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Molecular cloning and sequencing of a cDNA for an auxin-repressed mRNA: correlation between fruit growth and repression of the auxin-regulated gene

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Abstract

A complementary DNA (cDNA) library has been constructed in λgt10 from poly(A)+ mRNA isolated from auxin-deprived strawberry receptacles. By differential plaque filter hybridization, a cDNA (λSAR5) to an auxin-repressed mRNA has been isolated. The expression of the auxin-repressed gene is studied at various stages of normal fruit development and in fruits of variant strawberry genotype using λSAR5 as a probe. Northern analyses of RNA isolated from pollinated and unpollinated fruits of various developmental stages revealed that mRNA corresponding to the λSAR5 clone is repressed during normal fruit development, and the level of λSAR5 mRNA is regulated by endogenous auxin. Furthermore, results with both normal and variant genotype strawberry fruit indicate that there is a positive correlation between growth of strawberry fruit and repression of mRNA corresponding to the λSAR5 clone. The λSAR5 cDNA has been sequenced and is 723 nucleotides in length. The deduced protein has 111 amino acid residues with a molecular mass of 12.5 kDa. The putative polypeptide starts at nucleotide position 20 and ends at 352. The molecular weight of the predicted polypeptide is in agreement with the molecular weight of the in vitro translated polypeptide of hybrid selected mRNA. A comparison of the nucleotide and deduced amino acid sequence of λSAR5 with nucleotide and protein sequences in data banks has not revealed any homology to known proteins.

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References

  1. Ainley WM, Walker JC, Nagao RT, Key JL: Sequence and characterization of two auxin-regulated genes from soybean. J Biol Chem 263: 10658–10666 (1988).

    PubMed  Google Scholar 

  2. Archbold DD, DennisJr FG: Strawberry receptacle growth and endogenous IAA content as affected by growth regulator application and achene removal. J Am Soc Hort Sci 110: 816–820 (1985).

    Google Scholar 

  3. Baulcombe DC, Key JL: Polyadenylated RNA sequences which are reduced in concentration following auxin treatment of soybean hypocotyls. J Biol Chem 255: 8907–8913 (1980).

    Google Scholar 

  4. Benton D, Davis RW: Screening λgt recombinant clones by hybridization to single plaques in situ. Science 196: 179–183 (1977).

    Google Scholar 

  5. Brumbaugh JA, Middendorf LR, Grone DL, Ruth JL: Continuous, on-line DNA sequencing using oligodeoxyribonucleotide primers with multiple fluorophores. Proc Natl Acad Sci USA 85: 1–5 (1988).

    PubMed  Google Scholar 

  6. Dreher TW, Poovaiah BW: Changes in auxin content during development in strawberry fruits. J Plant Growth Regul 1: 267–276 (1982).

    Google Scholar 

  7. Feinberg A, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 132: 6–13 (1983).

    PubMed  Google Scholar 

  8. Feinberg A, Vogelstein B: A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 137: 266–267 (1984).

    PubMed  Google Scholar 

  9. Given NK, Venis MA, Grierson D: Hormonal regulation of ripening in the strawberry, a non-climacteric fruit. Planta 174: 402–406 (1988).

    Google Scholar 

  10. Gubler U, Hoffman BJ: A simple and very efficient method for generating cDNA libraries. Gene 25: 263–269 (1983).

    Article  PubMed  Google Scholar 

  11. Guilfoyle TJ: Auxin-regulated gene expression in higher plants. CRC Crit Rev Plant Sci 4: 247–276 (1986).

    Google Scholar 

  12. Hagen G, Guilfoyle TJ: Rapid induction of selective transcription by auxins. Mol Cell Biol 5: 1197–1203 (1985).

    PubMed  Google Scholar 

  13. Hong JC, Nagao RT, Key JL: Characterization and sequence analysis of a developmentally regulated putative cell wall protein gene isolated from soybean. J Biol Chem 262: 8367–8376 (1987).

    PubMed  Google Scholar 

  14. Huynh T, Young RA, Davis RW: Constructing and screening cDNA libraries in λgt10 and λgt11. In: Glover DM (ed) DNA Cloning Techniques: A Practical Approach, pp. 49–78. IRL Press, London (1985).

    Google Scholar 

  15. Hyldig-Nielsen JJ, Jensen EO, Paludan K, Wiborg O, Garret R, Jorgensen P, Marcker KA. The primary sequence of two leghemoglobin genes from soybean. Nucleic Acids Res 10: 689–701 (1982).

    PubMed  Google Scholar 

  16. Jena PK, Reddy ASN, Poovaiah BW: Molecular cloning and sequencing of a cDNA for plant calmodulin: signalinduced changes in the expression of calmodulin. Proc Natl Acad Sci USA 86: 3644–3648 (1989).

    PubMed  Google Scholar 

  17. Joshi CP: An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucleic Acids Res 15: 6643–6653 (1987).

    PubMed  Google Scholar 

  18. Joshi CP: Putative polyadenylation signals in nuclear genes of higher plants: a compilation and analysis. Nucleic Acids Res 15: 9627–9640 (1987).

    PubMed  Google Scholar 

  19. Kozak M: Compilation and analysis of sequences upstream from the translation start site in eukaryotic mRNAs. Nucleic Acids Res 12: 857–872 (1984).

    PubMed  Google Scholar 

  20. Kyte J, Doolittle RF: A simple method for displaying the hydropathic character of a protein. J Mol Biol 157: 105–132 (1982).

    PubMed  Google Scholar 

  21. Maniatis T, Fritsch EF, Sambrook J: Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY (1982).

    Google Scholar 

  22. McClure BA, Guilfoyle T: Characterization of a class of small auxin-inducible soybean polyadenylated RNAs. Plant Mol Biol 9: 611–623 (1987).

    Google Scholar 

  23. Mcclure BA, Hagen G, Brown CS, Gee MA, Guilfoyle T: Transcription, organization, and sequence of an auxin-regulated gene cluster in soybean. Plant Cell 1: 229–239 (1989).

    Article  PubMed  Google Scholar 

  24. Mudge KW, Narayanan KR, Poovaiah BW: Control of strawberry fruit set and development with auxins. J Am Soc Hort Sci 106: 80–84 (1981).

    Google Scholar 

  25. Murray MG, Thompson WF: Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res 8: 4321–4325 (1980).

    PubMed  Google Scholar 

  26. Nitsch JP: Growth and morphogenesis of the strawberry as related to auxin. Am J Bot 37: 211–215 (1950).

    Google Scholar 

  27. Nitsch JP: Free auxin and free tryptophan in the strawberry. Plant Physiol 30: 33–39 (1955).

    Google Scholar 

  28. Ray PM: Principles of plant cell expansion. In: Cosgrove DJ, Knievel DP (eds) Physiology of Cell Expansion During Plant Growth, pp. 1–17. American Society of Plant Physiologists, Rockville, MD (1987).

    Google Scholar 

  29. Reddy ASN, Poovaiah BW: Accumulation of a glycine rich protein in auxin-deprived strawberry fruits. Biochem Biophys Res Commun 147: 885–891 (1987).

    PubMed  Google Scholar 

  30. Reddy ASN, Poovaiah BW: Auxin-regulated changes in polypeptides in developing strawberry fruit. Proc Int Conf Plant Physiol (in press).

  31. Sanger F, Nicklen S, Coulson AR: DNA sequencing with chain terminating inhibitors. Proc Natl Acad Sci USA 74: 5463–5467 (1977).

    PubMed  Google Scholar 

  32. Southwick SM, Poovaiah BW: Auxin movement in strawberry fruit corresponds to its growth-promoting activity. J Am Soc Hort Sci 112: 139–142 (1987).

    Google Scholar 

  33. Theologis A: Rapid gene regulation by auxin. Annu Rev Plant Physiol 37: 407–438 (1986).

    Article  Google Scholar 

  34. Theologis A, Huynh TV, Davis RW: Rapid induction of specific mRNAs by auxin in pea epicotyl tissue. J Mol Biol 183: 53–68 (1985).

    PubMed  Google Scholar 

  35. van derZaal EJ, Memelink J, Mennes AM, Quint A, Libbenga KR: Auxin-induced mRNA species in tobacco cell cultures. Plant Mol Biol 10: 145–157 (1987).

    Google Scholar 

  36. Veluthambi K, Poovaiah BW: Auxin-regulated polypeptide changes at different stages of strawberry fruit development. Plant Physiol 75: 349–353 (1984).

    Google Scholar 

  37. Veluthambi K, Rhee JK, Mizrahi Y, Poovaiah BW: Correlation between lack of receptacle growth in response to auxin and accumulation of a specific polypeptide in a strawberry (fragaria ananassa Duch.) variant genotype. Plant Cell Physiol 26: 317–324 (1985).

    Google Scholar 

  38. Walker JC, Key JL: Isolation of cloned cDNAs to auxinresponsive poly(A)+ RNAs of elongating soybean hypocotyl. Proc Natl Acad Sci USA 79: 7185–7189 (1982).

    Google Scholar 

  39. Watson CJ, Jackson JF: An alternative procedure for the synthesis of double-stranded cDNA for cloning in phage and plasmid vectors. In: Glover DM (ed) DNA Cloning: A Practical Approach, Vol. 1, pp. 79–88. IRL Press, Oxford (1985).

    Google Scholar 

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Reddy, A.S.N., Poovaiah, B.W. Molecular cloning and sequencing of a cDNA for an auxin-repressed mRNA: correlation between fruit growth and repression of the auxin-regulated gene. Plant Mol Biol 14, 127–136 (1990). https://doi.org/10.1007/BF00018554

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