Skip to main content
Log in

Characterization of a phosphodiesterase component in a forest soil extract

  • Published:
Biology and Fertility of Soils Aims and scope Submit manuscript

Summary

A bis-(p-nitrophenyl) phosphatase (BPN-Pase) was extracted from a forest soil and fractionated by DEAE-cellulose column chromatography into seven fractions (1, 2, 3, 4, 5, 6 and 7). The main fraction (fraction 5) was further fractionated into 3 subfraction (fractions 1, 2 and 3) by affinity chromatography for nuclease. The properties of the BPNPase in subfraction 3 were characterized and the results are reported in this article. Subfraction 3, which had a peak at about 278 run in the UV absorption spectrum, hydrolyzed 2′,3′-cyclic-nucleotides more readily than 3′,5′-cyclicnucleotides, adenylyl-(3′ → 5′)uridine, uridylyl-(3′ → 5′)adenosine, thymidine 3′-p-nitrophenyl phosphate, thymidine 5′-p-nitrophenyl phosphate, p-nitrophenyl phosphate and BPNP. Subfraction 3 hydrolyzed BPNP into 2 mol p-nitrophenyl and 1 mol inorganic phosphate during incubation. Apparent molecular weight of the BPNPase was estimated to be about 58 000 by gel filtration. The BPNPase activity had a pH optimum at 5.0 and was inhibited by Hg2+ and slightly inhibited by F and PO 3−4 .

These observations suggest that the BPNPase is subfraction 3 has been constituted mainly with 2′,3′cyclic-nucleotide 2′-phosphodiesterase [EC 3.1.4.16] or 2′,3′-cyclic-nucleotide 3′-phosphodiesterase [EC 3.1.4.37].

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • Anraku Y (1964) A new cyclic phosphodiesterase having a 3′-nucleotidase activity from Escherichia coli B. J Biol Chem 239; 3412–3419

    Google Scholar 

  • Andrew P (1965) The gel-filtration of proteins related to their molecular weights over a wide range. Biochem J 96; 595–606

    Google Scholar 

  • Bernardi A, Bernardi G (1971) Spleen acid nuclease. In: Boyer PD (ed) The enzymes, 3rd edn, vol 4. Academic Press, New York, London, pp 329–336

    Google Scholar 

  • Beernardi G, Appella E, Zito R (1965) Studies on acid deoxyribonuclease. III. Physical and chemical properties of hog spleen acid deoxyribonuclease. Biochem 4:1725–1729

    Google Scholar 

  • Eivazi F, Tabatabai MA (1977) Phosphodiesterases in soils. Soil Biol Biochem 9:167–172

    Google Scholar 

  • Frischaut AM, Eckstein F (1973) Purification of a phosphodiesterase from Bothrops atrox venom by affinity chromatography. Eur J Biochem 32:479–485

    Google Scholar 

  • Hayano K (1977) Extraction and properties of phosphodiesterase from a forest soil. Soil Biol Biochem 9:221–223

    Google Scholar 

  • Hayano K (1983) Fractionation by DEAE-cellulose column chromatography and some properties of phosphodiesterase extracted from an Andosol under forest. Soil Sci Plant Nutr 29:175–184

    Google Scholar 

  • Ishii T, Hayano K (1974) A method for the estimation of phosphodiesterase activity in soil. Jpn J Soil Sci Plant Nutr 45:505–508

    Google Scholar 

  • Kakii K, Yoshida H (1977) Phosphodiesterase-phosphomonoesterases from Fusarium moniliforme. A method of purification and identification of isozymes. J Biochem 81:1691–1697

    Google Scholar 

  • Khorana HG (1961) Phosphodiesterases. In: Boyer PD, Lardy H, Myrback K (eds). The enzymes, 2nd edn, vol 5. Academic Press, New York,London pp 79–94

    Google Scholar 

  • Laskowski M (1971) Venom exonuclease. In: Boyer PD (ed) The enzymes, 3rd edn, vol. 4. Academic Press, New York, London, pp 313–328

    Google Scholar 

  • Neu HC (1968) The cyclic phosphodiesterase of the Enterobacteriaceae. Biochem 7:3774–3780

    Google Scholar 

  • Razzell WE (1963) Phosphodiesterases. In: Method in enzymology, vol. 6. Colowick SP, Caplan NO (ed) Academic Press, New York, London, pp 236–258

    Google Scholar 

  • Shimada K, Sugino Y (1969) Cyclic phosphodiesterase having 3′-nucleotidase activity from Bacillus subtilis. Purification and some properties of the enzyme. Biochim Biophys Acta 185:367–380

    Google Scholar 

  • Taussky HH, Shorr E (1952) A microcolorimetric method for the determination of inorganic phosphorus. J Biol Chem 202:675–685

    Google Scholar 

  • Uchida T, Egami F (1971) Microbial ribonucleases with special reference to RNases T1, T2, N1 and U2. In: Boyer PD (ed). The enzymes, 3rd edn, vol. 4. Academic Press, New York, London, pp 205–250

    Google Scholar 

  • Unemoto T, Hayashi M (1969) Chloride ion as a modifier of 2′, 3′-cyclic phosphodiesterase purified from halophilic Vibrio alginolyticus. Biochim Biophys Acta 171:89–102

    Google Scholar 

  • Yoshida H (1973) Acid phosphatases from Fusarium moniliforme. III. Mode of action of acid phosphatase II on bis-(pnitrophenyl)phosphate. J Biochem 73:23–29

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Rights and permissions

Reprints and permissions

About this article

Cite this article

Hayano, K. Characterization of a phosphodiesterase component in a forest soil extract. Biol Fert Soils 3, 159–164 (1987). https://doi.org/10.1007/BF00255777

Download citation

  • Received:

  • Issue Date:

  • DOI: https://doi.org/10.1007/BF00255777

Key words

Navigation