Abstract
The protein synthetic machinery is essential to all living cells and is one of the major targets for antibiotics. Knowledge of the structure and function of the ribosome and its associated factors is key to understanding the mechanism of drug action. Conversely, drugs have been used as tools to probe the translation cycle, thus providing a means to further our understanding of the steps that lead to protein synthesis. Our current understanding as to how antibiotics disrupt this process is reviewed here, with particular emphasis on the prokaryotic elongation cycle and those drugs that interact with ribosomal RNAs.
Similar content being viewed by others
Abbreviations
- EF :
-
Elongation factor
- IF :
-
Initiation factor
- RF :
-
Termination/release factor
- MLS B :
-
Macrolide, lincomycin, and streptogramin B antibiotics
References
Gräfe U (1992) Biochemie der Antibiotika: Struktur-Biosyn-these-Wirkmechanismus. Spektrum, Heidelberg Berlin New York
Gale EF, Cundliffe E, Reynolds PE, Richmond MH, Waring MJ (1981) The molecular basis of antibiotic action. Wiley, London
Nierhaus KH, Brimacombe R, Wittmann HG (1988) Inhibition of protein biosynthesis by antibiotics. In: Jackson GG, Schlumberger HD, Zeiler HJ (eds) Perspectives in antiinfective therapy. Vieweg, Braunschweig Wiesbaden
Wittmann HG (1986) Structure of ribosomes. In: Hardesty B, Kramer G (eds) Structure, function, and genetics of ribosomes. Springer, Berlin Heidelberg New York, pp 1–27
Noller HF (1991) Ribosomal RNA and translation. Annu Rev Biochem 60:191–227
Wittmann-Liebold B, Köpke AKE, Arndt E, Krömer W, Hatakeyama T, Wittmann HG (1990) Sequence comparison and evolution of ribosomal proteins and their genes. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The ribosome. Structure function and evolution. American Society for Microbiology, Washington, pp 598–616
Gutell RR (1994) Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994. Nucleic Acids Res 22:3502–3507
Gutell RR, Gray MW, Schnare MN (1993) A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures. Nucleic Acids Res 21:3055–3074
Brimacombe R, Amadja J, Stiege W, Schüler D (1988) A detailed model for the three-dimensional structure of E. coli 16S ribosomal RNA in situ in the 30S subunit. J Mol Biol 199:115–136
Stern S, Weiser B, Noller HF (1988) Model for the three-dimensional folding of 16S ribosomal RNA. J Mol Biol 204: 447–481
Brimacombe R (1995) The structure of ribosomal RNA: a three-dimensional jigsaw puzzle. Eur J Biochem 230:365–383
Mitchell P, Osswald M, Schüler D, Brimacombe R (1990) Selective isolation and detailed analysis of intra-RNA crosslinks induced in the large ribosomal subunit of Escherichia coli: a model for the tertiary structure of the tRNA binding domain in 23S RNA. Nucleic Acids Res 18:4325–4333
Ramakrishnan V, Gerchman SE, Golden BL, Hoffmann DW, Kycia JH, Porter SJ, White SW (1993) Structural studies on prokaryotic ribosomal proteins. In: Nierhaus KH, Franceschi F, Subramanian AR, Erdmann V, Wittmann-Liebold B (eds) The translational apparatus: structure, function, regulation, evolution. Plenum, New York, pp 533–544
Frank J, Zhu J, Penczek P, Li Y, Srivastava S, Verschoor A, Rademacher M, Grassucci R, Lata RK, Agrawal RK (1995) A model of protein synthesis based on cyro-electron microscopy of E. coli ribosomes. Nature 376:441–444
Stark H, Mueller F, Orlova EV, Schatz M, Dube P, Erdemir T, Zemlin F, Brimacombe R, van Heel M (1995) The 70 S Escherichia coli ribosome at 23 Å resolution: fitting the ribosomal RNA. Structure 3:815–821
Svergun DI, Pedersen JS, Serdyuk IN, Koch MH (1994) Solution scattering from 50S ribosomal subunit resolves inconsistency between electron microscopic models. Proc Natl Acad Sci USA 91:11826–11830
Capel MS, Engelman DM, Freeborn BR, Kjeldgaard M, Langer JA, Ramakrishnan V, Schindler DG, Schneider DK, Schoenborn BP, Sillers IY, Yabuki S, Moore PB (1987) A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli. Science 238:1403–1406
May RP, Nowotny V, Nowotny P, Voss H, Nierhaus KH (1991) Inter-protein distances within the large subunit from Escherichia coli ribosomes. EMBO J 11:373–378
Walleczek J, Schüler D, Stöffler-Meilicke M, Brimacombe R, Stöffler G (1988) A model for the spatial arrangement of the proteins in the large subunit of Escherichia coli ribosome. EMBO J 7:3571–3576
Yonath A (1992) Approaching atomic resolution in crystallography of ribosomes. Ann Rev Biophys Biomol Struc 21:77–93
Gualerzi CO, La Teana A, Spurio R, Canonaco MA, Severini M, Pon CL (1990) Initiation of protein biosynthesis in procaryotes: recognition of mRNA by ribosomes and molecular basis for the function of initiation factors. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The ribosome. Structure function and evolution. American Society for Microbiology, Washington, pp 281–291
Tate WP, Brown CM (1992) Translational termination: “stop” for protein synthesis or “pause” for regulation of gene expression. Biochemistry 31:2443–2450
Rheinberger HJ, Sternbach H, Nierhaus KH (1981) Three tRNA binding sites on E. coli ribosomes. Proc Natl Acad Sci USA 76:5310–5314
Nierhaus KH (1993) Solution of the ribosomal riddle: how the ribosome selects the correct aminoacyl-tRNA out of 41 similar contestants. Mol Microbiol 9:661–669
Moazed D, Noller HF (1986) Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes. Cell 47:985–994
Moazed D, Noller HF (1989) Interaction of tRNA with 23S rRNA in the ribosomal A, P and E sites. Cell 57:585–597
Moazed D, Noller HF (1989) Intermediate states in the movement of tRNA in the ribosome. Nature 342:142–148
Dabrowski M, Spahn CMT, Nierhaus KH (1995) Interaction of tRNAs with the ribosome at the A and P sites. EMBO J:14:4872–4882
Nierhaus KH, Beyer D, Dabrowski M, Schäfer MA, Spahn CMT, Wadzack J, Bittner JU, Burkhardt N, Diedrich G, Jünemann R, Kamp D, Voss H, Stuhrmann HB 1996 The elongating ribosome; Structural an functional aspects. Biochem Cell Biol (in press)
Hardesty B, Odom OW, Deng H-Y (1986) The movement of tRNA through ribosomes during peptide elongation: the displacement reaction model. In: Hardesty B, Kramer G (eds) Structure, function and, genetics of ribosomes. Springer, Berlin Heidelberg New York, pp 495–508
Nierhaus KH (1996) An elongation factor turn-on. Nature 379:491–492
Hausner TP, Geigenmüller U, Nierhaus KH (1988) The allosteric three-site model for the elongation cycle: new insight into the inhibition mechanisms of aminoglycosides, thiostrepton, and viomycin. J Biol Chem 263:13103–13111
Schilling-Bartetzko S, Bartetzko A, Nierhaus KH (1992) Kinetic and thermodynamic parameters for tRNA binding to the ribosome and for the translocation reaction. J Biol Chem 267:4703–4712
Mesters JR, Potapov AP, de Graaf JM, Kraal B (1994) Synergism between the GTPase activities of EF-Tu·GTP and EFG·GTP on empty ribosomes. Elongation factors as stimulators of the ribosomal oscillation between two conformations. J Mol Biol 242:644–654
Czworkowski J, Wang J, Steitz TA, Moore PB (1994) The crystal structure of elongation factor G complexed with GDP, at 2.7 Å resolution. EMBO J 13:3661–3668
Ævarsson A, Brazhnikov E, Garber M, Zheltonosova, Chirgadze Yu, Al-Karadaghi S, Svensson LA, Liljas A (1994) Three-dimensional structure of the ribosomal translocase: elongation factor G from Thermus thermophilus. EMBO J 13:3669–3677
Nissen P, Kjeldgaard M, Thirup S, Polekhina G, Reshtnikova L, Clark BFC, Nyborg J (1995) Crystal Structure of the Ternary Complex of Phe-tRNAPhe, EF-Tu, and a GTP Analog. Science 270:1464–1472
Geigenmüller U, Nierhaus KH (1990) Significance of the third tRNA binding site, the E site, on E. coli ribosomes for the accuracy of translation: an occupied E site prevents the binding of non-cognate aminoacyl-tRNA to the A site. EMBO J 9:4527–4533
Schroeder R (1994) Translation. dissecting RNA function. Nature 370:597–598
Cundliffe E (1990) Recognition Sites for Antibiotics in rRNA. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The Ribosome. Structure Function and Evolution. American Society for Microbiology, Washington, pp 479–490
Wool IG, Glück A, Endo Y (1992) Ribotoxin recognition of ribosomal RNA and a proposal for the mechanism of translocation. Trends Biochem Sci 17:266–269
Purohit P, Stern S (1994) Interaction of a small RNA with antibiotic and RNA ligands of the 30S subunit. Nature 370:659–662
Potapov AP, Triana-Alonso FJ, Nierhaus KH (1995) Ribosomal decoding processes at codons in the A or P sites depend differently on 2′OH groups. J Mol Biol 270:17680–17684
Howard B, Thom G, Jeffrey I, Colthurst D, Knowles D, Prescott C 1995 Fragmentation of the ribosome to investigate RNA-ligand interactions. Biochem Cell Biol (in press)
Szewczak AA, Moore PB, Chan Y-L, Wool IG (1993) The conformation of the sarcin/ricin loop from 28S ribosomal RNA. Proc Natl Acad Sci USA 90:9581–9585
Urlaub H, Kruft V, Bischof O, Müller E-C, Wittmann-Liebold B (1995) Protein-rRNA binding features and their structural and functional implications in ribosomes as determined by cross-linking studies. EMBO J 14:4578–4588
Bischof O, Kruft V, Wittmann-Liebold B (1994) Analysis of the puromycin binding site in the 70 S ribosome of Escherichia coli at the peptide level. J Biol Chem 269:18315–18319
Bischof O, Urlaub H, Kruft V, Wittmann-Liebold B (1995) Peptide environment of the peptidyl transferase center from Escherichia coli 70 S ribosomes as determined by thermoaffinity labeling with dihydrospiramycin. J Biol Chem 270:23060–23064
Geigenmüller U, Nierhaus KH (1986) Tetracycline can inhibit tRNA binding to the ribosomal P site as well as to the A site. Eur J Biochem 161:723–726
Moazed D, Noller HF (1987) Interaction of antibiotics with functional sites in 16S ribosomal RNA. Nature 327:389–394
Kurland CG, Jörgensen F, Richter A, Ehrenberg M, Bilgin N, Rojas AM (1990) Through the accuracy window. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The ribosome. Structure function and evolution. American Society for Microbiology, Washington, pp 513–526
Alksne LE, Anthony RA, Liebman SW, Warner JR (1993) An accuracy center in the ribosome conserved over 2 billion years. Proc Natl Acad Sci USA 90:9538–9541
Schreiner G, Nierhaus KH (1973) Proteins involved in the binding of dihydrostreptomycin to ribosomes of Escherichia coli. J Mol Biol 81:71–82
Abad JP, Amilis R (1994) Location of the streptomycin ribosomal binding site explains its pleiotropic effects on protein biosynthesis. J Mol Biol 235:1251–1260
Montadon PE, Wagner R, Stutz E (1986) E. coll ribosomes with a C912 to U base change in the 16S rRNA are sreptomycin resistant. EMBO J 5:3705–3708
Leclerc L, Melançon P, Brakier-Gingras L (1991) Mutations in the 915 region of Escherichia coli 16S ribosomal RNA reduce the binding of streptomycin to the ribosome. Nucleic Acids Res 19:3973–3977
Leclerc D, Melancon P, Brakier-Gingras L (1987) Crosslinking of streptomycin to the 16S ribosomal RNA of Escherichia coli. Biochemistry 26:6227–6232
Lodmell JS, Gutell RR, Dahlberg AE (1995) Genetic and comparative analyses reveal an alternative secondary structure in the region of nt 912 of Escherichia coli 16S rRNA. Proc Natl Acad Sci USA 92:10555–10559
Pinard R, Payant C, Melancon P, Brakier-Gingras L (1993) The 5′ proximal helix of 16S rRNA is involved in the binding of streptomycin to the ribosome. FASEB J 7:173–176
Allen PN, Noller HF (1991) A single base substitution in 16S ribosomal RNA suppresses streptomycin dependence and increases the frequency of translational Errors. Cell 66:141–148
Dahlberg AE, Lund E, Kjeldgaard NO, Bowman CM, Nomura M (1973) Colicin E3 induced cleavage of 16S rimosomal RNA; blocking effects of certain antibiotics. Biochemistry 12:948–950
Melançon P, Lemieux C, Brakier-Gingras L (1988) A mutation in the 530 loop of Escherichia coli 16S ribosomal RNA causes resistance to streptomycin. Nucleic Acids Res 16: 9631–9639
Powers T, Noller HF (1991) A functional pseudoknot in 16S ribosomal RNA. EMBO J 10:2203–2214
Brimacombe R (1992) Structure-function correlations (and discrepancies) in the 16S ribosomal RNA from Escherichia coli. Biochimie 74:319–326
Stern S, Powers T, Changchien LM, Noller HF (1989) RNA protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA. Science 244:783–790
Powers T, Noller HF (1995) Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA. RNA 1:194–209
Beauclerk AAD, Cundliffe E (1987) Sites of action of two ribosomal RNA methylases responsible for resistance to aminoglycosides. J Mol Biol 193:661–671
Spangler EA, Blackburn EH (1985) The nucleotide sequence of the 17S ribosomal RNA gene of Tetrahymena rhermophilia and the identification of point mutations resulting in resistance to the antibiotics paromomycin and hygromycin. J Biol Chem 260:6334–6340
De Stasio EA, Moazed D, Noller HF, Dahlberg AE (1989) Mutations in 16S ribosomal RNA disrupt antibiotic-RNA interaction. EMBO J 8:1213–1216
De Stasio EA, Dahlberg AE (1990) Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16S ribosomal RNA. J Mol Biol 212:127–133
O'Connor M, De Stasio EA, Dahlberg AE (1991) Interaction between 16S ribosomal RNA and ribosomal protein S12: differential effects of paromomycin and streptomycin. Biochimie 73:1493–1500
Allen PN, Noller HF (1989) Mutations in ribosomal proteins S4 and S12 influence the higher-order structure of 16S ribosomal RNA. J Mol Biol 208:457–468
Lando D, Cousin AM, Ojasoo T, Raynaud JP (1976) Paromomycin and dihydrostreptomycin bind to Escherichia coli ribosomes. Eur J Biochem 66:597–606
Misumi M, Nishimura T, Komai T, Tanaka N (1978) Interaction of kanamycin and related antibiotics with the large subunit of ribosomes and the inhibition of translocation. Biochem Biophys Res Commun 84:358–365
Wurmbach P, Nierhaus KH (1983) The inhibition pattern of antibiotics on the extent and accuracy of tRNA binding to the ribosome and their effect on the subsequent steps in chain elongation. Eur J Biochem 130:9–12
Wool IG, Endo Y, Chan Y-L, Glück A (1990) Structure, Function, and Evolution of Mammalian Ribosomes. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The ribosome. structure function and evolution. American Society for Microbiology, Washington, pp 203–214
Hausner TP, Atmadja J, Nierhaus KH (1987) Evidence that the G2661 region of the 23S rRNA is located at the ribosomal binding sites of both elongation factors. Biochimie 69:911–923
Moazed D, Robertson JM, Noller HF (1988) Interaction of elongation factors EF-G and EF-Tu with a conserved loop in 23S rRNA. Nature 334:362–364
Parmeggiani A, Swart GWM (1985) Mechanism of action of kirromycin-like antibiotics. Annu Rev Microbiol 39:557–577
Berchtold H, Reshetnikova L, Reiser COA, Schirmer NK, Sprinzl M, Hilgenfeld R (1993) Crystal structure of active elongation factor Tu reveals major domain rearrangements. Nature 365:126–132
Kjeldgaard M, Nissen P, Thirup S, Nyborg J (1993) The crystal structure of elongation factor EF-Tu from Thermus aquaticus in the GTP conformation. Structure 1:35–50
Mesters JR, Zeef LAH, Hilgenfeld R, de Graaf JM, Kraal B, Bosch L (1994) The structural and functional basis for the kirromycin resistance of mutant EF-Tu species in Escherichia coli. EMBO J 13:4877–4885
Van Noort JM, Kraal B, Bosch L, la Cour TFM, Nyborg J, Clark BFC (1984) Cross-linking of tRNA at two different sites of the elongation factor Tu. Proc Natl Acad Sci USA 81:3969–3972
Alexander C, Bilgin N, Lindschau C, Mesters JR, Kraal B, Hilgenfeld R, Erdmann VA, Lippmann C (1995) Phosphorylation of elongation facroe Tu prevents ternary complex formation. J Biol Chem 270:14541–14547
Rodnina MV, Fricke R, Kuhn L, Wintermeyer W (1995) Co-don-dependent conformational change of elongation factor Tu preceding GTP hydrolysis on the ribosome. EMBO J 14:2613–2619
Tubulekas I, Buckingham RH, Hughes D (1991) Mutant ribosomes can generate dominant kirromycin resistance. J Bacteriol 173:3635–3643
Wolf H, Assmann D, Fischer E (1978) Pulvomycin, an inhibitor of protein biosynthesis preventing ternary complex formation between elongation factor Tu, GTP, and aminoacyl-tRNA. Proc Natl Acad Sci USA 75:5324–5328
Zeef LAH, Bosch L, Anbrgh PH, Cetin R, Parmeggiani A, Hilgenfeld R (1994) Pulvomycin-resistant mutants of E. coli elongation factor Tu. EMBO J 13:5113–5120
Anborgh PH, Parmeggiani A (1991) New antibiotic that acts specifically on the GTP-bound form of elongation factor Tu. EMBO J 10:779–784
Schulze H, Nierhaus KH (1982) Minimal set of ribosomal components for reconstitution of the peptidyltransferase activity. EMBO J 1:609–613
Franceschi FJ, Nierhaus KH (1990) Ribosomal proteins L15 and L16 are mere late assembly proteins of the large ribosomal subunit. J Biol Chem 265:16676–16682
Noller HF, Hoffarth V, Zimniak L (1992) Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256:1416–1419
Noller HF (1993) Peptidyl transferase: protein, ribonucleoprotein, or RNA? J Bacteriol 175:5297–5300
Cooperman BS, Weitzman CJ, Fernández CL (1990) Antibiotic probes of Escherichia coli ribosomal peptidyltransferase. In: Hill WE, Dahlberg A, Garrett RA, Moore PM, Schlessinger D, Warner JR (eds) The ribosome. structure function and evolution. American Society for Microbiology, Washington, pp 479–490
Samaha RR, Green R, Noller HF (1995) A base pair between tRNA and 23S rRNA in the peptidyl transferase centre of the ribosome. Nature 377:309–314
Rodriguez-Fonseca C, Amilis R, Garrett RA (1995) Fine structure of the peptidyl transferase centre on 23 S-like rRNAs deduced from chemical probing of antibiotic ribosome complexes. J Mol Biol 247:224–235
Vester B, Garrett RA (1988) The importance of highly conserved nucleotides in the binding region of chloramphenicol at the peptidyl transfer centre of Escherichia coli 23S ribosomal RNA. EMBO J 7:3577–3587
Rheinberger HJ, Nierhaus KH (1990) Partial release of AcPhe-Phe-tRNA from ribosomes during poly(U)-dependent poly(Phe) synthesis and the effects of chloramphenicol. Eur J Biochem 193:643–650
Menninger JR, Otto DP (1982) Erythromycin, carbomycin, and spiramycin inhibit protein synthesis by stimulating the dissociation of peptidyl-tRNA from ribosomes. Antimicrob Agents Chemother 21:810–818.
Moazed D, Noller HF (1987) Chloramphenicol, erythromycin, carbomycin and vernamycin B protect overlapping sites in the peptidyl transferase region of 23S ribosomal RNA. Biochimie 69:879–884
Saarma U, Remme J (1992) Novel mutants of 23S RNA: characterization of functional properties. Nucleic Acids Res 20:3147–3152
Douthwaite S (1992) Functional Interactions within 23S rRNA Involving the Peptidyltransferase Center. J Bacteriol 174:1333–1338
Nierhaus D, Nierhaus KH (1973) Identification of the chloramphenicol-binding protein in Escherichia coli ribosomes by partial reconstitution. Proc Natl Acad Sci USA 70:2224–2228
Dinos G, Synetos D, Coutsogeorgopoulos C (1993) Interaction between the antibiotic spiramycin and a ribosomal complex active in peptide bond formation. Biochemistry 32:10638–10647
Menninger JR, Coleman RA (1993) Lincosamide antibiotics stimulate dissociation of peptidyl-tRNA from ribosomes. Antimicrob Agents Chemother 37:2027–2029
Arevalo MA, Tejedor F, Polo F, Ballesta JP (1988) Protein components of the erythromycin binding site in bacterial ribosomes. J Biol Chem 263:58–63
Douthwaite S (1992) Interaction of the antibiotics clindamycin and lincomycin with Escherichia coli 23S ribosomal RNA. Nucleic Acids Res 20:4717–4720
Douthwaite S, Aagaard C (1993) Erythromycin binding is reduced in ribosomes with conformational alterations in the 23 S rRNA peptidyl transferase Loop. J Mol Biol 232:725–731
Teraoka H, Nierhaus KH (1978) Proteins from Escherichia coli ribosomes involved in binding of erythromycin. J Mol Biol 126:185–193
Lotti M, Dabbs ER, Hasenbank R, Stöffler-Meilike M, Stöffler G (1983) Characterisation of a mutant from Escherichia coli lacking protein L15 and localisation of protein L15 by immuno-electron microscopy. Mol Gen Genet 192:295–300
Chittum HS, Champney WS (1994) Ribosomal protein gene sequence changes in erythromycin-resistant mutants of Escherichia coli. J Bacteriol 176:6192–6198
Tejedor F, Ballesta JPG (1986) Reaction of some macrolide antibiotics with the ribosome. Labeling of the binding site components. Biochemistry 25:7725–7731
de Bethune M-P, Nierhaus KH (1978) Characterisation of the binding of Virginiamycin S to Escherichia coli ribosomes. Eur J Biochem 86:187–191
Di Giambattista M, Nyssen E, Pecher A, Cocito C (1990) Affinity labeling of the virginiamycin S binding site on bacterial ribosome. Biochemistry 9:9203–9211
Vannuffel P, Di Giambattista M, Cocito C (1994) Chemical probing of a virginiamycin M-promoted conformational change of the peptidyl-transferase domain. Nucleic Acids Res 22:4449–4453
Vannuffel P, Di Giambattista M, Cocito C (1992) The role of rRNA bases in the interaction of peptidyltransferase inhibitors with bacterial ribosomes. J Biol Chem 267:16114–16120
Sköld SE (1983) Chemical crosslinking of elongation factor G to the 23S rRNA in 70S ribosomes from Escherichia coli. Nucleic Acids Res 11:4923–4932
Miller SP, Bodley JW (1991) α-Sarcin cleavage of ribosomal RNA is inhibited by the binding of elongation factor G or thiostrepton to the ribosome. Nucleic Acids Res 19:1657–1660
Mankin AS, Leviev I, Garrett RA (1994) Cross-hypersensitivity effects of mutations in 23 S rRNA yield insight into aminoacyl-tRNA binding. J Mol Biol 244:151–157
Egebjerg J, Douthwaite S, Garrett RA (1989) Antibiotic interactions at the GTPase-associated centre within Escherichia coli 23S rRNA. EMBO J 8:607–611
Egebjerg J, Douthwaite S, Liljas A, Garrett RA (1990) Characterization of the binding sites of protein L11 and the L10.(L12)4 pentameric complex in the GTPase domain of 23 S ribosomal RNA from Escherichia coli. J Mol Biol 213:275–288
Ryan PC, Lu M, Draper DE (1991) Recognition of the highly conserved GTPase center of 23 S ribosomal RNA by ribosomal protein L11 and the antibiotic thiostrepton. J Mol Biol 221:1257–1268
Rosendahl G, Douthwait S (1993) Ribosomal Proteins III and L10.(L12)4 and the antibiotic thiostrepton interact with overlapping regions of the 23 S rRNA backbone in the ribosomal GTPase centre. J Mol Biol 234:1013–1020
Thompson J, Cundliffe E, Dahlberg AE (1988) Site-directed mutagenesis of Escherichia coli 23 S ribosomal RNA at position 1067 within the GTP hydrolysis centre. J Mol Biol 203:457–465
Rosendahl G, Douthwaite S (1994) The antibiotics micrococcin and thiostrepton interact directely with 23S rRNA nucleotides 1067A and 1095A. Nucleic Acids Res 22:357–363
Thompson J, Musters W, Cundliffe E, Dahlberg AE (1993) Replacement of the L11 binding region within E. coli 23S ribosomal RNA with ist homologue from yeast: in vivo and in vitro analysis of hybrid ribosomes altered in the GTPase centre. EMBO J 12:1499–1504
Uchiumi T, Wada A, Kominami R (1995) A base substitution within the GTPase-associated domain of mammalian 28 S ribosomal RN A causes high thiostrepton accessibility. J Biol Chem 270:29889–29893
Thompson J, Cundliffe E (1991) The binding of thiostrepton to 23S ribosomal RNA. Biochimie 73:1131–1135
Ryan PC, Draper DE (1991) Detection of a tertiary interaction in the highly conserved GTPase center of large subunit ribosomal RNA. Proc Natl Acad Sci USA 88:6308–6312
Cundliffe E (1986) Involvement of specific portions of ribosomal RNA in defined ribosoamal functions: a study utilizing antibiotics. In: Hardesty B, Kramer G (eds) Structure, function, and genetics of ribosomes. Springer, Berlin Heidelberg New York, pp 586–604
Draper DE, Xing Y, Laing LG (1995) Thermodynamics of RNA unfolding: stabilization of a ribosomal RNA tertiary structure by thiostrepton and ammonium Ion. J Mol Biol 249:231–238
Kutay UR, Spahn CMT, Nierhaus KH (1990) Similarities and differences in the inhibition patterns of thiostrepton and viomycin: evidence for two functionally different populations of P sites when occupied with AcPhe-tRNA. Biochim Biophys Acta 1050:193–196
Yamada T, Mizugichi Y, Nierhaus KH, Wittmann HG (1978) Resistance to viomycin conferred by RNA of either ribosomal subunit. Nature 275:460–461
Powers T, Noller HF (1994) Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in Protein S12. J Mol Biol 235:156–172
Yamada T, Nierhaus KH (1978) Viomycin favours the formation of 70S ribosome couples. Mol Gen Genet 161:261–265
Bilgin N, Richter AA, Ehrenberg, M, Dahlberg AE, Kurland CG (1990) Ribosomal RNA and protein mutants resistant to spectinomycin. EMBO J 9:735–739
Piepersberg W, Bock A, Yaguchi M, Wittmann HG (1975) Genetic position and amino acid replacements of several mutations in ribosomal protein S5 from Escherichia coli. Mol Gen Genet 143:43–52
Sigmund C, Ettayebi M, Morgan E (1984) Antibiotic resistance mutations in 16S and 23S ribosomal RNA genes of Escherichia coli. N ucleic Acids Res 12:4653–4663
Makosky PC, Dahlberg AE (1987) Spectinomycin resistance at site 1192 in 16S ribosomal RNA of E. coli: an analysis of three mutants. Biochimie 69:885–889
Brink MF, Brink G, Verbeet MP, de Boer HA (1994) Spectinomycin interacts specifically with the residues G1064 and C1192 in 16S rRNA, thereby potentially freezing this molecule into an inactive conformation. Nucleic Acids Res 22:325–331
Johanson U, Hughes D (1995) A new mutation in 16S rRNA of Escherichia coli conferring spectinomycin resistance. Nucleic Acids Res 23:464–466
Samaha RR, O'Brien B, O'Brien TW, Noller HF (1994) Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16S rRNA. Proc Natl Acad Sci USA 91:7884–7888
Ramakrishnan V, White SW (1992) The structure of ribosomal protein S5 reveals sites of interaction with 16S rRNA. Nature 358:768–771
Prescott CD, Kornau HC (1992) Mutations in E. coli 16S rRNA that enhance and decrease the activity of a suppressor tRNA. Nucleic Acids Res 20:1567–1571
Moine H, Dahlberg AE (1994) Mutations in helix 34 of Escherichia coli 16S ribosomal RNA have multiple effects on ribosome function and synthesis. J Mol Biol 243:402–412
Willie GR, Richman N, Godfredsen WO, Bodley JW (1975) Some characteristics of and structural requirements for the interaction of 24, 25-dihydrofusidic acid with ribosome elongation factor G complexes. Biochemistry 14:1713–1718
Johanson U, Hughes D (1994) Fusidic acid-resistant mutations define three regions in elongation factor G of Salmonella typhimurium. Gene 143:55–59
von Ahsen U, Davies J, Schroeder R (1993) Antibiotic inhibition of group I ribozyme function. Nature 1993:368–370
Stage TK, Hertel KJ, Uhlenbeck OC (1995) Inhibition of the hammerhead ribozyme by neomycin. RNA 1:95–101
Zapp ML, Stern S, Green MR (1993) Small molecules that selectively block RNA binding of HIV-I Rev protein inhibit Rev function and viral production. Cell 74:969–978
Author information
Authors and Affiliations
Rights and permissions
About this article
Cite this article
Spahn, C.M.T., Prescott, C.D. Throwing a spanner in the works: antibiotics and the translation apparatus. J Mol Med 74, 423–439 (1996). https://doi.org/10.1007/BF00217518
Received:
Accepted:
Issue Date:
DOI: https://doi.org/10.1007/BF00217518