Abstract
The DNA sequence properties of 5S DNA (5S RNA gene plus spacer) from a wide range of families of plants is reviewed with particular reference to the possibility of using the information for phylogenetic inference. Although the data-base is extremely limited, the available evidence suggests that within a subclass or tribe phylogenetic inference can be made, provided that a knowledge about the number of chromosomal locations of the gene loci (5S Dna loci) is available. The evidence suggests little, if any, exchange occurs between the 5S DNA units at different chromosomal loci and the available data favour a mechanism involving amplification/deletion processes for creating structural changes at the5S Dna loci. Sequences originating from species in the familiesRosaceae, Poaceae, andBrassicaceae tended to group together in cladistic analyses but with low confidence limits. Surprisingly little of the spacer region showed conservation of sequence that may relate to a function in the control of transcription by RNA polymerase III.
Similar content being viewed by others
References
Appels, R., Baum, B., 1992: Evolution of the Nor and5S Dna loci in theTriticeae. — InSoltis, P. S., Soltis, D. E., Doyle, J. J., (Eds): Molecular systematics of plants, pp. 92–116. — New York, London: Chapman & Hall.
, 1992: The 5S DNA units of bread wheat (Triticum aestivum). — Pl. Syst. Evol.183: 183–194.
, 1980: Molecular and chromosomal organization of DNA sequences coding for the ribosomal RNA's in cereal. — Chromosoma78: 293–311.
Baum, B. R., Appels, R., 1992: Evolutionary change at the5S Dna loci of species in theTriticeae. — Pl. Syst. Evol.183: 195–208.
Capesius, I., 1991: Sequence of the 5S ribosomal RNA gene fromSinapis alba. — Pl. Molec. Biol.17: 169–170.
Cox, A. V., Bennett, M. D., Dyer, T. A., 1992: Use of the polymerase chain reaction to detect spacer size heterogeneity in plant5S-rRNA gene clusters and to locate such clusters in wheat (Triticum aestivum L.). — Theor. Appl. Genet.83: 684–690.
Cullis, C. A., Creisen, G. P., Gorman, S. W., Teasdale, R. D., 1988: The 25S, 18S, and 5S ribosomal RNA genes fromPinus radiata D. Don. — InCheliak, W. M., Yapa, A. C., (Eds): Molecular genetics of forest trees, pp. 24–40. — Chalk River, Ontario, Canada: Petawawa Natl. For. Inst. Rep. PI-X-80.
Dvořák, J., Zhang, H.-B., Kota, R. S., Lassner, M., 1989: Organization and evolution of the 5S ribosomal RNA gene family in wheat and related species. — Genome32: 1003–1016
Ellis, T. H. N., Lee, D., Thomas, C. M., Simpson, P. R., Cleary, W. G., Newman, M. A., Burdam, K. W. G., 1988: 5S rRNA genes inPisum: sequence, long range and chromosomal organization. — Mol. Gen. Genet.214: 333–342.
Erdmann, V. A., Wolters, J., 1986: Collection of published 5S, 5.8S, and 4.5S ribosomal RNA sequences. — Nucl. Acids Res.14: r 1-r 59.
Efstradiatis, A., Posakony, J. W., Maniatis, T., Lawn, R. M., O'Connell, C. O., Spritz, R. A., De Riel, J. K., Forget, B. G., Weissmann, S. M., Slightom, J. L., Blechl, A. E., Smithies, O., Baralle, F. E., Shoulders, C. C., Proudfoot, N. J., 1980: The structure and evolution of the human β-globin gene family. — Cell21: 653–668.
Fedoroff, N. V., 1979: On spacers. — Cell16: 697–710.
Frasch, M., Wenzel, W., Hess, D., 1989: The nucleotide sequences of nuclear 5S rRNA genes and spacer regions ofPetunia hybrida. — Nucl. Acids. Res.17: 2857.
Gerlach, W. L., Dyer, T. A., 1980: Sequence organization of the repeating units in the nucleus of wheat which containg r5S RNA genes. — Nucl. Acids Res.8: 4851–4865.
Gill, B. S., Morris, K. L. D., Appels, R., 1988: Assignment of the genomic affinities of chromosomes from polyploidElymus species added to wheat. — Genome30: 70–82.
Goldsborough, R. B., Ellis, T. H. N., Lomonossoff, G. D., 1982: Sequence variation and methylation of the flax 5S RNA genes. — Nucl. Acids Res.10: 4501–4514.
Gorman, S. W., Teasdale, R. D., Cullis, C. A., 1992: Structure and organization of the 5S rRNA genes (5S DNA) inPinus radiata (Pinaceae). Pl. Syst. Evol.183: 223–234.
Gottlob-McHugh, S. G., Leveresque, M., MacKenzie, K., Olson, M., Yarosh, O., Johnson, D. A., 1990: Organization of the 5S rRNA genes in the soybeanGlycine max (L.)Merrill and conservation of the 5S rDNA repeat structure in higher plants. — Genome33: 486–496.
Halanych, K. M., 1991: 5S ribosomal RNA sequences inappropriate for phylogenetic reconstruction. — Mol. Biol. Evol.8: 249–253.
Hemleben, V., Werts, D., 1988: Sequence organization and putative regulatory elements in the 5S rRNA genes of two higher plants (Vigna radiata andMatthiola incana). — Gene62: 165–169.
Islam, A. K. M. R., Shepherd, K. W., 1990: Incorporation of barley chromosomes into wheat. — InBajaj, Y. P. S., (Ed.): Biotechnology in Agriculture and Forestry 13: Wheat, pp. 121–151. — Berlin: Springer.
Kassavetis, G. S., Baum, B. R., Nguyen, L. A., Geiduschek, P., 1990:S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. — Cell60: 235–245.
Koebner, R. M. D., Appels, R., Shepherd, K. W., 1986: Rye heterochromatin II. Characterization of a derivative from chromosome 1DS. 1RL with a reduced amount of the major repeating sequence. — Canad. J. Genet. Cytol.28: 658–664.
Kolchinsky, A., Kanazin, V., Yakovleva, E., Gazumyan, A., Kole, C., Ananiev, E., 1990: 5S-RNA genes of barley are located on the second chromosome. — Theor. Appl. Genet.80: 333–336.
Lagudah, E. S., Clarke, B. C., Appels, R., 1989: Phylogenetic relationships ofTriticum tauschii, the D genome donor to hexaploid wheat. 4. Variation and chromosomal location of 5S DNA. — Genome32: 1017–1025.
Lassar, A. B., Martin, P. L., Roeder, R. G., 1983: Transcription of class II genes: formation of preinitiation complexes. — Science222: 740–748.
Lawrence, G. T., Appels, R., 1986: Mapping the nucleolus organizer region, seed protein loci and isozyme loci on chromosome IR in rye. — Theor. Appl. Genet.71: 742–749.
McIntyre, C. L., Winberg, B., Houchins, K., Appels, R., Baum, B., 1992: Relationships betweenOryza (Poaceae) species based on 5S DNA sequences. — Pl. Syst. Evol.183: 249–264.
Moran, G. F., Smith, D., Bell, J. C., Appels, R., 1992: The 5S RNA genes inPinus radiata and the spacer region as a probe for relationships betweenPinus species. — Pl. Syst. Evol.183: 209–221.
Mukai, Y., Endo, T. R., Gill, B. S., 1990: Physical mapping of the 5S rRNA multigene family in common wheat. — J. Heredity81: 290–295.
Pardue, M. L., Brown, D. D., Birnstiel, M. L., 1973: Location of the genes for 5S ribosomal RNA inXenopus laevis. — Chromosoma42: 191–203.
Playford, J., Appels, R., Baum, B. R., 1992: The 5S DNA units ofAcacia species (Fabaceae). — Pl. Syst. Evol.183: 235–247.
Rafalski, A., Wiewiorowski, M., Söll, D., 1982: Organization and nucleotide sequence of nuclear 5S rRNA genes in yellow lupin (Lupinus luteus). — Nucl. Acids. Res.10: 7635–7642.
Reddy, P., Appels, R., 1989: A second locus for the 5S multigene family inSecale L.: sequence divergence in two lineages of the family. — Genome32: 456–467.
Röder, M. S., Sorretta, M. E., Tanksley, S. D., 1992: 5S ribosomal gene clusters in wheat pulsed field gel electrophoresis reveals a high degree of polymorphism. — Mol. Gen. Genet.232: 215–220.
Schneeberger, R. G., Creissen, G. P., Cullis, C. A., 1989: Chromosomal and molecular analysis of 5S RNA gene organization in flax. — Gene83: 75–84.
Scoles, G. J., Gill, B. X., Xin, Z.-Y., Clarke, B. C., McIntyre, C. L., Chapman, C., Appels, R., 1988: Frequent duplication and deletion events in the 5S RNA genes and the associated spacer regions of theTriticeae. — Pl. Syst. Evol.160: 105–122.
Smith, G. P., 1976: Evolution of repeated DNA sequences by unequal crossover. — Science191: 528–535.
Sørensen, P. D., Frederiksen, S., 1991: Characterization of human 5S rRNA genes. — Nucleic Acids Res.19: 4147–4151.
Specht, T., Wolters, J., Erdmann, J. A., 1991: Compilation of 5S rRNA and 5S rRNA gene sequences. — Nucl. Acids Res.19: 2189–2191.
Steele, K. P., Holsinger, K. E., Jansen, R. K., Taylor, D. W., 1991: Assessing the reliability of 5S rRNA sequence data for phylogenetic analysis in green plants. — Mol. Biol. Evol.8: 240–248.
Vakhitov, V. A., Nikonorov, Yu., M., 1989: Nucleotide sequence of large 5S DNA repeat in diploid wheatTriticum monococcum L. — Biopolimery I Kletka5: 58–62.
, 1986: Determination of the number of copies of genes coding for 5S rRNA and tRNA in the genomes of 43 species of wheat andAegilops. — Genetika22: 676–683.
, 1989: Nucleotide sequences of 5S rRNA genes of polyploid wheat species andAegilops species. — Molekulyarnaya Biologiya23: 431–440.
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Sastri, D.C., Hilu, K., Appels, R. et al. An overview of evolution in plant 5S DNA. Pl Syst Evol 183, 169–181 (1992). https://doi.org/10.1007/BF00940801
Received:
Revised:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00940801