Skip to main content

Fuzzy Classifier Based Feature Reduction for Better Gene Selection

  • Conference paper
Data Warehousing and Knowledge Discovery (DaWaK 2007)

Part of the book series: Lecture Notes in Computer Science ((LNISA,volume 4654))

Included in the following conference series:

Abstract

This paper presents a novel approach for identifying relevant genes by employing a fuzzy classifier. First a fuzzy classifier rule set is derived such that each rule involves a compact set of genes. Then, a correlation matrix is produced by considering the correlations between the genes in each rule. Apriori is applied on the correlation matrix to find the maximal sets of correlated genes after tuning the minimum support value. Experiments conducted on the Leukemia dataset demonstrate the effectiveness of the proposed approach in producing relevant genes.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 39.99
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

References

  1. Zeng, F., Yap, C.H.R., Wong, L.: Using Feature Generation and Feature Selection for Accurate Prediction of Translation Initiation Sites. Genome Informatics 13, 192–200 (2002)

    Google Scholar 

  2. Kianmehr, K., Zhang, H., Nikolov, K., Özyer, T., Alhajj, R.: Combining Neural Network and Support Vector Machine into Integrated Approach for Biodata Mining. In: Proc. of ICEIS, pp. 182–187 (2005)

    Google Scholar 

  3. Dash, M., Choi, K., Scheuermann, P., Liu, H.: Feature Selection for Clustering-a Filter Solution. In: Proc. of IEEE ICDM, pp. 115–122 (2002)

    Google Scholar 

  4. Hall, M.A.: Correlation-Based Feature Selection for Discrete and Numeric Class Machine Learning. In: Proc. of ICML, pp. 359–366 (2000)

    Google Scholar 

  5. Caruana, R., Freitag, D.: Greedy Attribute Selection. In: Proc. of ICML, pp. 28–36 (1994)

    Google Scholar 

  6. Dy, J.G., Brodley, C.E.: Feature Subset Selection and Order Identification for Unsupervised Learning. In: Proc. of ICML, pp. 247–254 (2000)

    Google Scholar 

  7. Das, S.: Filters, Wrappers and a Boosting-Based Hybrid for Feature Selection. In: Proc. of ICML, pp. 74–81 (2001)

    Google Scholar 

  8. Ng, A.Y.: On Feature Selection: Learning with Exponentially Many Irrelevant Features as Training Examples. In: Proc. of ICML, pp. 404–412 (1998)

    Google Scholar 

  9. Guyon, I., Weston, J., Barnhill, S., Vapnik, V.: Gene selection for cancer classification using support vector machines. Machine Learning 46(1-3), 389–422 (2002)

    Article  MATH  Google Scholar 

  10. Fu, L.M., Youn, E.S.: Improving reliability of gene selection from microarray Functional Genomics data. IEEE Transactions on Information Technology in Biomedicine 7(3) (2003)

    Google Scholar 

  11. Fu, L.M.: Cancer Subtype Classification Based on Gene Expression Signatures (last accessed on 17/4/2007), URL: http://www.cise.ufl.edu/~fu/NSF/cancer_classify_GES.html

  12. Ishibuchi, H., Nakashima, T., Muratam, T.: Performance Evaluation of Fuzzy Classifier Systems for Multi-dimensional Pattern Classification Problems. IEEE Trans. on Systems, Man, and Cybernetics (October 1999)

    Google Scholar 

  13. Abe, S., Lan, M.-s.: A Method for Fuzzy Rules Extraction Directly from Numerical Data and Its Application to Pattern Classification. IEEE Trans. on Fuzzy Systems 3(1), 18–28 (1995)

    Article  MathSciNet  Google Scholar 

  14. (Last Accessed on 17/4/2007) URL: http://sdmc.lit.org.sg/GEDatasets/Datasets.html

Download references

Author information

Authors and Affiliations

Authors

Editor information

Il Yeal Song Johann Eder Tho Manh Nguyen

Rights and permissions

Reprints and permissions

Copyright information

© 2007 Springer-Verlag Berlin Heidelberg

About this paper

Cite this paper

Khabbaz, M., Kianmher, K., Alshalalfa, M., Alhajj, R. (2007). Fuzzy Classifier Based Feature Reduction for Better Gene Selection. In: Song, I.Y., Eder, J., Nguyen, T.M. (eds) Data Warehousing and Knowledge Discovery. DaWaK 2007. Lecture Notes in Computer Science, vol 4654. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-74553-2_31

Download citation

  • DOI: https://doi.org/10.1007/978-3-540-74553-2_31

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-74552-5

  • Online ISBN: 978-3-540-74553-2

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics