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Genomic Data Resources and Data Mining

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Plant Bioinformatics

Abstract

Genome is considered as the carrier of hereditary information and the operative system of an organism. The genomic data are in the form of sequentially arranged nucleotide base pairs. The data mining of genome resources is chiefly based on computational tools acknowledged as computational genome annotation. The computational genome annotation may be either structural or functional. The structural annotation refers to the identification of hypothetical genes in a DNA sequence using computational algorithms, while the functional annotation is assigned as the functions to the predicted genes using sequence similarity searches against other genes of known function. The aim of this chapter is to focus on the genomic resources and mining of genomic databases using the computational tools.

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Acknowledgments

The authors (Mohd. Sayeed Akhtar and Ibrahim A. Alaraidh) are highly grateful to the Department of Botany, Gandhi Faiz-e-Aam College, Shahajahanpur, U.P., India, and the Botany and Microbiology Department, Science College, King Saud University, Riyadh, Kingdom of Saudi Arabia.

Author information

Authors and Affiliations

  1. Department of Botany, Gandhi Faiz-e-Aam College, Shahjahanpur, 242001, Uttar Pradesh, India

    Mohd Sayeed Akhtar

  2. Department of Crop Science, Faculty of Agriculture, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia

    Mallappa Kumara Swamy

  3. Department of Biotechnology, Padmashree Institute of Management and Sciences, Kommagatta, Kengeri, Bangalore, 560060, Karnataka, India

    Mallappa Kumara Swamy

  4. Botany and Microbiology Department, King Saud University, Science College, P.O. Box 2455, Riyadh, 11451, Saudi Arabia

    Ibrahim A. Alaraidh

  5. Department of Biological Sciences, Birla Institute of Technology and Science, Pilani, 333031, Rajasthan, India

    Jitendra Panwar

Authors
  1. Mohd Sayeed Akhtar
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  2. Mallappa Kumara Swamy
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  3. Ibrahim A. Alaraidh
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  4. Jitendra Panwar
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Corresponding author

Correspondence to Mohd Sayeed Akhtar .

Editor information

Editors and Affiliations

  1. Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia

    Khalid Rehman Hakeem

  2. Department of Microbiology and Molecular Biology, Chungnam National University, Daejeon, Korea (Republic of)

    Adeel Malik

  3. Department of Bioengineering, Faculty of Engineering, Ege University, Bornova, Ä°zmir, Turkey

    Fazilet Vardar-Sukan

  4. Centre for Environmental Studies & Botany Department, Ege University, Bornova, Ä°zmir, Turkey

    Munir Ozturk

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Akhtar, M.S., Swamy, M.K., Alaraidh, I.A., Panwar, J. (2017). Genomic Data Resources and Data Mining. In: Hakeem, K., Malik, A., Vardar-Sukan, F., Ozturk, M. (eds) Plant Bioinformatics. Springer, Cham. https://doi.org/10.1007/978-3-319-67156-7_10

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