Abstract
In this paper we present two applications of a recently developed method for obtaining analytical potential energy surfaces describing the intermolecular interaction of pairs of molecules made up of three or more atoms. The method is based on an empirical formulation of the intermolecular terms of the potential based on the idea that pairwise interaction terms, usually appearing in the many-body expansion of the potential energy, must be referred to pairs of interacting centers (group of atoms and/or bonds) of the molecular monomers, rather than, as traditionally done, to atomic centers. Such representation is incorporated in a grid empowered molecular simulator and coupled with dynamical calculations to evaluate observable properties of a simple CO2 dimer and a more complex chemical system (the N-methylacetamide dimer).
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Preview
Unable to display preview. Download preview PDF.
References
Hirschfelder, J.O.: Intermolecular Forces. Adv. Chem. Phys. 12 (1967)
Maitland, G.C., Rigby, M., Smith, E.B., Wakeham, W.A.: Intermolecular Forces. Clarendon Press, Oxford (1987)
Laganà, A., Costantini, A., Gervasi, O., Faginas-Lago, N., Manuali, C., Rampino, S.: J. Grid Computing 8, 571 (2010)
EGI (European Grid Infrastructure), http://www.egi.edu ; IGI (Italian Grid Infrastructure), http://www.italiangrid.it (last visited on January 19, 2012)
Laganà, A., Riganelli, A., Gervasi, O.: LNCS, vol. 3980, p. 665 (2006), http://www3.compchem.unipg.it/compchem/ (last visited on January 20, 2012)
Buck, M., Karplus, M.: J. Phys. Chem. B 105, 11000 (2001)
Vargas, R., Garza, J., Friesner, R.A., Stern, H., Hay, B.P., Dixon, D.A.: J. Phys. Chem. A 105, 4963 (2001)
Whitfield, T.W., Crain, J., Martyna, G.J.: J. Chem. Phys. 124, 094503 (2006)
Oakeyl, M.T., Wheatley, R.J.: J. Chem. Phys. 130, 034110 (2009)
Katz, J.L., Pst, B.: Acata Crystallogr. 13, 624 (1960)
Itoh, K., Shimanouchi, T.: Biopolymers 5, 921 (1967)
Fillaux, F., De Loze, C.: Chem. Phys. Lett. 39, 547 (1976)
Fillaux, F., Baron, M.H.: Chem. Phys. 62, 275 (1981)
Zanni, M.T., Asplund, M.C., Hochstrasses, R.M.: J. Chem. Phys. 114, 4579 (2001)
Woutersen, S., Mu, Y., Stock, G., Hamm, P.: Chem. Phys. 266, 137 (2001)
Schmidt, J.R., Corcelli, S.A., Skinner, J.L.: J. Chem. Phys. 121, 8887 (2004)
Capitelli, M., Ferreira, C.M., Gordiets, B.F., Osipov, R.: Plasma kinetics in atmospheric gases. Springer (2000)
Vargas, R., Garza, J., Dixon, D.A., Hay, B.P.: J. Am. Chem. Soc. 122, 4750 (2000)
Dixon, D.A., Dobbs, K.D., Valentini, J.J.: J. Phys. Chem. 51, 13435 (1994)
Nandini, G., Sathyanarayana, D.N.: J. Mol. Struct.: THEOCHEM 579 (2002)
Kang, Y.K.: J. Mol. Struct.: THEOCHEM 546, 183 (2001)
Eckert, J., Barthes, M., Klooster, W., Albinati, A., Aznar, R., Koetzle, T.: J. Phys. Chem. 105, 19 (2001)
Akiyama, M., Torii, H.: Spectrochim. Acta, Part A 56, 137 (1999)
Pirani, F., Cappelletti, D., Liuti, G.: Chem. Phys. Lett. 350, 286 (2001)
Pirani, F., Albertí, M., Castro, A., Moix Teixidor, M., Cappelletti, D.: Chem. Phys. Lett. 37, 394 (2004)
Pirani, F., Brizi, S., Roncaratti, L., Casavecchia, P., Cappelletti, D., Vecchiocattivi, F.: Phys. Chem. Chem. Phys. 10, 5489 (2008)
Lombardi, A., Palazzetti, F.: J. Mol. Structure (THEOCHEM) 852, 22 (2008)
Cappelletti, D., Pirani, F., Bussery-Honvault, B., Gomez, L., Bartolomei, M.: Phys. Chem. Chem. Phys. 10, 4281 (2008)
Faginas Lago, N., Huarte-Larrañaga, F., Albertí, M.: Eur. Phys. J. D 55, 75 (2009)
Albertí, M., Aguilar, A., Lucas, J.M., Pirani, F., Coletti, C., Re, N.: J. Phys. Chem. A 113, 14606 (2009)
Bartolomei, M., Pirani, F., Laganà, A., Lombardi, A.: A full dimensional Grid empowered simulation of the CO2+CO2 processes. J. Comp. Chem. (submitted)
Cornell, W.D., Cieplak, P., Bayly, C.I., Gould, I.R., Merz Jr., K.M., Ferguson, D.M., Spellmeyer, D.C., Fox, T., Caldwell, J.W., Killman, P.A.: J. Am. Chem. Soc. 117, 5179 (1995)
Albertí, M., Faginas Lago, N., Laganà, A., Pirani, F.: Phys. Chem. Chem. Phys. 13, 8422 (2011)
Capitelli, M., Cappelletti, D., Colonna, G., Gorse, C., Laricchiuta, A., Liuti, G., Longo, S., Pirani, F.: Chem. Phys. 338, 62 (2007)
Hase, W.L., Duchovic, R.J., Hu, X., Komornicki, A., Lim, K.F., Lu, D.-H., Peslherbe, G.H., Swamy, K.N., Vande Linde, S.R., Zhu, L., Varandas, A., Wang, H., Wolf, R.J.: J. Quantum Chemistry Program Exchange Bulletin, 16, 671 (1996)
Laganà, A., Crocchianti, S., Piermarini, V.: LNCS, vol. 422, p. 3044 (2008); García, E., Sánchez, C., Saracibar, A., Laganà, A., Skouteris, D.: Phys. Chem. Chem. Phys. 11, 11456 (2009); Rampino, S., Skouteris, D., Laganà, A.: Int. J. Quantum Chem. 358, 110 (2010)
http://www.stfc.ac.uk/CSE/randd/ccg/software/DL_POLY/25526.aspx (last visited Jannuary 12, 2012)
Köddermann, T., Ludwig, R.: Phys. Chem. Chem. Phys. 6, 1867 (2004)
Trabelsi, S., Bahri, M., Nasr, S.: J. Chem. Phys. 122, 024502 (2005)
Jorgensen, W.L., Duffy, E.M., Essex, J.W., Severance, D.L., Blake, J.F., McDonald, N.A., Tirado-Rives, J.: Computational Studies of Molecular Recognition from alkane dimers to protein-ligand complexes. In: Seddon, K.R., Zaworotko, M. (eds.) Crystal Engineering: The Design and Application of Functional Solids. Nato Series. Series C: Mathematical and Physical Sciences, vol. 539, p. 113 (1996)
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2012 Springer-Verlag Berlin Heidelberg
About this paper
Cite this paper
Lombardi, A., Lago, N.F., Laganà, A., Pirani, F., Falcinelli, S. (2012). A Bond-Bond Portable Approach to Intermolecular Interactions: Simulations for N-methylacetamide and Carbon Dioxide Dimers. In: Murgante, B., et al. Computational Science and Its Applications – ICCSA 2012. ICCSA 2012. Lecture Notes in Computer Science, vol 7333. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-31125-3_30
Download citation
DOI: https://doi.org/10.1007/978-3-642-31125-3_30
Publisher Name: Springer, Berlin, Heidelberg
Print ISBN: 978-3-642-31124-6
Online ISBN: 978-3-642-31125-3
eBook Packages: Computer ScienceComputer Science (R0)