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Bean yellow mosaic virus subgroup; search for the group specific sequences in the 3′ terminal region of the genome

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Potyvirus Taxonomy

Part of the book series: Archives of Virology ((ARCHIVES SUPPL,volume 5))

Summary

In order to examine relationships among viruses of the bean yellow mosaic subgroup of the Potyvirus genus, several isolates of bean yellow mosaic virus (BYMV) and clover yellow vein virus (C1YVV) were compared by amino acid sequence of the coat protein and nucleotide sequence of the 3′ terminal non-coding region. The sequence comparisons showed that BYMV and C1YVV were distinct viruses but had close affinity to each other (85–95% homology among isolates of a virus but 70-77% homology between viruses), justifying establishment of the BYMV subgroup. There was an oligonucleotide consensus sequence present in the 3′ terminal non-coding region of all potyviruses examined. This consensus sequence divided the potyviruses into three groups whose significance is not clear.

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References

  1. Allison RF, Sorenson JC, Kelly ME, Armstrong FB, Dougherty WG (1985) Sequence determination of the capsid protein gene and flanking regions of tobacco etch virus: evidence for synthesis and processing of a polyprotein in potyvirus genome expression. Proc Natl Acad Sei USA 82: 3969–3972.

    Article  CAS  Google Scholar 

  2. Atreya CD, Raccah B, Pirone TP (1990) A point mutation in the coat protein abolishes aphid transmissibility of a potyvirus. Virology 178: 161–165.

    Article  PubMed  CAS  Google Scholar 

  3. Barnett OW, Randies JW, Burrows PM (1987) Relationships among Australian and North American isolates of the bean yellow mosaic potyvirus subgroup. Phytopathology 77:791–799.

    Article  Google Scholar 

  4. Bos L, Kowalska CZ, Maat DZ (1974) The identification of bean mosaic, pea yellow mosaic and pea necrosis strains of bean yellow mosaic virus. Neth J Plant Pathol 80: 173–191.

    Article  Google Scholar 

  5. Boye K, Jensen PE, Stummann BM, Henningsen KW (1990) Nucleotide sequence of cDNA encoding the BYMV coat protein gene. Nucleic Acids Res 18: 4926.

    Article  PubMed  CAS  Google Scholar 

  6. Bryan GT, Gardner RC, Forster RLS (1992) Nucleotide sequence of the coat protein gene of a strain of clover yellow vein virus from New Zealand: conservation of a stemloop structure in the 3’region of potyviruses. Arch Virol 124: 133–146.

    Article  PubMed  CAS  Google Scholar 

  7. Domier LL, Franklin KM, Shahabuddin M, Hellmann GM, Overmeyer JH, Siaw MFE, Lomonossoff GP, Shaw JG, Rhoads RE (1986) The nucleotide sequence of tobacco vein mottling virus RNA. Nucleic Acids Res 14: 5417–5430.

    Article  PubMed  CAS  Google Scholar 

  8. Eggenberger AL, Stark DM, Beachy RN (1989) The nucleotide sequence of a soybean mosaic virus coat protein-coding region and its expression in Escherichia coli, Agrobacterium tumefaciens, and tobacco callus. J Gen Virol 70: 1853–1860.

    Article  PubMed  CAS  Google Scholar 

  9. Frenkel MJ, Jilka JM, McKern NM, Strike PM, Clark Jr JM, Shukla DD, Ward CW (1991) Unexpected sequence diversity in the amino-terminal ends of the coat proteins of strains of sugarcane mosaic virus. J Gen Virol 72: 237–242.

    Article  PubMed  CAS  Google Scholar 

  10. Gough KH, Azad AA, Hanna PJ, Shukla DD (1987) Nucleotide sequence of the capsid and nuclear inclusion protein genes from the Johnson grass strain of sugarcane mosaic virus RNA. J Gen Virol 68: 297–304.

    Article  CAS  Google Scholar 

  11. Hammond J, Hammond RW (1989) Molecular cloning, sequencing and expression in Escherichia coli of the bean yellow mosaic virus coat protein gene. J Gen Virol 70: 1961–1974.

    Article  PubMed  CAS  Google Scholar 

  12. Harrison BD, Robinson DJ (1988) Molecular variation in vector-borne plant viruses: epidemiological significance. Philos Trans R Soc Lond [Biol] 321:447-462 (Virology & AIDS Abstracts 22: 121, 1989)

    Article  CAS  Google Scholar 

  13. Jones RT, Diachun S (1977) Serologically and biologically distinct bean yellow mosaic virus strains. Phytopathology 67: 831–838.

    Article  Google Scholar 

  14. Jordan R, Hammond J (1991) Comparison and differentiation of potyvirus isolates and identification of strain-, virus-, subgroup-specific and potyvirus group-common epitopes using monoclonal antibodies. J Gen Virol 72: 25–36.

    Article  PubMed  Google Scholar 

  15. Lain S, Riechmann JL, Mendez E, Garcia JA (1988) Nucleotide sequence of the 3’ terminal region of plum pox potyvirus RNA. Virus Res 10: 325–342.

    Article  CAS  Google Scholar 

  16. Ohshima K, Hataya T, Sano T, Inoue AK, Shikata E (1991) Comparison of amino acid sequences, biological properties and serological characteristics between potato virus Y ordinary strain and necrotic strain. Ann Phytopathol Soc Jpn 57: 615–622.

    Article  CAS  Google Scholar 

  17. Quemada H, L’Hostis B, Gonsalves D, Reardon IM, Heinrikson R, Hiebert EL, Sieu LC, Slightom JL (1990) The nucleotide sequence of the 3-terminal regions of papaya ringspot virus strains W and P. J Gen Virol 71: 203–210.

    Article  PubMed  CAS  Google Scholar 

  18. Quemada H, Sieu LC, Siemieniak DR, Gonsalves D, Slightom JL (1990) Watermelon mosaic virus II and zucchini yellow mosaic virus: cloning of 3’-terminal regions, nucleotide sequences, and phylogenetic comparisons. J Gen Virol 71: 1451–1460.

    Article  PubMed  CAS  Google Scholar 

  19. Randies JW, Davies C, Gibbs AJ, Hatta T (1980) Amino acid composition of capsid protein as a taxonomie criterion for classifying the atypical S strain of bean yellow mosaic virus. Aust J Biol Sei 33: 245–254.

    Google Scholar 

  20. Reddick BB, Barnett OW (1983) A comparison of three potyviruses by direct hybridization analysis. Phytopathology 73: 1506–1510.

    Article  CAS  Google Scholar 

  21. Shukla DD, Ward CW (1988) Amino acid sequence homology of coat proteins as a basis for identification and classification of the potyvirus group. J Gen Virol 69: 2703–2710.

    Article  CAS  Google Scholar 

  22. Shukla DD, McKern NM, Ward CW (1988) Coat protein of potyviruses 5. Symptomatology, serology, and coat protein sequences of three strains of passionfruit woodiness virus. Arch Virol 102: 221–232.

    Article  PubMed  CAS  Google Scholar 

  23. Shukla DD, Ward CW (1989) Structure of potyvirus coat proteins and its application in the taxonomy of the potyvirus group. Adv Virus Res 36: 272–314.

    Google Scholar 

  24. Shukla DD, Frenkel MJ, Ward CW (1991) Structure and function of the potyvirus genome with special reference to the coat protein coding region. Can J Plant Pathol 13: 178–191.

    Article  CAS  Google Scholar 

  25. Takahashi T (1990) Studies on gene structure of bean yellow mosaic virus and clover yellow vein virus. PhD thesis, Hokkaido University, Sapporo.

    Google Scholar 

  26. Takahashi T, Uyeda I, Ohshima K, Shikata E (1990) Nucleotide sequence of the capsid protein gene of bean yellow mosaic virus chlorotic spot strain. J Fac Agric Hokkaido Univ 64: 152–163.

    Google Scholar 

  27. Tracy SL, Frenkel MJ, Gough KH, Hanna PJ, Shukla DD (1992) Bean yellow mosaic, clover yellow vein and pea mosaic are distinct potyviruses: evidence from coat protein gene sequence and molecular hybridization involving the 3’ non-coding regions. Arch Virol 122: 249–261.

    Article  PubMed  CAS  Google Scholar 

  28. Tremblay M-F, Nicolas O, Sinha RC, Lazure C, Laliberte J-F (1990) Sequence of the 3’-terminal region of turnip mosaic virus RNA and the capsid protein gene. J Gen Virol 71:2769–2772.

    Article  PubMed  CAS  Google Scholar 

  29. Uyeda I, Takahashi T, Shikata E (1991) Relatedness of the nucleotide sequence of the 3 ’-terminal region of clover yellow vein potyvirus RNA to bean yellow mosaic virus potyvirus RNA. Intervirology 32: 234–245.

    PubMed  CAS  Google Scholar 

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Author information

Authors and Affiliations

  1. Department of Botany, Faculty of Agriculture, Hokkaido University, Sapporo, Japan

    I. Uyeda

  2. Department of Botany, Faculty of Agriculture, Hokkaido University, Sapporo, 060, Japan

    I. Uyeda

Authors
  1. I. Uyeda
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Editor information

Editors and Affiliations

  1. Department of Plant Pathology and Physiology, Clemson University, Clemson, South Carolina, USA

    Ortus W. Barnett Jr.

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© 1992 Springer-Verlag

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Uyeda, I. (1992). Bean yellow mosaic virus subgroup; search for the group specific sequences in the 3′ terminal region of the genome. In: Barnett, O.W. (eds) Potyvirus Taxonomy. Archives of Virology, vol 5. Springer, Vienna. https://doi.org/10.1007/978-3-7091-6920-9_40

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  • DOI: https://doi.org/10.1007/978-3-7091-6920-9_40

  • Publisher Name: Springer, Vienna

  • Print ISBN: 978-3-211-82353-8

  • Online ISBN: 978-3-7091-6920-9

  • eBook Packages: Springer Book Archive

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