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Joint Fractional Segmentation and Multi-tensor Estimation in Diffusion MRI

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Information Processing in Medical Imaging (IPMI 2013)

Part of the book series: Lecture Notes in Computer Science ((LNIP,volume 7917))

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Abstract

In this paper we present a novel Bayesian approach for fractional segmentation of white matter tracts and simultaneous estimation of a multi-tensor diffusion model. Our model consists of several white matter tracts, each with a corresponding weight and tensor compartment in each voxel. By incorporating a prior that assumes the tensor fields inside each tract are spatially correlated, we are able to reliably estimate multiple tensor compartments in fiber crossing regions, even with low angular diffusion-weighted imaging (DWI). Our model distinguishes the diffusion compartment associated with each tract, which reduces the effects of partial voluming and achieves more reliable statistics of diffusion measurements. We test our method on synthetic data with known ground truth and show that we can recover the correct volume fractions and tensor compartments. We also demonstrate that the proposed method results in improved segmentation and diffusion measurement statistics on real data in the presence of crossing tracts and partial voluming.

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References

  1. Alexander, A.L., Hasan, K.M., Lazar, M., Tsuruda, J.S., Parker, D.L.: Analysis of partial volume effects in diffusion-tensor MRI. MRM 45(5), 770–780 (2001)

    Article  Google Scholar 

  2. Assemlal, H.-E., Tschumperl, D., Brun, L., Siddiqi, K.: Recent advances in diffusion MRI modeling: Angular and radial reconstruction. MedIA 15(4), 369–396 (2011)

    Google Scholar 

  3. Behrens, T.E.J., Woolrich, M.W., Jenkinson, M., Johansen-Berg, H., Nunes, R.G., Clare, S., Matthews, P.M., Brady, J.M., Smith, S.M.: Characterization and propagation of uncertainty in diffusion-weighted MR imaging. MRM 50, 1077–1088 (2003)

    Article  Google Scholar 

  4. Cook, P.A., Bai, Y., Gilani, N.S., Seunarine, K.K., Hall, M.G., Parker, G.J., Alexander, D.C.: Camino: Open-source diffusion-MRI reconstruction and processing. In: ISMRM, p. 2759 (May 2006)

    Google Scholar 

  5. Fletcher, P.T., Tao, R., Jeong, W.-K., Whitaker, R.T.: A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI. In: Karssemeijer, N., Lelieveldt, B. (eds.) IPMI 2007. LNCS, vol. 4584, pp. 346–358. Springer, Heidelberg (2007)

    Chapter  Google Scholar 

  6. Hao, X., Whitaker, R.T., Fletcher, P.T.: Adaptive riemannian metrics for improved geodesic tracking of white matter. In: Székely, G., Hahn, H.K. (eds.) IPMI 2011. LNCS, vol. 6801, pp. 13–24. Springer, Heidelberg (2011)

    Chapter  Google Scholar 

  7. Landman, B.A., Wan, H., Bogovic, J.A., Bazin, P.-L., Prince, J.L.: Resolution of crossing fibers with constrained compressed sensing using traditional diffusion tensor MRI. NeuroImage 59, 2175–2186 (2012)

    Article  Google Scholar 

  8. Metzler-Baddeley, C., O’Sullivan, M.J., Bells, S., Pasternak, O., Jones, D.K.: How and how not to correct for CSF-contamination in diffusion MRI. NeuroImage 59(2), 1394–1403 (2012)

    Article  Google Scholar 

  9. Oouchi, H., Yamada, K., Sakai, K., Kizu, O., Kubota, T., Ito, H., Nishimura, T.: Diffusion anisotropy measurement of brain white matter is affected by voxel size: underestimation occurs in areas with crossing fibers. AJNR 28(6), 1102–1106 (2007)

    Article  Google Scholar 

  10. Pasternak, O., Assaf, Y., Intrator, N., Sochen, N.: Variational multiple-tensor fitting of fiber-ambiguous diffusion-weighted magnetic resonance imaging voxels. Magnetic Resonance Imaging 26(8), 1133–1144 (2008)

    Article  Google Scholar 

  11. Rohde, G., Barnett, A., Basser, P., Marenco, S., Pierpaoli, C.: Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. MRM 51, 103–114 (2004)

    Article  Google Scholar 

  12. Tuch, D.S., Reese, T.G., Wiegell, M.R., Makris, N., Belliveau, J.W., Wedeen, V.J.: High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity. MRM 48(4), 577–582 (2002)

    Article  Google Scholar 

  13. Vos, S.B., Jones, D.K., Viergever, M.A., Leemans, A.: Partial volume effect as a hidden covariate in DTI analyses. NeuroImage 55(4), 1566–1576 (2011)

    Article  Google Scholar 

  14. Wang, Z., Vemuri, B.C., Chen, Y., Mareci, T.H.: A constrained variational principle for direct estimation and smoothing of the diffusion tensor field from complex dwi. IEEE Transactions on Medical Imaging 23(8), 930–939 (2004)

    Article  Google Scholar 

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Hao, X., Fletcher, P.T. (2013). Joint Fractional Segmentation and Multi-tensor Estimation in Diffusion MRI. In: Gee, J.C., Joshi, S., Pohl, K.M., Wells, W.M., Zöllei, L. (eds) Information Processing in Medical Imaging. IPMI 2013. Lecture Notes in Computer Science, vol 7917. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-38868-2_29

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  • DOI: https://doi.org/10.1007/978-3-642-38868-2_29

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-38867-5

  • Online ISBN: 978-3-642-38868-2

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