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ATy1-copia group retrotransposon sequence in a vertebrate

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Summary

We have used the polymerase chain reaction (PCR) to isolate a sequence characteristic of aTy1-copia group retrotransposon from the genome of the herring (Clupea harengus). This is the firstTy1-copia group retrotransposon sequence described in a vertebrate. Phylogenetic comparison of this sequence with other members of this group of retrotransposons shows that it resembles more closely some Tyl-copia group members fromDrosophila melanogaster than other group members in plants and fungi. These observations provide further evidence that theTy1-copia group LTR retrotransposons span many of the major eukaryote species boundaries, suggesting that horizontal transmission between different species has played a role in the evolution of this retrotransposon group.

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References

  • Bingham PM, Zachar Z (1989) Retrotransposons and the FB element fromDrosophila melanogaster. In: Berg DE, Howe MM (eds). Mobile DNA. American Society for Microbiology, Washington DC, pp 485–502

    Google Scholar 

  • Boekc J (1989) Transposable elements inSaccharomyces cerevisiae. In: Berg DE, Howe MM (eds). Mobile DNA. American Society for Microbiology, Washington DC, pp 335–374

    Google Scholar 

  • Daniels SB, Strausbaugh LD, Ehrman L, Armstrong R (1984) Sequences homologous to P elements occur inDrosophila paulistorum. Proc Natl Acad Sci USA 81:6794–6797

    Google Scholar 

  • Devereux J, Haeberli P, Smithies O (1984) A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387–395

    Google Scholar 

  • Doolittle RE, Feng DF (1990) Nearest neighbour procedure for relating progressively aligned amino acid sequences. Methods in Enzymol 183:659–669

    Google Scholar 

  • Doolittle RE, Feng DF, Johnson MS, McClure MA (1989) Origins and evolutionary relationships of retroviruses. Quar Rev Biol 64:1–29

    Google Scholar 

  • Feng DF, Doolittle RE (1987) Progressive sequence alignment as a prerequisite to correct phylogenetic trees. J Mol Evol 25:351–360

    Google Scholar 

  • Flavell AJ (1992) The evolution ofTy1-copia group retrotransposons in cukaryotes. Genetica 85: (In press)

  • Flavell AJ, Smith DB, Kumar A (1992) Extreme heterogeneity ofTy1-copia group retrotransposons in plants. Mol Gen Genet 231:233–242

    Google Scholar 

  • Grandbastien M-A, Spielmann A, Caboche M (1989)Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337:376–380

    Google Scholar 

  • Grandbastien MA (1992) Retroclements in higher plants. Trends Genet 8 : (in press)

  • Higgins DG, Sharp PM (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene 73:237–244

    Google Scholar 

  • Houck MA, Clark JB, Peterson KR, Kidwell MG (1991) Possible horizontal transfer ofDrosophila genes into the miteProctolaelaps regalis. Science 253:1125–1129

    Google Scholar 

  • Konieczny A, Voytas DF, Cummings DF, Ausubel FM (1991) A superfamily ofArabidopsis thaliana retrotransposons. Genetics 127:801–809

    Google Scholar 

  • Miller DW, Miller LK (1982) A virus mutant with the insertion of acopia-like transposable element. Nature 299:562–564

    Google Scholar 

  • Mizrokhi LJ, Mazo AM (1990) Evidence for horizontal transmission of the mobile element jockey between differentDrosophila species. Proc Natl Acad Sci USA 87:9216–9220

    Google Scholar 

  • Rothnie HM, McCurrach KJ, Glover LA, Hardman N (1991) Retrotransposon-like nature of Tpl elements: implications for the organization of highly repetitive, hypermethylated DNA in the genome ofPhysarum polycephalum. Nucleic Acids Res 19:279–286

    Google Scholar 

  • Teich N (1984) Taxonomy of retroviruses. In: Weiss R, Teich N, Varmus H, Coffin J (eds) RNA tumor viruses. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York

    Google Scholar 

  • Temin HM (1980) Origin of retroviruses from cellular moveable genetic elements. Cell 21:599–600

    Google Scholar 

  • Varmus HE, Brown P (1989) Retroviruses. In: Berg DE, Howe MM (eds). Mobile DNA. American Society for Microbiology, Washington DC, pp. 53–108

    Google Scholar 

  • Xiong Y, Eickbush TH (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9:3353–3362

    Google Scholar 

  • Yuki SS, Ishimaru S, Inouye S, Saigo K (1986) Identification of genes for reverse transcriptase-like enzymes in twoDrosophila retrotransposons,412 and gypsy; a rapid detection method of reverse transcriptase genes using YXDD box probes. Nucleic Acids Res 14:3017–3030

    Google Scholar 

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Flavell, A.J., Smith, D.B. ATy1-copia group retrotransposon sequence in a vertebrate. Molec. Gen. Genet. 233, 322–326 (1992). https://doi.org/10.1007/BF00587596

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