Skip to main content

Fault Tolerant External Memory Algorithms

  • Conference paper
Algorithms and Data Structures (WADS 2009)

Part of the book series: Lecture Notes in Computer Science ((LNTCS,volume 5664))

Included in the following conference series:

Abstract

Algorithms dealing with massive data sets are usually designed for I/O-efficiency, often captured by the I/O model by Aggarwal and Vitter. Another aspect of dealing with massive data is how to deal with memory faults, e.g. captured by the adversary based faulty memory RAM by Finocchi and Italiano. However, current fault tolerant algorithms do not scale beyond the internal memory. In this paper we investigate for the first time the connection between I/O-efficiency in the I/O model and fault tolerance in the faulty memory RAM, and we assume that both memory and disk are unreliable. We show a lower bound on the number of I/Os required for any deterministic dictionary that is resilient to memory faults. We design a static and a dynamic deterministic dictionary with optimal query performance as well as an optimal sorting algorithm and an optimal priority queue. Finally, we consider scenarios where only cells in memory or only cells on disk are corruptible and separate randomized and deterministic dictionaries in the latter.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Tezzaron Semiconductor: Soft errors in electronic memory - a white paper (2004), http://www.tezzaron.com/about/papers/papers.html

  2. van de Goor, A.J.: Testing Semiconductor Memories: Theory and Practice. ComTex Publishing, Gouda, The Netherlands (1998) ISBN 90-804276-1-6

    Google Scholar 

  3. Huang, K.H., Abraham, J.A.: Algorithm-based fault tolerance for matrix operations. IEEE Transactions on Computers 33, 518–528 (1984)

    Article  MATH  Google Scholar 

  4. Rela, M.Z., Madeira, H., Silva, J.G.: Experimental evaluation of the fail-silent behaviour in programs with consistency checks. In: Proc. 26th Annual International Symposium on Fault-Tolerant Computing, pp. 394–403 (1996)

    Google Scholar 

  5. Yau, S.S., Chen, F.C.: An approach to concurrent control flow checking. IEEE Transactions on Software Engineering SE-6(2), 126–137 (1980)

    Article  MathSciNet  MATH  Google Scholar 

  6. Pradhan, D.K.: Fault-tolerant computer system design. Prentice-Hall, Inc., Englewood Cliffs (1996)

    Google Scholar 

  7. Finocchi, I., Italiano, G.F.: Sorting and searching in the presence of memory faults (without redundancy). In: Proc. 36th Annual ACM Symposium on Theory of Computing, pp. 101–110. ACM Press, New York (2004)

    Google Scholar 

  8. Aggarwal, A., Vitter, J.S.: The input/output complexity of sorting and related problems. Commun. ACM 31, 1116–1127 (1988)

    Article  MathSciNet  Google Scholar 

  9. Finocchi, I., Grandoni, F., Italiano, G.F.: Designing reliable algorithms in unreliable memories. Computer Science Review 1(2), 77–87 (2007)

    Article  MATH  Google Scholar 

  10. Finocchi, I., Grandoni, F., Italiano, G.F.: Optimal resilient sorting and searching in the presence of memory faults. In: Bugliesi, M., Preneel, B., Sassone, V., Wegener, I. (eds.) ICALP 2006. LNCS, vol. 4051, pp. 286–298. Springer, Heidelberg (2006)

    Chapter  Google Scholar 

  11. Brodal, G.S., Fagerberg, R., Finocchi, I., Grandoni, F., Italiano, G., Jørgensen, A.G., Moruz, G., Mølhave, T.: Optimal resilient dynamic dictionaries. In: Azar, Y., Erlebach, T. (eds.) ESA 2006. LNCS, vol. 4168, pp. 347–358. Springer, Heidelberg (2006)

    Google Scholar 

  12. Petrillo, U.F., Finocchi, I., Italiano, G.F.: The price of resiliency: a case study on sorting with memory faults. In: Proc. 14th Annual European Symposium on Algorithms, pp. 768–779 (2006)

    Google Scholar 

  13. Finocchi, I., Grandoni, F., Italiano, G.F.: Resilient search trees. In: Proc. 18th ACM-SIAM Symposium on Discrete Algorithms, pp. 547–554 (2007)

    Google Scholar 

  14. Jørgensen, A.G., Moruz, G., Mølhave, T.: Priority queues resilient to memory faults. In: Proc. 10th International Workshop on Algorithms and Data Structures, pp. 127–138 (2007)

    Google Scholar 

  15. Arge, L.: External memory data structures. In: Abello, J., Pardalos, P.M., Resende, M.G.C. (eds.) Handbook of Massive Data Sets, pp. 313–358. Kluwer Academic Publishers, Dordrecht (2002)

    Chapter  Google Scholar 

  16. Vitter, J.S.: Algorithms and data structures for external memory. Foundations and Trends in Theoretical Computer Science 2(4), 305–474 (2008)

    Article  MathSciNet  MATH  Google Scholar 

  17. Bayer, R., McCreight, E.: Organization and maintenance of large ordered indexes. Acta Informatica 1, 173–189 (1972)

    Article  MATH  Google Scholar 

  18. Boyer, R.S., Moore, J.S.: MJRTY: A fast majority vote algorithm. In: Automated Reasoning: Essays in Honor of Woody Bledsoe, pp. 105–118 (1991)

    Google Scholar 

  19. Brodal, G.S., Fagerberg, R., Jacob, R.: Cache-oblivious search trees via binary trees of small height. In: Proc. 13th Annual ACM-SIAM Symposium on Discrete Algorithms, pp. 39–48 (2002)

    Google Scholar 

  20. Brodal, G.S., Katajainen, J.: Worst-case efficient external-memory priority queues. In: Arnborg, S. (ed.) SWAT 1998. LNCS, vol. 1432, pp. 107–118. Springer, Heidelberg (1998)

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2009 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Brodal, G.S., Jørgensen, A.G., Mølhave, T. (2009). Fault Tolerant External Memory Algorithms. In: Dehne, F., Gavrilova, M., Sack, JR., Tóth , C.D. (eds) Algorithms and Data Structures. WADS 2009. Lecture Notes in Computer Science, vol 5664. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-03367-4_36

Download citation

  • DOI: https://doi.org/10.1007/978-3-642-03367-4_36

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-642-03366-7

  • Online ISBN: 978-3-642-03367-4

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics