Abstract
The heteroplasmy of chloroplast DNA (cpDNA) observed in Medicago sativa L., which involves the presence (type B) or absence (type A) of an Xba I restriction site, was examined using closed fragments covering the variable XbaI site from type-A and type-B cpDNA. The 6.2-kb PstI fragment of DNA from type-A cpDNA (−XbaI) and from type-B cpDNA (+XbaI) was cloned into pUC19 plasmids. EcoRI fragments bearing the variable XbaI site from the type-A and type-B 6.2-kb PstI fragments were subcloned into pUC19. DNA sequences of both types of the 696-bp EcoRI fragments were determined and computer-assisted analysis of the sequence data carried out. Type-A cpDNA was found to differ from type-B cpDNA by 1 base, a G to T conversion, which results in a non-recognition site for XbaI in the type-A cpDNA. The sequence difference was in a non-coding region. Cloning and sequencing of the fragments verified the individual identity of the type-A and type-B cpDNA.
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Aldrich J, Cherney BW, Merlin E, Christopherson L (1988) The role of insertions/deletions in the evolution of the intergenic region between psbA and trnH in the chloroplast genome. Curr Genet 14:137–146
Birnboim HC, Doly J (1979) A rapid alkaline extraction method for screening recombinant plasmid DNA. Nucleic Acids Res 7:1513–1523
Bohnert HJ, Loffelhardt W (1982) Cyanelle DNA from Cyanophora paradoxa exists in two forms due to intramolecular recombination. FEBS Lett 150:403–406
Chiu W-L, Sears BB (1985) Recombination between chloroplast DNAs does not occur in sexual crosses of Oenothera. Mol Gen Genet 198:525–528
Fitter JT, Rose RJ (1993) Investigation of chloroplast DNA heteroplasmy in Medicago sativa L. using cultured tissue. Theor Appl Genet 86:65–70
Fluhr R, Aviv D, Galun E, Edelman M (1984) Generation of heteroplastidic Nicotiana cybrids by protoplast fusion: analysis for plastid recombiant types. Theor Appl Genet 67:491–497
Govindaraju DR, Wagner DB, Smith GP, Dancik BP (1988) Chloroplast DNA variation within individual trees of a Pinus banksiana- Pinus contorta sympatric region. Can J For Res 18:1347–1350
Johnson LB, Palmer JD (1989) Heteroplasmy of chloroplast DNA in Medicago. Plant Mol Biol 12:3–11
Kemble RJ (1987) A rapid, single leaf, nucleic acid assay for determining the cytoplasmic organelle complement of rapeseed and related Brassica species. Theor Appl Genet 73:364–370
Lee DJ, Blake TK, Smith SE (1988) Biparental inheritance of chloroplast DNA and the existence of heteroplasmic cells in alfalfa. Theor Appl Genet 76:545–549
Masoud SA, Johnson LB, Sorenson EL (1990) High transmission of paternal plastid DNA in alfalfa plants demonstrated by restriction fragment polymorphic analysis. Theor Appl Genet 79:49–55
Medgyesy P, Fejes E, Maliga P (1985) Interspecific chloroplast recombination in a Nicotiana somatic hybrid. Proc Natl Acad Sci USA 82:6960–6964
Ngernprasirtsiri J, Kobayashi H, Akazawa T (1988) DNA methylation as a mechanism of transcriptional regulation in nonphotosynthetic plastids in plant cells. Proc Natl Acad Sci USA 85:4750–4754
Palmer JD (1983) Chloroplast DNA exists in two orientations. Nature 301:92
Palmer JD (1985) Evolution of chloroplast and mitochondrial DNA in plants and algae. In: MacIntyre RJ (ed) Molecular evolutionary genetics. Plenum Press, New York, pp 131–240
Palmer JD, Osorio B, Aldrich J, Thompson WF (1987) Chloroplast DNA evolution among legumes: loss of a large inverted repeat occurred prior to other sequence rearrangements. Curr Genet 11:275–286
Rose RJ, Johnson LB, Kemble RJ (1986) Restriction endonuclease studies on the chloroplast and mitochondrial DNAs of alfalfa (Medicago sativa L.) protoclones. Plant Mol Biol 6:331–338
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning:a laboratory manual. Cold Spring Harbor Press, Cold Spring Harbor, N.Y.
Schumann CM, Hancock JF (1989) Paternal inheritance of plastids in Medicago sativa. Theor Appl Genet 78:863–866
Scidman CE (1987) Transformation using calcium chloride. In: Ausubel FM (ed) Current protocols in molecular biology. Green Publishing Associates & Wiley-Interscience, New York, pp 1.8.1–1.8.3
Spreitzer RJ, Chastain CJ (1987) Heteroplasmic suppression of an amber mutation in the Chlamydomonas chloroplast gene that encodes the large subunit of ribulosebisphosphate carboxylase/oxygenase. Curr Genet 11:611–616
Sutton BCS, Flanagan DJ, Gawley JR, Newton CH, Lester DT, El-Kassaby YA (1991) Inheritance of chloroplast and mitochondrial DNA in Picea and composition of hybrids from introgression zones. Theor Appl Genet 82:242–248
Thanh ND, Medgyesy P (1989) Limited chloroplast gene transfer via recombination overcomes plastome-genome incompatability between Nicotiana tabacum and Solarium tuberosum. Plant Mol Biol 12:87–93
Tsudzuki J, Nakashima K, Tsudzuki T, Hiratsuka J, Shibata M, Wakasugi T, Sugiura M (1992) Chloroplast DNA of black pine retains a residual inverted repeat lacking rRNA genes: nucleotide sequences of trnQ, trnK, psbA, trnI and trnH and the absence of rps16. Mol Gen Genet 232:206–214
White EE (1990) Chloroplast DNA in Pinus monticola. Theor Appl Genet 79:119–124
Yu W, Spreitzer RJ (1992) Chloroplast heteroplasmy is stabilized by an amber-supressor tryptophan tRNACUA. Proc Natl Acad Sci USA 89:3904–3907
Zhang D, Spreitzer RJ (1990) Evidence for informational suppression within the chloroplast of Chlamydomonas reinhardtii. Curr Genet 17:49–53
Zhu T, Mogensen HL, Smith SE (1993) Quantitive, three-dimensional analysis of alfalfa egg cells in two genotypes:implications for biparental plastid inheritance. Planta 190:143–150
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Fitter, J.T., Thomas, M.R., Rose, R.J. et al. Heteroplasmy of the chloroplast genome of Medicago sativa L. cv ‘Regen S’' confirmed by sequence analysis. Theoret. Appl. Genetics 93, 685–690 (1996). https://doi.org/10.1007/BF00224063
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DOI: https://doi.org/10.1007/BF00224063