Skip to main content
Log in

Restriction analysis of chromosomal sequences homologous to single-copy fragments cloned from small polydisperse circular DNA (spcDNA)

  • Original Investigations
  • Published:
Human Genetics Aims and scope Submit manuscript

Summary

Restriction fragments from the fraction of small polydisperse circular DNA (spcDNA) were cloned in pBR322. The spcDNA was prepared from cell cultures derived from an angiofibroma of a patient with tuberous sclerosis (TS). Such cultures have been shown previously to contain increased amounts of spcDNA. Four cloned spcDNA fragments containing single-copy sequences were chosen to characterize the homologous chromosomal DNA segments by restriction analysis. When used as hybridization probes, these four fragments generate well-defined nonvariable patterns in the chromosomal DNA from healthy donors. The restriction patterns obtained with one of the fragments (D-C4) can best be interpreted by assuming the presence of two copies of the homologous sequences in chromosomal DNA. A second sequence, A-B4, occurs at least 30–50 times in the haploid human genome. In both cases the duplicated regions span relatively large segments of DNA.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Bertelsen AH, Humayun MZ, Karfopoulos SG, Rush MG (1982) Molecular characterization of small polydisperse circular desoxyribonucleic acid from an African green monkey cell line. Biochemistry 21:2076–2085

    Google Scholar 

  • Blin V, Stafford DL (1976) A general method for isolation of high molecular weight DNA from eukaryotes. Nucleic Acids Res 3: 2303–2308

    Google Scholar 

  • Calabretta B, Robberson DL, Barrera-Saldana HA, Lambron TP, Saunders GF (1982) Genome instability in a region of human DNA enriched in Alu repeat sequences. Nature 296:219–225

    Google Scholar 

  • Dietrich C, Krone W, Hesse G (1986) Chromosomal anomalies in cell cultures derived from angiofibromas of patients with tuberous sclerosis. 7th International Congress of Human Genetics, Berlin 1986, poster abstract no. T III.33, p 569

  • Dobner PR, Kawasaki ES, Yu LA, Bancroft FC (1981) Thyroid or glucocorticoid hormones induce pregrowth hormone mRNA and its probable nuclear precursor in rat pituitary cells. Proc Natl Acad Sci USA 78:2230–2234

    Google Scholar 

  • Feinberg AP, Vogelstein B (1983) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132:6–13

    Google Scholar 

  • Fujimoto S, Tsuda T, Toda M, Yamagishi H (1985) Transposon-like sequences in extrachromosomal circular DNA from mouse thymocytes. Proc Natl Acad Sci USA 82:2072–2076

    Google Scholar 

  • Hillova J, Hill M, Belehradek J, Mariage-Samson R, Marx M (1983) Amplification of the provirus region in Rous sarcoma virus-transformed Chinese hamster cells and segregation of the amplified copies in somatic cell hybrids. Virology 128:1–15

    Google Scholar 

  • Hirt B (1967) Selective extraction of polyoma DNA from infected mouse cell cultures. J Mol Biol 26:365–369

    Google Scholar 

  • Hollis M, Hindley J (1986) Human Sau3A repeated DNA is enriched in small polydisperse circular DNA from normal lymphocytes. Gene 46:153–160

    Google Scholar 

  • Hu N, Messing J (1982) The making of strand-specific M13 probes. Gene 17:271–277

    Google Scholar 

  • Jones SJ, Potter SS (1985a) L1 sequence in HeLa extrachromosomal circular DNA: evidence for circularization by homologous recombination. Proc Natl Acad Sci USA 82:1989–1993

    Google Scholar 

  • Jones SJ, Potter SS (1985b) Characterization of cloned human alphoid satellite with an unusual monomeric construction: evidence for enrichment in HeLa small polydisperse circular DNA. Nucleic Acids Res 13:1027–1042

    Google Scholar 

  • Kazazian Jr HH, Wong C, Youssoufian H, Scott AF, Phillips DG, Antonarakis SE (1988) Haemophilia A resulting from de novo insertion of L1 sequences represents a novel mechanism for mutation in man. Nature 332:164–166

    Google Scholar 

  • Krolweski JJ, Rush MG (1984) Some extrachromosomal circular DNAs containing the Alu family of dispersed repetitive sequences may be reverse transcripts. J Mol Biol 174:31–34

    Google Scholar 

  • Krolewski JJ, Bertelsen AH, Humayun MZ Rush MG (1982) Members of the Alu family of interspersed, repetitive DNA sequences are in the small circular DNA population of monkey cells grown in culture. J Mol Biol 154:399–415

    Google Scholar 

  • Krolewski JJ, Schindler CW, Rush MG (1984) Structure of extrachromosomal circular DNAs containing both the Alu family of dispersed repetitive sequences and other regions of chromosomal DNA. J Mol Biol 174:41–54

    Google Scholar 

  • Kunisada T, Yamagishi H (1984) Sequence repetition and genomic distribution of small polydisperse circular DNA purified from HeLa cells. Genet 31:213–223

    Google Scholar 

  • Neidlinger C, Assum G, Krome W, Dietrich C, Hochsattel R, Klotz G (1988) Increased amounts of small polydisperse circular DNA (spcDNA) in angiofibroma-derived cell cultures from parients with tuberous sclerosis (TS). Hum Genet 79:286–288

    Google Scholar 

  • Paulson KE, Deka N, Schmid CW, Misra R, Schindler CW, Rush MG, Kadyk L, Leinwand L (1985) A transposon-like element in human DNA. Nature 316:359–361

    Google Scholar 

  • Rush MG, Misra R (1985) Extrachromosomal DNA in eukaryotes. Plasmid 14:177–191

    Google Scholar 

  • Schindler CW, Rush MG (1985a) The KpnI family of long interspersed nucleotide sequences is present on discrete sizes of circular DNA in monkey (BSC-1) cells. J Mol Biol 181:161–173

    Google Scholar 

  • Schindler CW, Rush MG (1985b) Discrete size classes of monkey extrachromosomal circular DNA containing the L1 family of long interspersed nucleotide sequences are produced by a general nonsequence-specific mechanism. Nucleic Acids Res 13:8247–8258

    Google Scholar 

  • Shmookler Reis RJ, Lumpkin CK, McGill JR, Riabowol KT, Goldstein S (1983) Extrachromosomal circular copies of an “Inter-Alu” unstable sequence in human DNA are amplified during in vitro and in vivo ageing. Nature 301:394–398

    Google Scholar 

  • Stanfield SW, Helinski DR (1984) Cloning and characterization of small circular DNA from Chinese hamster ovary cells. Mol Cell Biol 4:173–180

    Google Scholar 

  • Steele PE, Martin MA, Rabson AB, Bryan T, O'Brien SJ (1986) Amplification and chromosomal dispersion of human endogenous retroviral sequences. J Virol 59:545–550

    Google Scholar 

  • Toda M, Yamagishi H (1984) Appearance of extrachromosomal circular DNA in lymphocytes from developing chick bursa. Dev Growth Differ 26:197–204

    Google Scholar 

  • Varskavsky A (1981) On the possibility of metabolic control of “replicon misfiring”: relationship to emergence of malignant phenotypes in mammalian cell lineages. Proc Natl Acad Sci USA 78:3673–3677

    Google Scholar 

  • Yamagishi H (1985) Role of mammalian circular DNA in cellular differentiation. Bioessays 4:218–221

    Google Scholar 

  • Yamagishi H, Kunisada T, Iwakura Y, Nishimune Y, Ogiso Y, Matsushiro A (1983) Emergence of the extrachromosomal circular DNA complexes as one of the earliest signals of cellular differentiation in the early development of mouse embryo. Dev Growth Differ 25:563–569

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Assum, G., Böckle, B., Fink, T. et al. Restriction analysis of chromosomal sequences homologous to single-copy fragments cloned from small polydisperse circular DNA (spcDNA). Hum Genet 82, 249–254 (1989). https://doi.org/10.1007/BF00291164

Download citation

  • Received:

  • Revised:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00291164

Keywords

Navigation