Abstract
In this paper we elaborate on the challenges of learning manifolds that have many relevant clusters, and where the clusters can have widely varying statistics. We call such data manifolds highly structured. We describe approaches to structure identification through self-organized learning, in the context of such data. We present some of our recently developed methods to show that self-organizing neural maps contain a great deal of information that can be unleashed and put to use to achieve detailed and accurate learning of highly structured manifolds, and we also offer some comparisons with existing clustering methods on real data.
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References
Lee, J., Verleysen, M.: Nonlinear Dimensionality Reduction. Information Science and Statistics. Springer, New York (2007)
Gorban, A., Kégl, B., Wunsch, D., Zinovyev, A. (eds.): Principal Manifolds for data Visualization and Dimension Reduction. Lecture Notes in Computational Science and Engineering. Springer, New York (2008)
Cox, T.F., Cox, M.: Multidimensional Scaling. Chapman and Hall/CRC, Boca Raton (2001)
Tenenbaum, J.B., de Silva, V., Langford, J.: A global geometric framework for nonlinear dimensionality reduction. Science 290(5500), 2319–2323 (2000)
Roweis, S., Soul, L.: Nonlinear dimensionality reduction by locally linear embedding. Science 290(5500), 2323–2326 (2000)
Donoho, D.L., Grimes, C.: Hessian eigenmaps: new locally linear embedding techniques for high-dimensional data. Proc. National Academy of Sciences. 100, 5591–5596 (2003)
Pless, R.: Using Isomap to explore video sequences. In: Proc. International Conference on Computer Vision, pp. 1433–1440 (2003)
Yang, M.: Face Recognition Using Extended Isomap. In: Proc. International Conference on Image Processing ICIP 2002, vol. 2, pp. 117–120 (2002)
Polito, M., Perona, P.: Grouping and dimensionality reduction by locally linear embedding. In: Proc. Neural Information Processing Systems, NIPS (2001)
Vlachos, M., Domeniconi, C., Gunopulos, D., Kollios, G., Koudas, N.: Non-linear dimensionality reduction techniques for classification and visualization. In: Proceedings of 8th SIGKDD, pp. 645–651 (2002)
Zhang, J., Li, S.Z., Wang, J.: Manifold learning and applications in recognition. In: Tan, Y.P., Kim Hui Yap, L.W. (eds.) Intelligent Multimedia Processing with Soft Computing. Springer, Heidelberg (2004)
Kohonen, T.: Self-Organizing Maps, 2nd edn. Springer, Heidelberg (1997)
Martinetz, T., Berkovich, S., Schulten, K.: Neural Gas network for vector quantization and its application to time-series prediction. IEEE Trans. on Neural Networks 4(4), 558–569 (1993)
Cottrell, M., Hammer, B., Hasenfuss, A., Villmann, T.: Batch and median neural gas. Neural Networks 19, 762–771 (2006)
Bishop, C.M., Svensen, M., Williams, C.K.I.: GTM: The Generative Topographic Mapping. Neural Computation 10(1), 215–234 (1998)
Aupetit, M.: Learning topology with the Generative Gaussian Graph and the EM Algorithm. In: Weiss, Y., Schölkopf, B., Platt, J. (eds.) Advances in Neural Information Processing Systems 18, pp. 83–90. MIT Press, Cambridge (2006)
Bauer, H.U., Der, R., Herrmann, M.: Controlling the magnification factor of self–organizing feature maps. Neural Computation 8(4), 757–771 (1996)
Merényi, E., Jain, A., Villmann, T.: Explicit magnification control of self-organizing maps for “forbidden” data. IEEE Trans. on Neural Networks 18(3), 786–797 (2007)
Villmann, T., Claussen, J.: Magnification control in self-organizing maps and neural gas. Neural Computation 18, 446–469 (2006)
Hammer, B., Hasenfuss, A., Villmann, T.: Magnification control for batch neural gas. Neurocomputing 70, 1125–1234 (2007)
DeSieno, D.: Adding a conscience to competitive learning. In: Proc. IEEE Int’l Conference on Neural Networks (ICNN), New York, July 1988, vol. I, pp. I–117–124 (1988)
Cottrell, M., Fort, J., Pages, G.: Theoretical aspects of the SOM algorithm. Neurocomputing 21, 119–138 (1998)
Ritter, H., Schulten, K.: On the stationary state of Kohonen’s self-organizing sensory mapping. Biol. Cyb. 54, 99–106 (1986)
Erwin, E., Obermayer, K., Schulten, K.: Self-organizing maps: ordering, convergence properties and energy functions. Biol. Cyb. 67, 47–55 (1992)
Hammer, B., Villmann, T.: Mathematical aspects of neural networks. In: Proc. Of European Symposium on Artificial Neural Networks (ESANN 2003), Brussels, Belgium. D facto publications (2003)
Martinetz, T., Schulten, K.: Topology representing networks. Neural Networks 7(3), 507–522 (1994)
Villmann, T., Der, R., Herrmann, M., Martinetz, T.: Topology Preservation in Self–Organizing Feature Maps: Exact Definition and Measurement. IEEE Transactions on Neural Networks 8(2), 256–266 (1997)
Bauer, H.U., Pawelzik, K.: Quantifying the neighborhood preservation of Self-Organizing Feature Maps. IEEE Trans. on Neural Networks 3, 570–579 (1992)
Kiviluoto, K.: Topology preservation in self-organizing maps. In: Proceedings IEEE International Conference on Neural Networks, Bruges, June 3–6, 1996, pp. 294–299 (1996)
Zhang, L., Merényi, E.: Weighted Differential Topographic Function: A Refinement of the Topographic Function. In: Proc. 14th European Symposium on Artificial Neural Networks (ESANN 2006), Brussels, Belgium, pp. 13–18. D facto publications (2006)
Csathó, B., Krabill, W., Lucas, J., Schenk, T.: A multisensor data set of an urban and coastal scene. In: Int’l Archives of Photogrammetry and Remote Sensing, vol. 32, pp. 26–31 (1998)
Bodt, E., Verleysen, M.C.: Statistical tools to assess the reliability of self-organizing maps. Neural Networks 15, 967–978 (2002)
Merényi, E., Tasdemir, K., Farrand, W.: Intelligent information extraction to aid science decision making in autonomous space exploration. In: Fink, W. (ed.) Proceedings of DSS 2008 SPIE Defense and Security Symposium, Space Exploration Technologies, Orlando, FL, Mach 17–18, 2008, vol. 6960, pp. 17–18. SPIE (2008) 69600M Invited
Tasdemir, K., Merényi, E.: Exploiting data topology in visualization and clustering of Self-Organizing Maps. IEEE Trans. on Neural Networks (2008) (in press)
Ultsch, A.: Self-organizing neural networks for visualization and classification. In: Opitz, O., Lausen, B. (eds.) Information and Classification — Concepts, Methods and Applications, pp. 307–313. Springer, Berlin (1993)
Kraaijveld, M., Mao, J., Jain, A.: A nonlinear projection method based on Kohonen’s topology preserving maps. IEEE Trans. on Neural Networks 6(3), 548–559 (1995)
Merkl, D., Rauber, A.: Alternative ways for cluster visualization in Self-Organizing Maps. In: Proc. 1st Workshop on Self-Organizing Maps (WSOM 1997), Espoo, Finland, June 4-6, 1997, pp. 106–111 (1997)
Ultsch, A.: Maps for the visualization of high-dimensional data spaces. In: Proc. 4th Workshop on Self-Organizing Maps (WSOM 2003), Paris, France, vol. 3, pp. 225–230 (2003)
Cottrell, M., de Bodt, E.: A Kohonen map representation to avoid misleading interpretations. In: Proc. 4th European Symposium on Artificial Neural Networks (ESANN 1996), pp. 103–110. D-Facto, Bruges (1996)
Himberg, J.: A SOM based cluster visualization and its application for false colouring. In: Proc. IEEE-INNS-ENNS International Joint Conf. on Neural Networks, Como, Italy, vol. 3, pp. 587–592 (2000)
Kaski, S., Venna, J., Kohonen, T.: Coloring that reveals cluster structures in multivariate data. Australian Journal of Intelligent Information Processing Systems 6, 82–88 (2000)
Villmann, T., Merényi, E.: Extensions and modifications of the Kohonen-SOM and applications in remote sensing image analysis. In: Seiffert, U., Jain, L.C. (eds.) Self-Organizing Maps: Recent Advances and Applications, pp. 121–145. Springer, Heidelberg (2001)
Vesanto, J.: SOM-Based Data Visualization Methods. Intelligent Data Analysis 3(2), 111–126 (1999)
Kaski, S., Kohonen, T., Venna, J.: Tips for SOM Processing and Colourcoding of Maps. In: Deboeck, G., Kohonen, T. (eds.) Visual Explorations in Finance Using Self-Organizing Maps, London (1998)
Pölzlbauer, G., Rauber, A., Dittenbach, M.: Advanced visualization techniques for self-organizing maps with graph-based methods. In: Jun, W., Xiaofeng, L., Zhang, Y. (eds.) Proc. Second Intl. Symp. on Neural Networks (ISSN 2005), Chongqing, China, pp. 75–80. Springer, Heidelberg (2005)
Aupetit, M., Catz, T.: High-dimensional labeled data analysis with topology representing graphs. Neurocomputing 63, 139–169 (2005)
Aupetit, M.: Visualizing the trustworthiness of a projection. In: Proc. 14th European Symposium on Artificial Neural Networks, ESANN 2006, Bruges, Belgium, April 26-28, 2006, pp. 271–276 (2006)
Howell, E.S., Merényi, E., Lebofsky, L.A.: Classification of asteroid spectra using a neural network. Jour. Geophys. Res. 99(E5), 10, 847–10, 865 (1994)
Merényi, E., Howell, E.S., et al.: Prediction of water in asteroids from spectral data shortward of 3 microns. ICARUS 129, 421–439 (1997)
Tasdemir, K., Merényi, E.: Considering topology in the clustering of self-organizing maps. In: Proc. 5th Workshop On Self-Organizing Maps (WSOM 2005), Paris, France, September 5–8, 2005, pp. 439–446 (2005)
Tasdemir, K., Merényi, E.: Data topology visualization for the Self-Organizing Map. In: Proc. 14th European Symposium on Artificial Neural Networks (ESANN 2006), Brussels, Belgium, April 26–28, 2006, pp. 125–130. D facto publications (2006)
Vesanto, J., Alhoniemi, E.: Clustering of the self-organizing map. IEEE Transactions on Neural Networks 11(3), 586–600 (2000)
Merényi, E., Csató, B., Taşdemir, K.: Knowledge discovery in urban environments from fused multi-dimensional imagery. In: Gamba, P., Crawford, M. (eds.) Proc. IEEE GRSS/ISPRS Joint Workshop on Remote Sensing and Data Fusion over Urban Areas (URBAN 2007), Paris, France, IEEE Catalog number 07EX1577, April 11-13, 2007, pp. 1–13 (2007)
Csathó, B., Schenk, T., Lee, D.C., Filin, S.: Inclusion of multispectral data into object recognition. Int’l Archives of Photogrammetry and Remote Sensing 32, 53–61 (1999)
Schott, J., Brown, S., Raqueño, R., Gross, H., Robinson, G.: An advanced synthetic image generation model and its application to multi/hyperspectral algorithm development. Canadian Journal of Remote Sensing 25(2) (June 1999)
Ientilucci, E., Brown, S.: Advances in wide-area hyperspectral image simulation. In: Proceedings of SPIE, May 5–8, 2003, vol. 5075, pp. 110–121 (2003)
Green, R.O.: Summaries of the 6th Annual JPL Airborne Geoscience Workshop, 1. In: AVIRIS Workshop, Pasadena, CA, March 4–6 (1996)
Green, R.O., Boardman, J.: Exploration of the relationship between information content and signal-to-noise ratio and spatial resolution. In: Proc. 9th AVIRIS Earth Science and Applications Workshop, Pasadena, CA, February 23–25 (2000)
Tou, J., Gonzalez, R.C.: Pattern Recognition Principles. Addison-Wesley Publishing Company, Reading (1974)
Tasdemir, K., Merényi, E.: A new cluster validity index for prototype based clustering algorithms based on inter- and intra-cluster density. In: Proc. Int’l Joint Conf. on Neural Networks (IJCNN 2007), Orlando, FL, August 12–17, 2007, pp. 2205–2211 (2007)
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Merényi, E., Tasdemir, K., Zhang, L. (2009). Learning Highly Structured Manifolds: Harnessing the Power of SOMs. In: Biehl, M., Hammer, B., Verleysen, M., Villmann, T. (eds) Similarity-Based Clustering. Lecture Notes in Computer Science(), vol 5400. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-01805-3_8
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DOI: https://doi.org/10.1007/978-3-642-01805-3_8
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