Skip to main content
Log in

Isolation of the yeast phosphoglyceromutase gene and construction of deletion mutants

  • Published:
Molecular and General Genetics MGG Aims and scope Submit manuscript

Summary

The PGM1 gene (also called GPM; Fraenkel 1982) coding for phosphoglyceromutase was isolated by functional complementation. When present on a multicopy vector and introduced into yeast cells it led to an about eightfold increase in specific enzymatic activity. This apparent overproduction was confirmed by SDS-polyacrylamide gel electrophoresis of crude extracts and at the transcriptional level by Northern analysis. By subcloning of the yeast DNA insertions of the plasmids originally isolated the PGM1 coding region was located within a 1.3 kb SalI-HindIII fragment. Integration at the chromosomal locus confirmed that the PGM1 gene had indeed been isolated. Southern analysis of genomic digests showed the same restriction patterns as the cloned sequences. However, a BamHI restriction polymorphism was observed. Furthermore, a repetitive element was found in the PGM1 flanking region. Finally, the chromosomal copy of the gene was deleted by replacement with a URA3 marker. The deletion mutants showed that the gene is not essential for yeast growing in the presence of a combination of glycerol and ethanol. However, growth was inhibited by glucose and neither glycerol nor ethanol alone were sufficient to support growth.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Aguilera A (1986) Deletion of the phosphoglucose isomerase structural gene makes growth and sporulation glucose-dependent in Saccharomyces cerevisiae. Mol Gen Genet 204:310–316

    Google Scholar 

  • Aguilera A, Zimmermann FK (1986) Isolation and molecular analysis of the phosphoglucose isomerase structural gene of Saccharomyces cerevisiae. Mol Gen Genet 202:83–89

    Google Scholar 

  • Beggs JD (1978) Transformation of yeast by a replicating hybrid plasmid. Nature 275:104–108

    Google Scholar 

  • Birnboim HC (1983) A rapid alkaline extraction method for the isolation of plasmid DNA. Methods Enzymol 100:243–255

    Google Scholar 

  • Bolivar F, Backman K (1979) Plasmids of Escherichia coli as cloning vectors. Methods Enzymol 68:245–267

    Google Scholar 

  • Britton P, Murfitt D, Parra F, Jones-Mortimer MC, Kornberg HL (1982) Phosphotransferase-mediated regulation of carbohydrate utilization in Escherichia coli K12: identification of the products of genes on the specialized transducing phages λiex (ccr) and λgsr (tgs). EMBO J 1:907–911

    Google Scholar 

  • Broach JR, Strathern JN, Hicks JB (1979) Transformation in yeast: Development of a hybrid cloning vector and isolation of the CAN1 gene. Gene 8:121–133

    Google Scholar 

  • Cameron JR, Loh EY, Davies RW (1979) Evidence for transposition of dispersed repetitive DNA families in yeast. Cell 16:739–751

    Google Scholar 

  • Chisholm GE, Genbauffe FS, Cooper TG (1984) tau, a repeated DNA sequence in yeast. Proc Natl Acad Sci USA 81:2965–2969

    Google Scholar 

  • Ciriacy M, Breitenbach I (1979) Physiological effects of seven different blocks in glycolysis in Saccharomyces cerevisiae. J Bacteriol 139:152–160

    Google Scholar 

  • Ciriacy M, Williamson VM (1981) Analysis of mutations affecting Ty-mediated gene expression in Saccharomyces cerevisiae. Mol Gen Genet 182:159–163

    Google Scholar 

  • Clewell DB (1972) Nature of ColE1 plasmid replication in Escherichia coli in the presence of chloramphenicol. J Bacteriol 110:667–676

    Google Scholar 

  • Clifton D, Fraenkel DG (1981) The gcr (glycolysis regulation) mutation of Saccharomyces cerevisiae. J Biol Chem 256:13074

    Google Scholar 

  • Clifton D, Weinstock SB, Fraenkel DG (1978) Glycolysis mutants in Saccharomyces cerevisiae. Genetics 88:1–11

    Google Scholar 

  • Cohen SN, Chang ACY, Hsu L (1972) Nonchromosomal antibiotic resistance in bacteria: Genetic transformation of Escherichia coli by R-factor DNA. Proc Natl Acad Sci USA 69:2110–2114

    Google Scholar 

  • Falco SC, Li Y, Broach JR, Botstein D (1982) Genetic properties of chromosomally integrated 2 μ plasmid DNA in yeast. Cell 29:573–584

    Google Scholar 

  • Fraenkel DG (1982) Carbohydrate metabolism. In: Strathern, Jones, Broach (eds) The molecular biology of the yeast Saccharomyces — Metabolism and gene expression. Cold Spring Harbor Laboratory, NY, pp 1–37

    Google Scholar 

  • Fröhlich KU, Entian KD, Mecke D (1984) Cloning and restriction analysis of the hexokinase PII gene of the yeast Saccharomyces cerevisiae. Mol Gen Genet 194:144–148

    Google Scholar 

  • Guarente L (1984) Yeast promoters: Positive and negative elements. Cell 36:799–800

    Google Scholar 

  • Heinisch J (1986) Isolation and characterization of the two structural genes coding for phosphofructokinase in yeast. Mol Gen Genet 202:75–82

    Google Scholar 

  • Hitzeman RA, Hagie FE, Hayflick JS, Chen CY, Seeburg PH, Derynck R (1982) The primary structure of the Saccharomyces cerevisiae gene for 3-phosphoglycerate kinase. Nucleic Acids Res 10:7791–7808

    Google Scholar 

  • Holland MJ, Holland JP (1978) Isolation and identification of yeast messenger ribonucleic acids coding for enolase, glyceraldehyde-3-phosphate dehydrogenase, and phosphoglycerate kinase. Biochemistry 17:4900–4909

    Google Scholar 

  • Holland MJ, Holland JP (1979) Isolation and characterization of a gene coding for glyceraldehyde-3-phosphate dehydrogenase from Saccharomyces. J Biol Chem 254:5466–5474

    Google Scholar 

  • Holland MJ, Holland JP, Thill GP, Jackson KA (1981) The primary structure of two yeast enolase genes. Homology between the 5′ noncoding flanking regions of yeast enolase and glyceraldehyde-3-phosphate dehydrogenase genes. J Biol Chem 256:1385–1395

    Google Scholar 

  • Hollenberg CP, Roggenkamp R, Erhart E, Breunig K, Reipen G (1983) The expression of bacterial β-lactamase and its application to gene technology in yeast. Proc Alko Yeast Symp, Helsinki, pp 73–90

  • Holzer H (1976) Catabolite inactivation in yeast. TIBS 1:178–181

    Google Scholar 

  • Kawasaki G, Fraenkel DG (1982) Cloning of yeast glycolysis genes by complementation. Biochem Biophys Res Commun 108:1107–1112

    Google Scholar 

  • Lam KB, Marmur J (1977) Isolation and characterization of Saccharomyces cerevisiae glycolytic pathway mutants. J Bacteriol 130:746–749

    Google Scholar 

  • Lobo Z (1984) Saccharomyces cerevisiae aldolase mutants. J Bacteriol 160:222–226

    Google Scholar 

  • Lobo Z, Maitra PK (1977) Resistance to 2-deoxyglucose in yeast: A direct selection of mutants lacking glucose-phosphorylating enzymes. Mol Gen Genet 157:297–302

    Google Scholar 

  • Maitra PK, Lobo Z (1971) A kinetic study of glycolytic enzyme synthesis in yeast. J Biol Chem 246:475–482

    Google Scholar 

  • McMaster GK, Carmichael CG (1977) Analysis of single-and double-stranded nucleic acids on polyacrylamide and agarose gels by using glyoxal and acridine orange. Proc Natl Acad Sci USA 74:4835–4838

    Google Scholar 

  • Nasmyth KA, Reed SI (1980) Isolation of genes by complementation in yeasts: Molecular cloning of a cell cycle gene. Proc Natl Acad Sci USA 77:2119–2123

    Google Scholar 

  • Nasmyth KA, Tatchell K (1980) Transposable yeast mating type loci. Cell 19:753–764

    Google Scholar 

  • Orr-Weaver TL, Szostak JW, Rothstein RJ (1981) Yeast transformation: A model system for the study of recombination. Proc Natl Acad Sci USA 78:6354–6358

    Google Scholar 

  • Rey FJ del, Donahue TF, Fink GR (1982) sigma, a repetitive element found adjacent to tRNA genes of yeast. Proc Natl Acad Sci USA 79:4138–4142

    Google Scholar 

  • Rigby PWJ, Dieckman M, Rhodes C, Berg P (1977) Labeling deoxyribonucleic acids to high specific activity in vitro by nick translation with DNA polymerase I. J Mol Biol 151:1146–1152

    Google Scholar 

  • Rodicio R, Zimmermann FK (1985) Cloning of maltase regulatory genes in Saccharomyces cerevisiae I. Isolation of the MAL2-8c regulatory gene. Curr Genet 9:539–545

    Google Scholar 

  • Rose M, Winston F (1984) Identification of a Ty insertion within the coding sequence of the S. cerevisiae URA3 gene. Mol Gen Genet 193:557–565

    Google Scholar 

  • Rothstein RJ (1983) One step gene disruption in yeast. Methods Enzymol 101:202–211

    Google Scholar 

  • Sasaki R, Utsumi S, Sugimoto E, Chiba H (1976) Subunit structure and multifunctional properties of yeast phosphoglyceromutase. Eur J Biochem 66:523–533

    Google Scholar 

  • Seehaus T, Rodicio R, Heinisch J, Aguilera A, Schmitt HD, Zimmermann FK (1985) Specific gene probes as tools in yeast taxonomy. Curr Genet 10:103–110

    Google Scholar 

  • Struhl K, Stinchcomb DT, Scherer S, Davis RW (1979) High frequency transformation of yeast: Autonomous replication of hybrid DNA molecules. Proc Natl Acad Sci USA 76:1035–1039

    Google Scholar 

  • Tautz D, Rentz M (1983) An optimized freeze squeeze method for the recovery of DNA fragments from agarose gels. Anal Biochem 132:14–19

    Google Scholar 

  • Thomas PS (1983) Hybridization of denatured RNA transferred or dotted to nitrocellulose paper. Methods Enzymol 100:255–266

    Google Scholar 

  • Wahl GM, Stern M, Stark GR (1979) Efficient transfer of large DNA fragments from agarose gels to diazobenzyloxymethylpaper and rapid hybridization by using dextran sulfate. Proc Natl Acad Sci USA 76:3683–3687

    Google Scholar 

  • Williamson VM, Young ET, Ciriacy M (1981) Transposable elements associated with constitutive expression of yeast alcohol dehydrogenase II. Cell 23:605–614

    Google Scholar 

  • Zamenhoff S (1957) Preparation and assay of deoxyribonucleic acids from animal tissue. Methods Enzymol 3:702–704

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Additional information

Communicated by C.P. Hollenberg

Rights and permissions

Reprints and permissions

About this article

Cite this article

Rodicio, R., Heinisch, J. Isolation of the yeast phosphoglyceromutase gene and construction of deletion mutants. Mol Gen Genet 206, 133–140 (1987). https://doi.org/10.1007/BF00326548

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00326548

Key words

Navigation