LA, Moore KJ, Jenkin NA, Copeland NG (1993) Anchored reference loci for comparative genome mapping in mammals. Nature Genet 3:103–112

    Google Scholar 

  • Okada N, Ohshima K (1993) A model for the mechanism of initial generation of short interspersed elements (SINEs) J Mol Evol 37:167–170

    Google Scholar 

  • Pech M, Streeck RE, Zachau HG (1979) Patchwork structure of a bovine satellite DNA. Cell 18:883–893

    Google Scholar 

  • Plucienniczak A, Skowronski J, Jaworski J (1982) Nucleotide sequence of bovine 1.715 satellite DNA and its relation to other bovine satellite sequences. J Mol Biol 158:293–304

    Google Scholar 

  • Quentin Y (1988) The Alu family developed through successive waves of fixation closely connected with primate lineage history. J Mol Evol 27:194–202

    Google Scholar 

  • Quentin Y (1989) Successive waves of fixation of B 1 variants in rodent lineage history. J Mol Evol 28:299–305

    Google Scholar 

  • Quentin Y (1994) Emergence of master sequences in families of retroposons derived from 7s1 RNA. Genetica 93:203–215

    Google Scholar 

  • Reisner AH, Bucholtz CA (1983) Apparent relatedness of the main component of ovine 1.714 satellite DNA to bovine 1.715 satellite DNA. EMBO J 2:1145–1149

    Google Scholar 

  • Sakagami M, Okshima K, Mukoyama H, Yasue H, Okada N (1994) A novel tRNA species as an origin of short repetitive elements (SINEs). Equine SINEs may have originated from tRNAsSer. J Mol Biol 239:731–735

    Google Scholar 

  • Sakamoto K, Okada N (1985) Rodent type 2 Alu family, rat identifier sequence, rabbit C family, and bovine or goat 73-bp repeat may have evolved from tRNA genes. J Mol Evol 22:134–140

    Google Scholar 

  • Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY

    Google Scholar 

  • Singer M, Berg P (1991) Genes and genomms. A changing perspective. Blackwell, Oxford

    Google Scholar 

  • Singer DS, Parent LJ, Ehrlich R (1987) Identification and DNA sequence of an interspersed repetitive DNA element in the genome of the miniature swine. Nucleic Acids Res 15:2780

    Google Scholar 

  • Skowronski J, Plucienniczak A, Bednarek A, Jaworski J (1984) Bovine 1.709 satellite: recombination hotspots and dispersed repeated sequences. J Mol Biol 177:399–416

    Google Scholar 

  • Streeck RE (1981) Inserted sequences in bovine satellite DNA's. Science 213:443–445

    Google Scholar 

  • Streeck RE (1982) A multicopy insertion element on the bovine genome with structural homology to the long terminal repeats of retroviruses. Nature 298:767–769

    Google Scholar 

  • Taparowsky EJ, Gerbi SA (1982) Sequence analysis of bovine satellite I DNA (1.715 gm/cm3). Nucleic Acids Res 10:1271–1281

    Google Scholar 

  • Yu LC, Lowensteiner D, Wong EF-K, Sawada I, Mazrimas J, Schmid C (1986) Localization and characterization of recombinant DNA clones derived from the highly repetitive DNA sequences in the Indian muntjac cells: their presence in the Chinese muntjac. Chromosoma 93:521–528

    Google Scholar 

  • Van der Vlugt HHJ, Lenstra JA (1995) SINE elements of carnivores. Mammal. Genome 6:49–51

    Google Scholar 

  • Weiner AM, Deininger PL, Efstratiadis A (1986) Nonviral retroposons: genes, pseudogenes, and transposable elements generated by reverse flow of genetic information. Annu Rev Biochem 55:631–661

    Google Scholar 

  • Willard HF (1990) Centromeres of mammalian chromosomes. Trends Genet 6:410–416

    Google Scholar 

  • Wijers EJ, Zijlstra C, Lenstra JA (1993) Rapid evolution of horse satellite DNA. Genornics 18:113–117

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Correspondence to: J.A. Lenstra

Rights and permissions

Reprints and permissions

About this article

Cite this article

Jobse, C., Buntjer, J.B., Haagsma, N. et al. Evolution and recombination of bovine DNA repeats. J Mol Evol 41, 277–283 (1995). https://doi.org/10.1007/BF01215174

Download citation

  • Received:

  • Accepted:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF01215174

Key words

Navigation